Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Forward (+)

10842863 .. 10845833

Gene Structure 2971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGACTCTGAAAGCGTCGTAGCTGCTGACGGTGCGGATTGTGCTATTGCAAATGGTGAAGTGACAATGGAAGGAGACAGTAGTAATGGAAATGGTGGTACTTCAGAGAATTTGGAATGTTGTTCTACTCAGCATCCTATGGAGGCATCTGAGGGCACACAGAATGAACAAGTGGATGATTCAAAACAGATGAGAGGACAAAAGGTGCAAGGAAGGGTCAAGCATGAGAAGACCTCTGGAGGCAAGAATATTCCATCAGTCTTGGTGAAGAAGAAAAAAGATGGGAAAGTGGTGGCATCAAATGGTTCTGTTGCTCCAAACGTAAAGCCTGTAAAGTCTCCTAAGAGCAAATCGCTCAATGGTAGAGAGGCTCATGTCACGAAGCATGGGAACCATGACTCTCTACCAGCTGAAGGGACCAGGGACAAGCCAAAACTGAGGGAAACAAGGAAACAAGTCAATGATACATCTGAAGATGATACACAGTATCCAAAAGAAGATGATGGCAAACCTCGTCGAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACCAACGAGCTGAAAAAAGAAGAGAGTTCTATTCAAAGCTTGAGGAAAAGATCCATGCGAAAGAAGAAGAAAAGAATACCGTACAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGCTTAAGATGCTAAGGAAGAGTCTGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACCTCAGCTACCTAAAACAGAGTTAAAGAAGATAGCGATAACAAGACCAAAATCTCCAAAACTCGGGCGGAAGAAGACCAATTCTCGAGCAGATTCTGAAGAAGCCATTACTATTCAAACCCCTCGCTTTGGTAGGTTGAGCTTAGATGAGAAAACTCCTAAAGATAACCCGGTTGTTGAAGGAAGTGTACCCGGTGAGACCAAGAAGCCACCAGTGCGCAAGTCACTTCCCAGGTTGCCTTCAGAAAAGACAAATCTGTCCAACGGGAAGGTGGCTCCAGCAAAAGCTGTAACAGCCTCAACAAAGGCAAAGTCGGAAAGAAAGAAACCAGATAAAGATGTGGATGACCTAAGCCAGTCAAGTCCTGTAGACGACAATGCTGACCCAGAAGATTCACAAGAACAAGCTCCAAGAGTGAATGAAGACAGAAACGAATCTCACATGGTAGTGGAAGTGGTTGCGGTTGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

403

Amino Acids

44.34

Weight (kDa)

8.92

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	182 - 251	8.8e-26	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	994
Acc16I	TGCGCA	1 cut(s)	956
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	1107
AciI	CCGC	3 cut(s)	35, 805, 1199
AclWI	GGATC	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	5 cut(s)	87, 432, 492, 855, 963
AfaI	GTAC	3 cut(s)	100, 642, 927
AfiI	CCNNNNNNNGG	4 cut(s)	413, 539, 800, 866
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	5 cut(s)	183, 594, 706, 854, 917
AjnI	CCWGG	2 cut(s)	419, 968
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	3 cut(s)	69, 342, 929
Alw44I	GTGCAC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	604
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	2 cut(s)	800, 822
ApaLI	GTGCAC	1 cut(s)	525
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	2 cut(s)	908, 930
AsuHPI	GGTGA	3 cut(s)	68, 277, 944
AvaI	CYCGRG	2 cut(s)	800, 822
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	2 cut(s)	158, 529
BarI	GAAGNNNNNNTAC	2 cut(s)	909, 941
BbsI	GAAGAC	3 cut(s)	236, 818, 1167
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	3 cut(s)	262, 275, 497
BciT130I	CCWGG	2 cut(s)	421, 970
BciVI	GTATCC	1 cut(s)	498
BcnI	CCSGG	2 cut(s)	908, 930
BcoDI	GTCTC	3 cut(s)	69, 342, 929
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	1104
BfrI	CTTAAG	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	4 cut(s)	421, 908, 930, 970
Bme18I	GGWCC	1 cut(s)	417
BmeT110I	CYCGRG	2 cut(s)	800, 822
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	3 cut(s)	392, 418, 1014
BmrFI	CCNGG	4 cut(s)	421, 908, 930, 970
BmsI	GCATC	4 cut(s)	142, 155, 305, 672
BpiI	GAAGAC	3 cut(s)	236, 818, 1167
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	2 cut(s)	258, 999
Bpu10I	CCTNAGC	3 cut(s)	686, 741, 1088
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	2 cut(s)	620, 648
BpuMI	CCSGG	2 cut(s)	908, 930
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	3 cut(s)	420, 654, 968
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 539, 800, 866
Bse1I	ACTGG	2 cut(s)	950, 1093
BseBI	CCWGG	2 cut(s)	421, 970
BseDI	CCNNGG	3 cut(s)	420, 654, 968
BseGI	GGATG	3 cut(s)	133, 181, 1087
BseLI	CCNNNNNNNGG	4 cut(s)	413, 539, 800, 866
BseMII	CTCAG	5 cut(s)	141, 143, 428, 663, 755
BseNI	ACTGG	2 cut(s)	950, 1093
BseSI	GKGCMC	2 cut(s)	158, 529
BseXI	GCAGC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	2 cut(s)	800, 822
BsiSI	CCGG	2 cut(s)	908, 930
BslFI	GGGAC	2 cut(s)	430, 437
BslI	CCNNNNNNNGG	4 cut(s)	413, 539, 800, 866
BsmAI	GTCTC	3 cut(s)	69, 342, 929
BsmFI	GGGAC	2 cut(s)	430, 437
Bso31I	GGTCTC	1 cut(s)	929
BsoBI	CYCGRG	2 cut(s)	800, 822
Bsp1286I	GDGCHC	2 cut(s)	158, 529
Bsp143I	GATC	1 cut(s)	609
Bsp1720I	GCTNAGC	1 cut(s)	672
BspACI	CCGC	3 cut(s)	35, 805, 1199
BspCNI	CTCAG	5 cut(s)	142, 142, 429, 664, 754
BspLI	GGNNCC	3 cut(s)	392, 418, 1014
BspPI	GGATC	1 cut(s)	604
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	929
BsrI	ACTGG	2 cut(s)	950, 1093
BssECI	CCNNGG	3 cut(s)	420, 654, 968
BssMI	GATC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	654
Bst2UI	CCWGG	2 cut(s)	421, 970
Bst4CI	ACNGT	4 cut(s)	32, 80, 486, 640
Bst6I	CTCTTC	2 cut(s)	574, 686
BstAFI	CTTAAG	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	133, 181, 1087
BstHHI	GCGC	1 cut(s)	957
BstKTI	GATC	1 cut(s)	612
BstMAI	GTCTC	3 cut(s)	69, 342, 929
BstMBI	GATC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 682, 952, 1031
BstNI	CCWGG	2 cut(s)	421, 970
BstSCI	CCNGG	4 cut(s)	419, 906, 928, 968
BstSFI	CTRYAG	1 cut(s)	1104
BstSLI	GKGCMC	2 cut(s)	158, 529
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	3 cut(s)	236, 818, 1167
BstX2I	RGATCY	1 cut(s)	609
BstYI	RGATCY	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	133, 181, 1087
BtsIMutI	CAGTG	1 cut(s)	957
CaiI	CAGNNNCTG	1 cut(s)	833
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	99, 641, 926
CviAII	CATG	6 cut(s)	224, 374, 386, 395, 614, 1180
CviQI	GTAC	3 cut(s)	99, 641, 926
DpnI	GATC	1 cut(s)	611
DpnII	GATC	1 cut(s)	609
DrdI	GACNNNNNNGTC	1 cut(s)	994
DseDI	GACNNNNNNGTC	1 cut(s)	994
Eam1104I	CTCTTC	2 cut(s)	574, 686
EarI	CTCTTC	2 cut(s)	574, 686
EciI	GGCGGA	1 cut(s)	820
Eco130I	CCWWGG	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	929
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	5 cut(s)	87, 432, 492, 855, 963
Eco88I	CYCGRG	2 cut(s)	800, 822
EcoRII	CCWGG	2 cut(s)	419, 968
EcoT14I	CCWWGG	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	6 cut(s)	227, 377, 389, 398, 617, 1183
FaiI	YATR	9 cut(s)	140, 225, 375, 387, 396, 540, 615, 719, 1181
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	2 cut(s)	430, 437
FatI	CATG	6 cut(s)	223, 373, 385, 394, 613, 1179
FblI	GTMKAC	1 cut(s)	1107
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	3 cut(s)	120, 188, 1094
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	522
FspI	TGCGCA	1 cut(s)	956
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	2 cut(s)	258, 999
HapII	CCGG	2 cut(s)	908, 930
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	957
Hin1II	CATG	6 cut(s)	227, 377, 389, 398, 617, 1183
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	8 cut(s)	5, 179, 398, 543, 694, 830, 1130, 1172
HpaII	CCGG	2 cut(s)	908, 930
HphI	GGTGA	3 cut(s)	68, 277, 944
Hpy166II	GTNNAC	3 cut(s)	527, 926, 1108
Hpy188I	TCNGA	8 cut(s)	10, 106, 151, 472, 699, 835, 982, 1054
Hpy188III	TCNNGA	5 cut(s)	237, 379, 665, 734, 822
Hpy8I	GTNNAC	3 cut(s)	527, 926, 1108
Hpy99I	CGWCG	2 cut(s)	20, 519
HpyAV	CCTTC	7 cut(s)	65, 207, 407, 736, 911, 987, 1000
HpyCH4III	ACNGT	4 cut(s)	32, 80, 486, 640
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	50, 208, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 682, 952, 1031
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	6 cut(s)	227, 377, 389, 398, 617, 1183
HspAI	GCGC	1 cut(s)	955
Kzo9I	GATC	1 cut(s)	609
LmnI	GCTCC	3 cut(s)	319, 1018, 1150
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	4 cut(s)	142, 155, 305, 672
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	5 cut(s)	61, 376, 557, 960, 1027
MalI	GATC	1 cut(s)	611
MboI	GATC	1 cut(s)	609
MflI	RGATCY	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	158, 529
MluCI	AATT	3 cut(s)	109, 535, 817
MlyI	GAGTC	2 cut(s)	392, 703
MmeI	TCCRAC	2 cut(s)	1023, 1032
MseI	TTAA	3 cut(s)	678, 761, 1210
MslI	CAYNNNNRTG	2 cut(s)	716, 1184
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	908, 930
MspR9I	CCNGG	4 cut(s)	421, 908, 930, 970
MvaI	CCWGG	2 cut(s)	421, 970
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 682, 952, 1031
NciI	CCSGG	2 cut(s)	908, 930
NdeII	GATC	1 cut(s)	609
NlaIII	CATG	6 cut(s)	227, 377, 389, 398, 617, 1183
NlaIV	GGNNCC	3 cut(s)	392, 418, 1014
NmuCI	GTSAC	4 cut(s)	61, 376, 557, 960
NsbI	TGCGCA	1 cut(s)	956
PaeR7I	CTCGAG	1 cut(s)	822
PfeI	GAWTC	5 cut(s)	179, 543, 830, 1130, 1172
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	2 cut(s)	392, 702
PpsI	GAGTC	2 cut(s)	392, 702
Psp6I	CCWGG	2 cut(s)	419, 968
PspGI	CCWGG	2 cut(s)	419, 968
PspN4I	GGNNCC	3 cut(s)	392, 418, 1014
PspPI	GGNCC	1 cut(s)	417
PsrI	GAACNNNNNNTAC	2 cut(s)	729, 761
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	609
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	100, 642, 927
RsaNI	GTAC	3 cut(s)	99, 641, 926
RseI	CAYNNNNRTG	2 cut(s)	716, 1184
SaqAI	TTAA	3 cut(s)	678, 761, 1210
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	609
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	2 cut(s)	392, 703
ScrFI	CCNGG	4 cut(s)	421, 908, 930, 970
SduI	GDGCHC	2 cut(s)	158, 529
SfaNI	GCATC	4 cut(s)	142, 155, 305, 672
SfcI	CTRYAG	1 cut(s)	1104
Sfr274I	CTCGAG	1 cut(s)	822
SinI	GGWCC	1 cut(s)	417
SlaI	CTCGAG	1 cut(s)	822
SmiMI	CAYNNNNRTG	2 cut(s)	716, 1184
SmlI	CTYRAG	4 cut(s)	599, 663, 677, 822
SmoI	CTYRAG	4 cut(s)	599, 663, 677, 822
Sse9I	AATT	3 cut(s)	109, 535, 817
SsiI	CCGC	3 cut(s)	35, 805, 1199
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	4 cut(s)	419, 906, 928, 968
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	32, 80, 486, 640
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	517, 823
TasI	AATT	3 cut(s)	109, 535, 817
TfiI	GAWTC	5 cut(s)	179, 543, 830, 1130, 1172
Tru1I	TTAA	3 cut(s)	678, 761, 1210
Tru9I	TTAA	3 cut(s)	678, 761, 1210
TscAI	CASTG	1 cut(s)	957
TseFI	GTSAC	4 cut(s)	61, 376, 557, 960
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	4 cut(s)	61, 376, 557, 960
TspDTI	ATGAA	2 cut(s)	180, 1173
TspRI	CASTG	1 cut(s)	957
Van91I	CCANNNNNTGG	1 cut(s)	539
Vha464I	CTTAAG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XhoI	CTCGAG	1 cut(s)	822
XmiI	GTMKAC	1 cut(s)	1107
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.