Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Reverse (-)

7618681 .. 7621430

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11290.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAATGGGACCTTCAGCGAGAATACTATGACGGATACTGCAGCATCAAACGGGAAAATTGAAAATGTTGATAAGCAGGATGACGGTGTTAATAATAGCTCATCTATTTGGAAAGCCAAAGAGGCCAATGTCAACCCTGAAAGCAATGGTTTGACTGTTGCTTTGACTATTGCTAAGGAAGACGAAGTGAAAGGTTCTACTCACCCAAAACCCGCCAAAGTGCATAAAGGTCCAGGGAAGAGCAAGAATGAGAAGGCCCCTGGTGCCAAGAGCGTCTCCCCAATTTCGATGAAGAAAAGCAAAGATGGAAATGGCGCAGAGGCTAAGGCTTCTGTTTCGAATGGTTCAGCTGCTCCAAATTCACGCCCCAAACAGCCTAACAAGAGTGAATCATTTAATGGGCGACAGGTTCAGTCATCCAATCAGCAACCTGAAAAACCTGATGCAGAATTGTCTGAAAGCAGCGTGGAGAAGGCAAAGCTGAAGCCTTTGAAAAAGGGATCCCAGAATCAGGCTGAAGGAGAATCTCAATCCTCTTTAAGTCCTACAGAAGGAGATAAACATCCTAGGGTTGGTACACTTCCAAACTATGGTTTCAGTTTTAGGTGCGATGAACGAGCTGAGAAAAGGAGAGAGTTCTATACGAAAATGGAGGAAAAGATACATGCAAAGGAGATGGAAAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATTAGGATGCTCAGGAAGAAACTGACTTTCAAAGCAACTCCAATGCCAAGCTTCTATCAGGAGCCTCCACCTCCTAAGGTGGAGCTGAAGAAGATACCAACAACAAGAGCCAAGTCTCCCAAGCTCGGACGTAGGAAGAGCTTACCTCCTGCAGTTTCTGAAGCAAATGGTAATACAAATGATCAATCTAGCAGGCTTAGTCTGGATCAGAAAGTCCCTCAGAACACTTCTAAAGGGCCCTCTCCTGTACATCCAAAGAAGCCACAACGGAAATCTCTTCCTAGACTCCCGTCTGAGAAGACTACTTTACCTAATGCAGTGAATGAACGAAAAACGACTTTTAAGGCAGTAAACAAGGAAAAGACCAACTTAATTGCTGCAATGAATGAGAATGCCACCGTGCCCACTGCAGAAAGTGAAGCTGGATCTCACACCCAAGATCAGGAGGCAGCAGTTCCCAAAGCCAAGGTAAGCGAAGAGCAGTCCCATACAGATGACGAGACAGCCGATGAAGAGCAACATCAGCCCACCTACATGCAAGAACCTATAGCCTCGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

430

Amino Acids

46.89

Weight (kDa)

9.42

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	4 cut(s)	495, 508, 939, 1159
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	4 cut(s)	503, 537, 833, 906
AfaI	GTAC	2 cut(s)	577, 975
AfiI	CCNNNNNNNGG	6 cut(s)	511, 551, 572, 590, 851, 1168
AgsI	TTSAA	3 cut(s)	62, 493, 757
AjnI	CCWGG	2 cut(s)	232, 259
Alw26I	GTCTC	3 cut(s)	280, 846, 1220
AlwI	GGATC	4 cut(s)	495, 508, 939, 1159
AlwNI	CAGNNNCTG	1 cut(s)	884
AoxI	GGCC	3 cut(s)	123, 255, 962
ApaI	GGGCCC	1 cut(s)	966
ApeKI	GCWGC	5 cut(s)	41, 350, 462, 1103, 1175
ApoI	RAATTY	1 cut(s)	358
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AspA2I	CCTAGG	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	5 cut(s)	9, 230, 256, 962, 963
AsuHPI	GGTGA	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	9, 230
AvrII	CCTAGG	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	801
BaeGI	GKGCMC	2 cut(s)	966, 1131
BamHI	GGATCC	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	966
BbsI	GAAGAC	2 cut(s)	186, 1031
BbvI	GCAGC	5 cut(s)	53, 337, 474, 1090, 1187
BccI	CCATC	2 cut(s)	299, 670
BciT130I	CCWGG	2 cut(s)	234, 261
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	907
BcoDI	GTCTC	3 cut(s)	280, 846, 1220
BfaI	CTAG	4 cut(s)	567, 716, 915, 1008
BfmI	CTRYAG	5 cut(s)	39, 546, 876, 1134, 1272
BfuI	GTATCC	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	122
BisI	GCNGC	5 cut(s)	42, 351, 463, 1104, 1176
BlnI	CCTAGG	1 cut(s)	566
BlsI	GCNGC	5 cut(s)	43, 352, 464, 1105, 1177
Bme1390I	CCNGG	2 cut(s)	234, 261
Bme18I	GGWCC	2 cut(s)	9, 230
BmgT120I	GGNCC	5 cut(s)	9, 230, 256, 962, 963
BmiI	GGNNCC	6 cut(s)	10, 258, 265, 502, 789, 964
BmrFI	CCNGG	2 cut(s)	234, 261
BmsI	GCATC	3 cut(s)	53, 433, 723
BoxI	GACNNNNGTC	1 cut(s)	1015
BpiI	GAAGAC	2 cut(s)	186, 1031
BplI	GAGNNNNNCTC	2 cut(s)	856, 888
Bpu10I	CCTNAGC	3 cut(s)	174, 324, 737
Bpu14I	TTCGAA	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	4 cut(s)	233, 259, 566, 1191
Bsc4I	CCNNNNNNNGG	6 cut(s)	511, 551, 572, 590, 851, 1168
Bse21I	CCTNAGG	1 cut(s)	801
Bse3DI	GCAATG	2 cut(s)	151, 1113
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	234, 261
BseDI	CCNNGG	4 cut(s)	233, 259, 566, 1191
BseGI	GGATG	5 cut(s)	85, 416, 562, 738, 976
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	6 cut(s)	511, 551, 572, 590, 851, 1168
BseMI	GCAATG	2 cut(s)	151, 1113
BseMII	CTCAG	5 cut(s)	612, 714, 751, 959, 1011
BseSI	GKGCMC	2 cut(s)	966, 1131
BseXI	GCAGC	5 cut(s)	53, 337, 474, 1090, 1187
BshFI	GGCC	3 cut(s)	125, 257, 964
BshNI	GGYRCC	1 cut(s)	263
BslFI	GGGAC	3 cut(s)	22, 926, 1195
BslI	CCNNNNNNNGG	6 cut(s)	511, 551, 572, 590, 851, 1168
BsmAI	GTCTC	3 cut(s)	280, 846, 1220
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	3 cut(s)	22, 926, 1195
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	3 cut(s)	125, 257, 964
Bsp119I	TTCGAA	1 cut(s)	338
Bsp120I	GGGCCC	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	966, 1131
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	5 cut(s)	500, 907, 931, 1151, 1165
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	3 cut(s)	125, 257, 964
BspCNI	CTCAG	5 cut(s)	613, 715, 750, 958, 1012
BspLI	GGNNCC	6 cut(s)	10, 258, 265, 502, 789, 964
BspMAI	CTGCAG	3 cut(s)	43, 880, 1138
BspPI	GGATC	4 cut(s)	495, 508, 939, 1159
BspQI	GCTCTTC	4 cut(s)	233, 857, 1197, 1233
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	2 cut(s)	151, 1113
BsrGI	TGTACA	1 cut(s)	973
BssECI	CCNNGG	4 cut(s)	233, 259, 566, 1191
BssMI	GATC	5 cut(s)	500, 907, 931, 1151, 1165
BssT1I	CCWWGG	2 cut(s)	566, 1191
Bst2UI	CCWGG	2 cut(s)	234, 261
Bst4CI	ACNGT	3 cut(s)	86, 157, 1126
Bst6I	CTCTTC	5 cut(s)	233, 857, 1008, 1197, 1233
BstAUI	TGTACA	1 cut(s)	973
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	696, 920
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstF5I	GGATG	5 cut(s)	85, 416, 562, 738, 976
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	5 cut(s)	503, 910, 934, 1154, 1168
BstMAI	GTCTC	3 cut(s)	280, 846, 1220
BstMBI	GATC	5 cut(s)	500, 907, 931, 1151, 1165
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 263, 1249
BstNI	CCWGG	2 cut(s)	234, 261
BstNSI	RCATGY	2 cut(s)	668, 1264
BstPAI	GACNNNNGTC	1 cut(s)	1015
BstSCI	CCNGG	2 cut(s)	232, 259
BstSFI	CTRYAG	5 cut(s)	39, 546, 876, 1134, 1272
BstSLI	GKGCMC	2 cut(s)	966, 1131
BstV1I	GCAGC	5 cut(s)	53, 337, 474, 1090, 1187
BstV2I	GAAGAC	2 cut(s)	186, 1031
BstX2I	RGATCY	2 cut(s)	500, 1151
BstYI	RGATCY	2 cut(s)	500, 1151
Bsu36I	CCTNAGG	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	125, 257, 964
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	5 cut(s)	85, 416, 562, 738, 976
BtsI	GCAGTG	2 cut(s)	1050, 1131
BtsIMutI	CAGTG	2 cut(s)	1050, 1131
Cac8I	GCNNGC	2 cut(s)	696, 920
CaiI	CAGNNNCTG	1 cut(s)	884
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	5 cut(s)	9, 230, 256, 962, 963
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	576, 974
CviAII	CATG	2 cut(s)	665, 1261
CviQI	GTAC	2 cut(s)	576, 974
DpnI	GATC	5 cut(s)	502, 909, 933, 1153, 1167
DpnII	GATC	5 cut(s)	500, 907, 931, 1151, 1165
Eam1104I	CTCTTC	5 cut(s)	233, 857, 1008, 1197, 1233
EarI	CTCTTC	5 cut(s)	233, 857, 1008, 1197, 1233
Eco130I	CCWWGG	2 cut(s)	566, 1191
Eco24I	GRGCYC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	9, 230
Eco57I	CTGAAG	4 cut(s)	503, 537, 833, 906
Eco81I	CCTNAGG	1 cut(s)	801
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	4 cut(s)	9, 256, 962, 963
EcoRII	CCWGG	2 cut(s)	232, 259
EcoT14I	CCWWGG	2 cut(s)	566, 1191
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	566, 1191
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	668, 1264
FaiI	YATR	8 cut(s)	29, 225, 591, 642, 666, 1215, 1262, 1274
FalI	AAGNNNNNCTT	2 cut(s)	1079, 1111
FaqI	GGGAC	3 cut(s)	22, 926, 1195
FatI	CATG	2 cut(s)	664, 1260
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	5 cut(s)	42, 351, 463, 1104, 1176
FokI	GGATG	5 cut(s)	92, 403, 549, 745, 963
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	5 cut(s)	42, 351, 463, 1104, 1176
FspBI	CTAG	4 cut(s)	567, 716, 915, 1008
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	5 cut(s)	42, 351, 463, 1104, 1176
HaeIII	GGCC	3 cut(s)	125, 257, 964
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	668, 1264
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	4 cut(s)	389, 508, 524, 1011
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	133, 578, 1078
Hpy188I	TCNGA	6 cut(s)	457, 854, 886, 936, 948, 1021
Hpy188III	TCNNGA	5 cut(s)	716, 739, 785, 929, 1169
Hpy8I	GTNNAC	3 cut(s)	133, 578, 1078
HpyAV	CCTTC	5 cut(s)	22, 247, 466, 512, 545
HpyCH4III	ACNGT	3 cut(s)	86, 157, 1126
HpyCH4IV	ACGT	1 cut(s)	856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 263, 1249
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	2 cut(s)	668, 1264
HspAI	GCGC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	5 cut(s)	500, 907, 931, 1151, 1165
LguI	GCTCTTC	4 cut(s)	233, 857, 1197, 1233
LmnI	GCTCC	3 cut(s)	358, 787, 808
Lsp1109I	GCAGC	5 cut(s)	53, 337, 474, 1090, 1187
LweI	GCATC	3 cut(s)	53, 433, 723
MaeI	CTAG	4 cut(s)	567, 716, 915, 1008
MaeII	ACGT	1 cut(s)	856
MalI	GATC	5 cut(s)	502, 909, 933, 1153, 1167
MboI	GATC	5 cut(s)	500, 907, 931, 1151, 1165
MflI	RGATCY	2 cut(s)	500, 1151
MhlI	GDGCHC	2 cut(s)	966, 1131
MluCI	AATT	6 cut(s)	57, 282, 358, 449, 688, 1098
MlyI	GAGTC	1 cut(s)	1005
MseI	TTAA	5 cut(s)	90, 396, 539, 1068, 1097
MslI	CAYNNNNRTG	2 cut(s)	1218, 1259
MspA1I	CMGCKG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	234, 261
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	2 cut(s)	234, 261
MwoI	GCNNNNNNNGC	3 cut(s)	122, 263, 1249
NdeII	GATC	5 cut(s)	500, 907, 931, 1151, 1165
NlaIII	CATG	2 cut(s)	668, 1264
NlaIV	GGNNCC	6 cut(s)	10, 258, 265, 502, 789, 964
NspI	RCATGY	2 cut(s)	668, 1264
NspV	TTCGAA	1 cut(s)	338
PciSI	GCTCTTC	4 cut(s)	233, 857, 1197, 1233
PcsI	WCGNNNNNNNCGW	1 cut(s)	1230
PctI	GAATGC	1 cut(s)	1123
PfeI	GAWTC	3 cut(s)	389, 508, 524
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	5 cut(s)	43, 352, 464, 1105, 1177
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PpuMI	RGGWCCY	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	1015
Psp5II	RGGWCCY	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	232, 259
PspGI	CCWGG	2 cut(s)	232, 259
PspN4I	GGNNCC	6 cut(s)	10, 258, 265, 502, 789, 964
PspOMI	GGGCCC	1 cut(s)	962
PspPI	GGNCC	5 cut(s)	9, 230, 256, 962, 963
PspPPI	RGGWCCY	1 cut(s)	9
PstI	CTGCAG	3 cut(s)	43, 880, 1138
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	2 cut(s)	500, 1151
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	577, 975
RsaNI	GTAC	2 cut(s)	576, 974
RseI	CAYNNNNRTG	2 cut(s)	1218, 1259
SapI	GCTCTTC	4 cut(s)	233, 857, 1197, 1233
SaqAI	TTAA	5 cut(s)	90, 396, 539, 1068, 1097
SatI	GCNGC	5 cut(s)	42, 351, 463, 1104, 1176
Sau3AI	GATC	5 cut(s)	500, 907, 931, 1151, 1165
Sau96I	GGNCC	5 cut(s)	9, 230, 256, 962, 963
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	2 cut(s)	234, 261
SduI	GDGCHC	2 cut(s)	966, 1131
SfaNI	GCATC	3 cut(s)	53, 433, 723
SfcI	CTRYAG	5 cut(s)	39, 546, 876, 1134, 1272
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	2 cut(s)	9, 230
SmiMI	CAYNNNNRTG	2 cut(s)	1218, 1259
Sse9I	AATT	6 cut(s)	57, 282, 358, 449, 688, 1098
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	4 cut(s)	567, 716, 915, 1008
StyD4I	CCNGG	2 cut(s)	232, 259
StyI	CCWWGG	2 cut(s)	566, 1191
TaaI	ACNGT	3 cut(s)	86, 157, 1126
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	3 cut(s)	287, 338, 1280
TasI	AATT	6 cut(s)	57, 282, 358, 449, 688, 1098
TatI	WGTACW	1 cut(s)	973
TfiI	GAWTC	3 cut(s)	389, 508, 524
Tru1I	TTAA	5 cut(s)	90, 396, 539, 1068, 1097
Tru9I	TTAA	5 cut(s)	90, 396, 539, 1068, 1097
TscAI	CASTG	2 cut(s)	1050, 1138
TseI	GCWGC	5 cut(s)	41, 350, 462, 1103, 1175
TspDTI	ATGAA	6 cut(s)	17, 305, 627, 1065, 1124, 1251
TspGWI	ACGGA	2 cut(s)	47, 1009
TspRI	CASTG	2 cut(s)	1050, 1138
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	9, 230
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	1 cut(s)	358
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	2 cut(s)	668, 1264
XmaJI	CCTAGG	1 cut(s)	566
XspI	CTAG	4 cut(s)	567, 716, 915, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.