Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Reverse (-)

10516776 .. 10521093

Gene Structure 4318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGAAAAGCAAAGATGGAAATGATGCAGAGGCTACAGCTACTGTTTCCAATGGTTCAGCAGGTCCAAATTCACTCGCCAAGCAGCCTAACAAGAGTAGATCATTGAATGGCCAACAGCAGCAACCTAAACAATCTGAGGCACCATCAACTGAAGGCCTTGTGGAGGAGACAAATCTGAAGCCACTAAACAAAGGCTCCTATAATAAGGCTGATGGAGACTCCCAATCTTCTTTAAGTCCCACGGAAGGAGAAATGAAAGCACCTAGGGTGGGTACACTGCCAAAGTATGGTTTCAGCTTTAAGTGTGATGAAAGAGCTGAGAAGAGAAGAGAGTTCTACACCAAACTTGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATTAAGATGCTCAGGAAGAAGCTGACTTTTAAAGCAACTCCAATGCCAAGCTTTTATCAGGAGCCTCCGCCTCCTAAGGTGGAGCTAAAGAAGTTACCAACAACAAGAGCCAAGTCTCCCAAGCTCGGCCGCAGGAAGAGCTTACCTCCAGCAGATTCTGAAGGAAACAGTAATACTAAGAGTCAATCTGGCAGGCTTAGTCTGGGTGAGAAACTTCCTCAAAACTCTGCCAAAGGACCTTCTCCTGTGCATCCAAAGAAGCCACAAAGAAAGTCTCTTCCTAGACTTCCGTCTGAGAAGACCACTTTATCTAATGTGAAGAGTGTGCGGAAGGTTACTTCTAAGGCAACAAACGAGGAAAAGGCTGCCGTGTTGCCCAATGCAACAAGTGAAGCTGGACCTCACACCCAAGAGCAGGAGGCAGTTCCCAGAGCTGAGATAACTGAACCCTACAGCCAAGAGCCGGAAGCAGTTCCCAGGGCTGCAATAAGTGAGGAGCAGTCCCATTCAGATGATGAGACAGTTAATGAAGAGGAACATCACCCCACCTTGGTTCAAGAGCCTATAGCGCTGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

335

Amino Acids

36.8

Weight (kDa)

9.22

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	99 - 169	2.7e-27	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	3 cut(s)	494, 556, 754
AcoI	YGGCCR	2 cut(s)	112, 553
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	3 cut(s)	174, 200, 606
AfaI	GTAC	1 cut(s)	277
AfeI	AGCGCT	1 cut(s)	996
AfiI	CCNNNNNNNGG	8 cut(s)	166, 248, 272, 290, 551, 841, 889, 976
AgsI	TTSAA	2 cut(s)	109, 983
AjnI	CCWGG	1 cut(s)	902
Alw26I	GTCTC	5 cut(s)	164, 213, 546, 705, 938
AlwNI	CAGNNNCTG	2 cut(s)	44, 584
Aor51HI	AGCGCT	1 cut(s)	996
AoxI	GGCC	3 cut(s)	112, 157, 553
ApeKI	GCWGC	4 cut(s)	85, 121, 791, 908
ApoI	RAATTY	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	897
AspA2I	CCTAGG	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	997
AspS9I	GGNCC	3 cut(s)	65, 662, 824
AsuHPI	GGTGA	2 cut(s)	644, 959
AvaII	GGWCC	3 cut(s)	65, 662, 824
AvrII	CCTAGG	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	501
BalI	TGGCCA	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	731
BbvI	GCAGC	4 cut(s)	97, 133, 778, 895
BccI	CCATC	4 cut(s)	11, 154, 209, 370
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	1 cut(s)	904
BcoDI	GTCTC	5 cut(s)	164, 213, 546, 705, 938
BfaI	CTAG	3 cut(s)	267, 416, 708
BfmI	CTRYAG	3 cut(s)	36, 877, 990
BfoI	RGCGCY	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	5 cut(s)	86, 122, 556, 792, 909
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	5 cut(s)	87, 123, 557, 793, 910
Bme1390I	CCNGG	1 cut(s)	904
Bme18I	GGWCC	3 cut(s)	65, 662, 824
BmgT120I	GGNCC	3 cut(s)	65, 662, 824
BmiI	GGNNCC	3 cut(s)	144, 199, 489
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	3 cut(s)	16, 423, 685
BoxI	GACNNNNGTC	1 cut(s)	715
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	5 cut(s)	243, 266, 902, 903, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	8 cut(s)	166, 248, 272, 290, 551, 841, 889, 976
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	904
BseDI	CCNNGG	5 cut(s)	243, 266, 902, 903, 975
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	8 cut(s)	166, 248, 272, 290, 551, 841, 889, 976
BseMII	CTCAG	6 cut(s)	129, 312, 414, 451, 711, 852
BseRI	GAGGAG	2 cut(s)	182, 935
BseX3I	CGGCCG	1 cut(s)	553
BseXI	GCAGC	4 cut(s)	97, 133, 778, 895
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	3 cut(s)	114, 159, 555
BshNI	GGYRCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	890
BslFI	GGGAC	2 cut(s)	225, 913
BslI	CCNNNNNNNGG	8 cut(s)	166, 248, 272, 290, 551, 841, 889, 976
BsmAI	GTCTC	5 cut(s)	164, 213, 546, 705, 938
BsmFI	GGGAC	2 cut(s)	225, 913
BsnI	GGCC	3 cut(s)	114, 159, 555
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	3 cut(s)	494, 556, 754
BspANI	GGCC	3 cut(s)	114, 159, 555
BspCNI	CTCAG	6 cut(s)	130, 313, 415, 450, 712, 853
BspLI	GGNNCC	3 cut(s)	144, 199, 489
BspMI	ACCTGC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	142
BssECI	CCNNGG	5 cut(s)	243, 266, 902, 903, 975
BssMI	GATC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	266, 975
Bst2UI	CCWGG	1 cut(s)	904
Bst4CI	ACNGT	3 cut(s)	46, 596, 949
Bst6I	CTCTTC	6 cut(s)	320, 325, 557, 708, 740, 951
BstC8I	GCNNGC	2 cut(s)	396, 620
BstDSI	CCRYGG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	1 cut(s)	997
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	5 cut(s)	164, 213, 546, 705, 938
BstMBI	GATC	1 cut(s)	101
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	2 cut(s)	564, 994
BstNI	CCWGG	1 cut(s)	904
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	3 cut(s)	36, 877, 990
BstV1I	GCAGC	4 cut(s)	97, 133, 778, 895
BstV2I	GAAGAC	1 cut(s)	731
BstZI	CGGCCG	1 cut(s)	553
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	114, 159, 555
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	278
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	396, 620
CaiI	CAGNNNCTG	2 cut(s)	44, 584
CfoI	GCGC	1 cut(s)	997
Cfr13I	GGNCC	3 cut(s)	65, 662, 824
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DraI	TTTAAA	1 cut(s)	457
EaeI	YGGCCR	2 cut(s)	112, 553
EagI	CGGCCG	1 cut(s)	553
Eam1104I	CTCTTC	6 cut(s)	320, 325, 557, 708, 740, 951
EarI	CTCTTC	6 cut(s)	320, 325, 557, 708, 740, 951
EciI	GGCGGA	1 cut(s)	483
EclXI	CGGCCG	1 cut(s)	553
Eco130I	CCWWGG	2 cut(s)	266, 975
Eco147I	AGGCCT	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	65, 662, 824
Eco47III	AGCGCT	1 cut(s)	996
Eco52I	CGGCCG	1 cut(s)	553
Eco57I	CTGAAG	3 cut(s)	174, 200, 606
Eco81I	CCTNAGG	1 cut(s)	501
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	902
EcoT14I	CCWWGG	2 cut(s)	266, 975
ErhI	CCWWGG	2 cut(s)	266, 975
FaeI	CATG	1 cut(s)	368
FaiI	YATR	4 cut(s)	204, 291, 366, 992
FaqI	GGGAC	2 cut(s)	225, 913
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	86, 122, 556, 792, 909
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	5 cut(s)	86, 122, 556, 792, 909
FspBI	CTAG	3 cut(s)	267, 416, 708
GlaI	GCGC	1 cut(s)	996
GluI	GCNGC	5 cut(s)	86, 122, 556, 792, 909
GsuI	CTGGAG	1 cut(s)	558
HaeII	RGCGCY	1 cut(s)	998
HaeIII	GGCC	3 cut(s)	114, 159, 555
HapII	CCGG	1 cut(s)	890
HhaI	GCGC	1 cut(s)	997
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	995
HinP1I	GCGC	1 cut(s)	995
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	221, 581, 607
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	2 cut(s)	644, 959
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	5 cut(s)	139, 180, 586, 721, 937
Hpy188III	TCNNGA	4 cut(s)	416, 439, 485, 983
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	149, 242, 581, 675, 751
HpyCH4III	ACNGT	3 cut(s)	46, 596, 949
HpyCH4V	TGCA	6 cut(s)	29, 368, 394, 676, 809, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	564, 994
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	995
Kzo9I	GATC	1 cut(s)	101
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	4 cut(s)	203, 487, 508, 922
Lsp1109I	GCAGC	4 cut(s)	97, 133, 778, 895
LweI	GCATC	3 cut(s)	16, 423, 685
MaeI	CTAG	3 cut(s)	267, 416, 708
MaeIII	GTNAC	2 cut(s)	519, 760
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	3 cut(s)	70, 388, 1003
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	2 cut(s)	215, 616
Mox20I	TGGCCA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	897
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	5 cut(s)	236, 303, 429, 456, 951
MslI	CAYNNNNRTG	1 cut(s)	936
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	904
MwoI	GCNNNNNNNGC	2 cut(s)	564, 994
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	3 cut(s)	144, 199, 489
NmeAIII	GCCGAG	1 cut(s)	531
NspI	RCATGY	1 cut(s)	368
PasI	CCCWGGG	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	557
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	87, 123, 557, 793, 910
PleI	GAGTC	2 cut(s)	215, 615
PpsI	GAGTC	2 cut(s)	215, 615
PpuMI	RGGWCCY	1 cut(s)	662
PshAI	GACNNNNGTC	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	902
PspN4I	GGNNCC	3 cut(s)	144, 199, 489
PspPI	GGNCC	3 cut(s)	65, 662, 824
PspPPI	RGGWCCY	1 cut(s)	662
PstNI	CAGNNNCTG	2 cut(s)	44, 584
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	936
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	5 cut(s)	236, 303, 429, 456, 951
SatI	GCNGC	5 cut(s)	86, 122, 556, 792, 909
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	3 cut(s)	65, 662, 824
SchI	GAGTC	2 cut(s)	215, 616
ScrFI	CCNGG	1 cut(s)	904
SfaNI	GCATC	3 cut(s)	16, 423, 685
SfcI	CTRYAG	3 cut(s)	36, 877, 990
SinI	GGWCC	3 cut(s)	65, 662, 824
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	70, 388, 1003
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	3 cut(s)	494, 556, 754
SspMI	CTAG	3 cut(s)	267, 416, 708
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	902
StyI	CCWWGG	2 cut(s)	266, 975
TaaI	ACNGT	3 cut(s)	46, 596, 949
TasI	AATT	3 cut(s)	70, 388, 1003
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	5 cut(s)	236, 303, 429, 456, 951
Tru9I	TTAA	5 cut(s)	236, 303, 429, 456, 951
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	4 cut(s)	85, 121, 791, 908
TspDTI	ATGAA	4 cut(s)	17, 272, 327, 969
TspGWI	ACGGA	2 cut(s)	260, 705
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	3 cut(s)	65, 662, 824
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	368
XmaJI	CCTAGG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	3 cut(s)	267, 416, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.