Rw6G033850

Targeting protein for Xklp2 (TPX2)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
58438085 .. 58441519
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033850.1

Sequence Viewer

Length: 1392 bp
ATGGATTCGGATAATTTGGAAGCCGCCTATGGGCTTCAGGTTGCTCTTGAAAATGGTGGTCATGGGCAACTTAGTGTTGGTCCAGACGGCACTAATGGGAGTGCCGGTGAAACTACTCTTACCGAGACTGCAGCACCGAATGGGAGAATTGAAAGTGTGGTGAACTCGGATGATGGTGTGTCTTATAATTCATCTGCTGGAGAAGTCAAAGAGGAATCCAGTGTCAACTCTGCAAGCAATGGTTTGACTATTGCTAAGGAAAGGGGACCGAAAGTTTCTGTTCAGTCAAAGCAATCCAGAGTGCAGAAGGGTCAAGGTAAGAGTAAGATTGAGAAGCCCCCTAGTCCCAAGAGCGCCTTGCCAATTCGGATGAAGAAAAGCAAAGATGGAAATGATGCAGAGGCTACAGCTACTGTTTCCAATGGTTCAGCAGGTCCAAATTCACTCGCCAAGCAGCCTAACAAGAGTAGATCATTGAATGGCCAACAGGTTCAGTTATCCAATCAGCAACCTAAACAATCTGAGGCACCATCGACTGAAGGCCTTGTGGAGGAGACAAATCTGAAGCCGCTAAACAAAGGCTCCTATAATAAGGCTGATGGAGACTCCCAATCTTCTTTAAGTCCCACGGAAGGAGATATGAAAGCACCTAGGGTGGGTACACTGCCAAAGTATGGTTTCAGCTTTAAGTGTGATGAAAGAGCTGAGAAAAGAAGAGAGTTCTACACCAAACTTGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATTAAGATGCTCAGGAAGAAGCTGACTTTTAAAGCAACTCCAATGCCAAGCTTTTATCAGGAGCCTCCGCCTCCTAAGGTGGAGCTAAAGAAGTTACCAACAACAAGAGCCAAGTCTCCCAAGCTCGGCCGCAGGAAGAGCTTACCTCCAGCAGATTCTGGAGGAAACAGTAATACCAAGAGTCAATCTGGCAGGCTTAGTCTGGGTGAAAAACTTCCTCAAAACTCTGCCAAAGGACCTTCTCCTGTGCATCCAAAGAAGCCACAAAGAAAGTCTCTTCCTAGACTTCCATCTGAGAAGACCACTTTATCTAATGTGAAGAGTGTGCGGAAGGTTGCTTCTAAGGCAACAAACGAGGAAAAGGCTGCCGCGTTGCCCAATGCAACAAGTGAAGCTGGACCTCACACCCAAGAGCAGGAGGCAGTTCCCAGAGCTGAGATAACTGAACCCTACAGCCAAGAGCCGGAAGCAGTTCCCAGGGCTGCAATAAGTGAGGAGCAGTCCCATTCAGATGATGAGACAGTTAATGAAGAGGAACATCATCCCACCTTGGTTCAAGAGCCTATAGCGCTGGAGAATTGA

Protein Analysis

463

Amino Acids

49.78

Weight (kDa)

9.03

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 227 - 297 4.5e-27 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 674
AccII CGCG 1 cut(s) 1181
AciI CCGC 6 cut(s) 24, 569, 878, 940, 1138, 1179
AcoI YGGCCR 2 cut(s) 481, 937
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 3 cut(s) 20, 558, 584
AfaI GTAC 1 cut(s) 661
AfeI AGCGCT 1 cut(s) 1380
AfiI CCNNNNNNNGG 8 cut(s) 30, 550, 632, 656, 674, 935, 1225, 1273
AgsI TTSAA 4 cut(s) 50, 152, 478, 1367
AjnI CCWGG 1 cut(s) 1286
Alw26I GTCTC 6 cut(s) 119, 548, 597, 930, 1089, 1322
AlwNI CAGNNNCTG 2 cut(s) 413, 968
Aor51HI AGCGCT 1 cut(s) 1380
AoxI GGCC 3 cut(s) 481, 541, 937
ApeKI GCWGC 4 cut(s) 131, 454, 1175, 1292
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 2 cut(s) 1023, 1281
AspA2I CCTAGG 1 cut(s) 650
AspLEI GCGC 2 cut(s) 356, 1381
AspS9I GGNCC 5 cut(s) 80, 266, 434, 1046, 1208
AsuHPI GGTGA 3 cut(s) 119, 172, 1028
AvaII GGWCC 5 cut(s) 80, 266, 434, 1046, 1208
AvrII CCTAGG 1 cut(s) 650
AxyI CCTNAGG 1 cut(s) 885
BalI TGGCCA 1 cut(s) 483
BanI GGYRCC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 1115
BbvI GCAGC 4 cut(s) 143, 466, 1162, 1279
BccI CCATC 6 cut(s) 167, 380, 538, 593, 754, 1108
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 1288
BcoDI GTCTC 6 cut(s) 119, 548, 597, 930, 1089, 1322
BfaI CTAG 4 cut(s) 342, 651, 800, 1092
BfmI CTRYAG 4 cut(s) 129, 405, 1261, 1374
BfoI RGCGCY 2 cut(s) 357, 1382
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 8 cut(s) 24, 132, 455, 569, 940, 1176, 1179, 1293
BlnI CCTAGG 1 cut(s) 650
BlsI GCNGC 8 cut(s) 25, 133, 456, 570, 941, 1177, 1180, 1294
Bme1390I CCNGG 1 cut(s) 1288
Bme18I GGWCC 5 cut(s) 80, 266, 434, 1046, 1208
BmgT120I GGNCC 5 cut(s) 80, 266, 434, 1046, 1208
BmiI GGNNCC 4 cut(s) 267, 528, 583, 873
BmrFI CCNGG 1 cut(s) 1288
BmsI GCATC 3 cut(s) 385, 807, 1069
BpiI GAAGAC 1 cut(s) 1115
BplI GAGNNNNNCTC 2 cut(s) 940, 972
BpmI CTGGAG 3 cut(s) 219, 942, 990
Bpu10I CCTNAGC 2 cut(s) 255, 821
BpuEI CTTGAG 1 cut(s) 755
BsaJI CCNNGG 5 cut(s) 627, 650, 1286, 1287, 1359
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 566, 596
Bsc4I CCNNNNNNNGG 8 cut(s) 30, 550, 632, 656, 674, 935, 1225, 1273
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 885
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 1288
BseDI CCNNGG 5 cut(s) 627, 650, 1286, 1287, 1359
BseGI GGATG 4 cut(s) 175, 375, 1060, 1351
BseLI CCNNNNNNNGG 8 cut(s) 30, 550, 632, 656, 674, 935, 1225, 1273
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 6 cut(s) 513, 696, 798, 835, 1095, 1236
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 566, 1319
BseX3I CGGCCG 1 cut(s) 937
BseXI GCAGC 4 cut(s) 143, 466, 1162, 1279
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 1181
Bsh1285I CGRYCG 1 cut(s) 940
BshFI GGCC 3 cut(s) 483, 543, 939
BshNI GGYRCC 1 cut(s) 526
BsiEI CGRYCG 1 cut(s) 940
BsiSI CCGG 2 cut(s) 105, 1274
BslFI GGGAC 4 cut(s) 279, 330, 609, 1297
BslI CCNNNNNNNGG 8 cut(s) 30, 550, 632, 656, 674, 935, 1225, 1273
BsmAI GTCTC 6 cut(s) 119, 548, 597, 930, 1089, 1322
BsmFI GGGAC 4 cut(s) 279, 330, 609, 1297
BsnI GGCC 3 cut(s) 483, 543, 939
Bsp143I GATC 1 cut(s) 470
BspACI CCGC 6 cut(s) 24, 569, 878, 940, 1138, 1179
BspANI GGCC 3 cut(s) 483, 543, 939
BspCNI CTCAG 6 cut(s) 514, 697, 799, 834, 1096, 1237
BspFNI CGCG 1 cut(s) 1181
BspLI GGNNCC 4 cut(s) 267, 528, 583, 873
BspMAI CTGCAG 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 5 cut(s) 627, 650, 1286, 1287, 1359
BssMI GATC 1 cut(s) 470
BssT1I CCWWGG 2 cut(s) 650, 1359
Bst2UI CCWGG 1 cut(s) 1288
Bst4CI ACNGT 3 cut(s) 415, 980, 1333
Bst6I CTCTTC 5 cut(s) 709, 941, 1092, 1124, 1335
BstC8I GCNNGC 3 cut(s) 235, 780, 1004
BstDSI CCRYGG 1 cut(s) 627
BstENI CCTNNNNNAGG 1 cut(s) 548
BstF5I GGATG 4 cut(s) 175, 375, 1060, 1351
BstFNI CGCG 1 cut(s) 1181
BstH2I RGCGCY 2 cut(s) 357, 1382
BstHHI GCGC 2 cut(s) 356, 1381
BstKTI GATC 1 cut(s) 473
BstMAI GTCTC 6 cut(s) 119, 548, 597, 930, 1089, 1322
BstMBI GATC 1 cut(s) 470
BstMCI CGRYCG 1 cut(s) 940
BstMWI GCNNNNNNNGC 3 cut(s) 948, 1154, 1378
BstNI CCWGG 1 cut(s) 1288
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 1286
BstSFI CTRYAG 4 cut(s) 129, 405, 1261, 1374
BstUI CGCG 1 cut(s) 1181
BstV1I GCAGC 4 cut(s) 143, 466, 1162, 1279
BstV2I GAAGAC 1 cut(s) 1115
BstZI CGGCCG 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 885
BsuRI GGCC 3 cut(s) 483, 543, 939
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 4 cut(s) 175, 375, 1060, 1351
BtsI GCAGTG 1 cut(s) 662
BtsIMutI CAGTG 2 cut(s) 226, 662
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 235, 780, 1004
CaiI CAGNNNCTG 2 cut(s) 413, 968
CfoI GCGC 2 cut(s) 356, 1381
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 5 cut(s) 80, 266, 434, 1046, 1208
Csp6I GTAC 1 cut(s) 660
CviAII CATG 2 cut(s) 62, 749
CviQI GTAC 1 cut(s) 660
DpnI GATC 1 cut(s) 472
DpnII GATC 1 cut(s) 470
DraI TTTAAA 1 cut(s) 841
EaeI YGGCCR 2 cut(s) 481, 937
EagI CGGCCG 1 cut(s) 937
Eam1104I CTCTTC 5 cut(s) 709, 941, 1092, 1124, 1335
EarI CTCTTC 5 cut(s) 709, 941, 1092, 1124, 1335
EciI GGCGGA 1 cut(s) 867
EclXI CGGCCG 1 cut(s) 937
Eco130I CCWWGG 2 cut(s) 650, 1359
Eco147I AGGCCT 1 cut(s) 543
Eco47I GGWCC 5 cut(s) 80, 266, 434, 1046, 1208
Eco47III AGCGCT 1 cut(s) 1380
Eco52I CGGCCG 1 cut(s) 937
Eco57I CTGAAG 3 cut(s) 20, 558, 584
Eco81I CCTNAGG 1 cut(s) 885
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 1286
EcoT14I CCWWGG 2 cut(s) 650, 1359
ErhI CCWWGG 2 cut(s) 650, 1359
FaeI CATG 2 cut(s) 65, 752
FaiI YATR 8 cut(s) 30, 63, 186, 588, 641, 675, 750, 1376
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 4 cut(s) 279, 330, 609, 1297
FatI CATG 2 cut(s) 61, 748
Fnu4HI GCNGC 8 cut(s) 24, 132, 455, 569, 940, 1176, 1179, 1293
FokI GGATG 4 cut(s) 182, 382, 1047, 1338
Fsp4HI GCNGC 8 cut(s) 24, 132, 455, 569, 940, 1176, 1179, 1293
FspBI CTAG 4 cut(s) 342, 651, 800, 1092
GlaI GCGC 2 cut(s) 355, 1380
GluI GCNGC 8 cut(s) 24, 132, 455, 569, 940, 1176, 1179, 1293
GsuI CTGGAG 3 cut(s) 219, 942, 990
HaeII RGCGCY 2 cut(s) 357, 1382
HaeIII GGCC 3 cut(s) 483, 543, 939
HapII CCGG 2 cut(s) 105, 1274
HhaI GCGC 2 cut(s) 356, 1381
Hin1II CATG 2 cut(s) 65, 752
Hin6I GCGC 2 cut(s) 354, 1379
HinP1I GCGC 2 cut(s) 354, 1379
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 5 cut(s) 5, 215, 605, 965, 991
HpaII CCGG 2 cut(s) 105, 1274
HphI GGTGA 3 cut(s) 119, 172, 1028
Hpy166II GTNNAC 3 cut(s) 163, 226, 662
Hpy188I TCNGA 7 cut(s) 10, 169, 369, 523, 564, 1105, 1321
Hpy188III TCNNGA 8 cut(s) 47, 83, 297, 800, 823, 869, 969, 1367
Hpy8I GTNNAC 3 cut(s) 163, 226, 662
HpyAV CCTTC 5 cut(s) 301, 533, 626, 1059, 1135
HpyCH4III ACNGT 3 cut(s) 415, 980, 1333
HpyCH4V TGCA 9 cut(s) 131, 233, 304, 398, 752, 778, 1060, 1193, 1295
HpyF10VI GCNNNNNNNGC 3 cut(s) 948, 1154, 1378
Hsp92II CATG 2 cut(s) 65, 752
HspAI GCGC 2 cut(s) 354, 1379
Kzo9I GATC 1 cut(s) 470
LguI GCTCTTC 1 cut(s) 941
LmnI GCTCC 4 cut(s) 587, 871, 892, 1306
Lsp1109I GCAGC 4 cut(s) 143, 466, 1162, 1279
LweI GCATC 3 cut(s) 385, 807, 1069
MaeI CTAG 4 cut(s) 342, 651, 800, 1092
MaeIII GTNAC 1 cut(s) 903
MalI GATC 1 cut(s) 472
MboI GATC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 7 cut(s) 13, 147, 187, 363, 439, 772, 1387
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 2 cut(s) 599, 1000
Mox20I TGGCCA 1 cut(s) 483
MroXI GAANNNNTTC 2 cut(s) 1023, 1281
MscI TGGCCA 1 cut(s) 483
MseI TTAA 5 cut(s) 620, 687, 813, 840, 1335
MslI CAYNNNNRTG 1 cut(s) 1320
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 2 cut(s) 105, 1274
MspR9I CCNGG 1 cut(s) 1288
MvaI CCWGG 1 cut(s) 1288
MvnI CGCG 1 cut(s) 1181
MwoI GCNNNNNNNGC 3 cut(s) 948, 1154, 1378
NdeII GATC 1 cut(s) 470
NlaIII CATG 2 cut(s) 65, 752
NlaIV GGNNCC 4 cut(s) 267, 528, 583, 873
NmeAIII GCCGAG 1 cut(s) 915
NspI RCATGY 1 cut(s) 752
PasI CCCWGGG 1 cut(s) 1287
PceI AGGCCT 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 941
PdmI GAANNNNTTC 2 cut(s) 1023, 1281
PfeI GAWTC 3 cut(s) 5, 215, 965
PflMI CCANNNNNTGG 1 cut(s) 674
PkrI GCNGC 8 cut(s) 25, 133, 456, 570, 941, 1177, 1180, 1294
PleI GAGTC 2 cut(s) 599, 999
PpsI GAGTC 2 cut(s) 599, 999
PpuMI RGGWCCY 1 cut(s) 1046
PsiI TTATAA 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 1046
Psp6I CCWGG 1 cut(s) 1286
PspGI CCWGG 1 cut(s) 1286
PspN4I GGNNCC 4 cut(s) 267, 528, 583, 873
PspPI GGNCC 5 cut(s) 80, 266, 434, 1046, 1208
PspPPI RGGWCCY 1 cut(s) 1046
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 2 cut(s) 413, 968
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 1 cut(s) 1320
SapI GCTCTTC 1 cut(s) 941
SaqAI TTAA 5 cut(s) 620, 687, 813, 840, 1335
SatI GCNGC 8 cut(s) 24, 132, 455, 569, 940, 1176, 1179, 1293
Sau3AI GATC 1 cut(s) 470
Sau96I GGNCC 5 cut(s) 80, 266, 434, 1046, 1208
SchI GAGTC 2 cut(s) 599, 1000
ScrFI CCNGG 1 cut(s) 1288
SfaNI GCATC 3 cut(s) 385, 807, 1069
SfcI CTRYAG 4 cut(s) 129, 405, 1261, 1374
SinI GGWCC 5 cut(s) 80, 266, 434, 1046, 1208
SmiMI CAYNNNNRTG 1 cut(s) 1320
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 7 cut(s) 13, 147, 187, 363, 439, 772, 1387
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 6 cut(s) 24, 569, 878, 940, 1138, 1179
SspMI CTAG 4 cut(s) 342, 651, 800, 1092
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 1286
StyI CCWWGG 2 cut(s) 650, 1359
TaaI ACNGT 3 cut(s) 415, 980, 1333
TaqI TCGA 1 cut(s) 533
TaqII GACCGA 1 cut(s) 283
TasI AATT 7 cut(s) 13, 147, 187, 363, 439, 772, 1387
TauI GCSGC 4 cut(s) 26, 571, 942, 1181
TfiI GAWTC 3 cut(s) 5, 215, 965
Tru1I TTAA 5 cut(s) 620, 687, 813, 840, 1335
Tru9I TTAA 5 cut(s) 620, 687, 813, 840, 1335
TscAI CASTG 2 cut(s) 226, 669
TseI GCWGC 4 cut(s) 131, 454, 1175, 1292
TspDTI ATGAA 5 cut(s) 180, 386, 656, 711, 1353
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 2 cut(s) 226, 669
Van91I CCANNNNNTGG 1 cut(s) 674
VpaK11BI GGWCC 5 cut(s) 80, 266, 434, 1046, 1208
XagI CCTNNNNNAGG 1 cut(s) 548
XapI RAATTY 1 cut(s) 439
XbaI TCTAGA 1 cut(s) 799
XceI RCATGY 1 cut(s) 752
XmaJI CCTAGG 1 cut(s) 650
XmnI GAANNNNTTC 2 cut(s) 1023, 1281
XspI CTAG 4 cut(s) 342, 651, 800, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.