Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Forward (+)

58698438 .. 58701727

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG387800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTTTCAGGGCAACTTGCCTTGAAAGATCCTCCCTTTTTCCGGGTTCGGATCCTCCGATCCGCCTCCGCCGTCGCCACTGTCTCGCCGCGACTCTCAGATCCTTCAAGGCATGGACTTCTGACTGCCGCACGCTCAACGAGTTTCGTGTGTGTCATGGATTCGGATAATTTGGAAGCCGCCTATGGGCTTCAGGTTGCTCTTGAAAATGGTGGTCATGGGCAACCTAGTGTTGGTCCGGACGGCATGAATGGGAGTGCCGGTGAAACTACTCTTACCGAGACTGCAGCACCGAATGGGAGAATTGAAAATGTGGTGAACTCGGATGATGGTGTGTCTTATAATTCATCTGCTGGAGAAGTCAAAGAGGAATCCAGTGTCAACTCTGCAAGCAATGGTTTGACTATTGCTAAGGAAAGGGGACTGAAAGTTTCTGTTCAGTCAAAGCAATCCAGAGTGCAGAAGGGTCAAGGTAAGAGTAAGATTGAGAAGCCCCCTAGTCCCAAGAGCGCCTTGCCAATTCGGATGAAGAAAAGCAAAGATGGAAATGATGCAGAGGCTACAGCTACTGTTTCCAATGGTTCAGCAGGTCCAAATTCACTCGCCAAGCAGCCTAACAAGAGTAGATCATTGAATGGCCAACAGGTTCAGTTATCCAATGTAAATATTAATAGTTATGCTTGGTTCCTTTCTTTTGTAGCTTGCCCTGTCTTTGTAACACTTCTACTTTGTTTGATTTTGATAACTGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

251

Amino Acids

26.34

Weight (kDa)

9.15

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	578
AccII	CGCG	1 cut(s)	91
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	5 cut(s)	63, 69, 89, 129, 180
AclWI	GGATC	5 cut(s)	23, 46, 54, 59, 95
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	42, 186, 233
AgsI	TTSAA	5 cut(s)	25, 108, 206, 308, 634
AluBI	AGCT	2 cut(s)	566, 701
AluI	AGCT	2 cut(s)	566, 701
Alw26I	GTCTC	2 cut(s)	88, 275
AlwI	GGATC	5 cut(s)	23, 46, 54, 59, 95
AlwNI	CAGNNNCTG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	287, 610
ApoI	RAATTY	1 cut(s)	595
AseI	ATTAAT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	2 cut(s)	236, 590
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	275, 328
AvaII	GGWCC	2 cut(s)	236, 590
BalI	TGGCCA	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	299, 622
BccI	CCATC	2 cut(s)	323, 536
BceAI	ACGGC	2 cut(s)	56, 259
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	88, 275
BfaI	CTAG	2 cut(s)	228, 498
BfmI	CTRYAG	2 cut(s)	285, 561
BfoI	RGCGCY	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	578
BisI	GCNGC	5 cut(s)	89, 129, 180, 288, 611
BlsI	GCNGC	5 cut(s)	90, 130, 181, 289, 612
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	236, 590
BmgT120I	GGNCC	2 cut(s)	236, 590
BmiI	GGNNCC	2 cut(s)	53, 686
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	375
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 186, 233
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	238
BseGI	GGATG	2 cut(s)	331, 531
BseLI	CCNNNNNNNGG	3 cut(s)	42, 186, 233
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	299, 622
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	639
BsiSI	CCGG	3 cut(s)	43, 239, 261
BslFI	GGGAC	2 cut(s)	435, 486
BslI	CCNNNNNNNGG	3 cut(s)	42, 186, 233
BsmAI	GTCTC	2 cut(s)	88, 275
BsmFI	GGGAC	2 cut(s)	435, 486
BsnI	GGCC	1 cut(s)	639
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	5 cut(s)	28, 51, 59, 100, 626
BspACI	CCGC	5 cut(s)	63, 69, 89, 129, 180
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	110
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	53, 686
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	5 cut(s)	23, 46, 54, 59, 95
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	260
BssMI	GATC	5 cut(s)	28, 51, 59, 100, 626
Bst4CI	ACNGT	2 cut(s)	82, 571
BstC8I	GCNNGC	3 cut(s)	133, 391, 703
BstDEI	CTNAG	2 cut(s)	97, 411
BstF5I	GGATG	2 cut(s)	331, 531
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	5 cut(s)	31, 54, 62, 103, 629
BstMAI	GTCTC	2 cut(s)	88, 275
BstMBI	GATC	5 cut(s)	28, 51, 59, 100, 626
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	2 cut(s)	285, 561
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	299, 622
BstX2I	RGATCY	3 cut(s)	28, 51, 100
BstYI	RGATCY	3 cut(s)	28, 51, 100
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	331, 531
BtsIMutI	CAGTG	2 cut(s)	78, 382
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	133, 391, 703
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	236, 590
CviAII	CATG	4 cut(s)	113, 157, 218, 247
CviJI	RGCY	8 cut(s)	179, 190, 493, 560, 566, 613, 639, 701
CviKI_1	RGCY	8 cut(s)	179, 190, 493, 560, 566, 613, 639, 701
DdeI	CTNAG	2 cut(s)	97, 411
DpnI	GATC	5 cut(s)	30, 53, 61, 102, 628
DpnII	GATC	5 cut(s)	28, 51, 59, 100, 626
EaeI	YGGCCR	1 cut(s)	637
EciI	GGCGGA	2 cut(s)	52, 58
Eco47I	GGWCC	2 cut(s)	236, 590
Eco57I	CTGAAG	1 cut(s)	176
FaeI	CATG	4 cut(s)	116, 160, 221, 250
FaiI	YATR	7 cut(s)	114, 158, 186, 219, 248, 342, 678
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	2 cut(s)	435, 486
FatI	CATG	4 cut(s)	112, 156, 217, 246
Fnu4HI	GCNGC	5 cut(s)	89, 129, 180, 288, 611
FokI	GGATG	2 cut(s)	338, 538
Fsp4HI	GCNGC	5 cut(s)	89, 129, 180, 288, 611
FspBI	CTAG	2 cut(s)	228, 498
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	5 cut(s)	89, 129, 180, 288, 611
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	3 cut(s)	43, 239, 261
HhaI	GCGC	1 cut(s)	512
Hin1II	CATG	4 cut(s)	116, 160, 221, 250
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	93, 161, 371
HpaII	CCGG	3 cut(s)	43, 239, 261
HphI	GGTGA	2 cut(s)	275, 328
Hpy166II	GTNNAC	2 cut(s)	319, 382
Hpy188I	TCNGA	8 cut(s)	51, 59, 100, 123, 166, 325, 525, 755
Hpy188III	TCNNGA	3 cut(s)	203, 239, 453
Hpy8I	GTNNAC	2 cut(s)	319, 382
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	114, 457
HpyCH4III	ACNGT	2 cut(s)	82, 571
HpyCH4V	TGCA	4 cut(s)	287, 389, 460, 554
HpyF3I	CTNAG	2 cut(s)	97, 411
Hsp92II	CATG	4 cut(s)	116, 160, 221, 250
HspAI	GCGC	1 cut(s)	510
Kpn2I	TCCGGA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	28, 51, 59, 100, 626
Lsp1109I	GCAGC	2 cut(s)	299, 622
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	228, 498
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	5 cut(s)	30, 53, 61, 102, 628
MboI	GATC	5 cut(s)	28, 51, 59, 100, 626
MboII	GAAGA	1 cut(s)	541
MflI	RGATCY	3 cut(s)	28, 51, 100
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	5 cut(s)	169, 303, 343, 519, 595
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	42, 65, 76, 361, 550
Mox20I	TGGCCA	1 cut(s)	639
MroI	TCCGGA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	639
MspI	CCGG	3 cut(s)	43, 239, 261
MspR9I	CCNGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	91
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	5 cut(s)	28, 51, 59, 100, 626
NlaIII	CATG	4 cut(s)	116, 160, 221, 250
NlaIV	GGNNCC	2 cut(s)	53, 686
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	161, 371
PkrI	GCNGC	5 cut(s)	90, 130, 181, 289, 612
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	53, 686
PspPI	GGNCC	2 cut(s)	236, 590
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	3 cut(s)	28, 51, 100
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	5 cut(s)	89, 129, 180, 288, 611
Sau3AI	GATC	5 cut(s)	28, 51, 59, 100, 626
Sau96I	GGNCC	2 cut(s)	236, 590
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	7 cut(s)	198, 229, 475, 568, 592, 648, 703
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	285, 561
SinI	GGWCC	2 cut(s)	236, 590
Sse9I	AATT	5 cut(s)	169, 303, 343, 519, 595
SsiI	CCGC	5 cut(s)	63, 69, 89, 129, 180
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	228, 498
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	82, 571
TasI	AATT	5 cut(s)	169, 303, 343, 519, 595
TauI	GCSGC	3 cut(s)	91, 131, 182
TfiI	GAWTC	2 cut(s)	161, 371
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	2 cut(s)	85, 382
TseI	GCWGC	2 cut(s)	287, 610
TspDTI	ATGAA	3 cut(s)	263, 336, 542
TspRI	CASTG	2 cut(s)	85, 382
VpaK11BI	GGWCC	2 cut(s)	236, 590
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	595
XspI	CTAG	2 cut(s)	228, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.