Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Forward (+)

58702198 .. 58703896

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG387900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAAGCACCTAGGGTGGGTACACTGCCAAAGTATGGTTTCAGCTTTAAGTGTGATGAAAGAGCTGAGAAAAGAAGAGAGTTCTACACCAAACTTGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATTAAGATGCTCAGGAAGAAGCTGACTTTTAAAGCAACTCCAATGCCAAGCTTTTATCAGGAGCCTCCGCCTCCTAAGGTGGAGCTAAAGAAGTTACCAACAACAAGAGCCAAGTCTCCCAAGCTCGGCCGCAGGAAGAGCTTACCTCCAGCAGATTCTGGAGGAAACAGTAATACCAAGAGTCAATCTGGCAGGCTTAGTCTGGGTGAGAAACTTCCTCAAAACTCTGCCAAAGGACCTTCTCCTGTGCATCCAAAGAAGCCACAAAGAAAGTCTCTTCCTAGACTTCCATCTGAGAAGACCACTCTATCTAATGTGAAGAGTGTGCGGAAGGTTGCTTCAAAGGCAACAAACGAGGAAAAGGCTGCCGCGTTGCCCAATGCAACAAGTGAAGCTGGACCTCACACCCAAGAGCAGGAGGCAGTTCCCAGAGCTGAGATAACTGAACCCTACAGCCAAGAGCCGGAAGCAGTTCCCAGGGCTGCAATAAGTGAGGAGCAGTCCCATTCAGATGATGAGACAGTTAATGAAGAGGAACATCATCCCACCTTGGTTCAAGAGCCTATAGCGCTGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

250

Amino Acids

27.84

Weight (kDa)

9.49

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	14 - 84	1.6e-27	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccII	CGCG	1 cut(s)	542
AciI	CCGC	4 cut(s)	239, 301, 499, 540
AcoI	YGGCCR	1 cut(s)	298
AfaI	GTAC	1 cut(s)	22
AfeI	AGCGCT	1 cut(s)	741
AfiI	CCNNNNNNNGG	5 cut(s)	17, 35, 296, 586, 634
AgsI	TTSAA	2 cut(s)	513, 728
AjnI	CCWGG	1 cut(s)	647
Alw26I	GTCTC	3 cut(s)	291, 450, 683
AlwNI	CAGNNNCTG	1 cut(s)	329
Aor51HI	AGCGCT	1 cut(s)	741
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	536, 653
Asp700I	GAANNNNTTC	1 cut(s)	642
AspA2I	CCTAGG	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	407, 569
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	407, 569
AvrII	CCTAGG	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	523, 640
BccI	CCATC	2 cut(s)	115, 469
BciT130I	CCWGG	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	291, 450, 683
BfaI	CTAG	3 cut(s)	12, 161, 453
BfmI	CTRYAG	2 cut(s)	622, 735
BfoI	RGCGCY	1 cut(s)	743
BisI	GCNGC	4 cut(s)	301, 537, 540, 654
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	4 cut(s)	302, 538, 541, 655
Bme1390I	CCNGG	1 cut(s)	649
Bme18I	GGWCC	2 cut(s)	407, 569
BmgT120I	GGNCC	2 cut(s)	407, 569
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	2 cut(s)	168, 430
BpiI	GAAGAC	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	2 cut(s)	303, 351
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	11, 647, 648, 720
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 35, 296, 586, 634
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	649
BseDI	CCNNGG	4 cut(s)	11, 647, 648, 720
BseGI	GGATG	2 cut(s)	421, 712
BseLI	CCNNNNNNNGG	5 cut(s)	17, 35, 296, 586, 634
BseMII	CTCAG	5 cut(s)	57, 159, 196, 456, 597
BseRI	GAGGAG	1 cut(s)	680
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	523, 640
Bsh1236I	CGCG	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	635
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	5 cut(s)	17, 35, 296, 586, 634
BsmAI	GTCTC	3 cut(s)	291, 450, 683
BsmFI	GGGAC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	300
BspACI	CCGC	4 cut(s)	239, 301, 499, 540
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	5 cut(s)	58, 160, 195, 457, 598
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	11, 647, 648, 720
BssT1I	CCWWGG	2 cut(s)	11, 720
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	2 cut(s)	341, 694
Bst6I	CTCTTC	5 cut(s)	70, 302, 453, 485, 696
BstC8I	GCNNGC	2 cut(s)	141, 365
BstDEI	CTNAG	8 cut(s)	66, 150, 168, 182, 246, 368, 465, 606
BstF5I	GGATG	2 cut(s)	421, 712
BstFNI	CGCG	1 cut(s)	542
BstH2I	RGCGCY	1 cut(s)	743
BstHHI	GCGC	1 cut(s)	742
BstMAI	GTCTC	3 cut(s)	291, 450, 683
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 515, 739
BstNI	CCWGG	1 cut(s)	649
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	2 cut(s)	622, 735
BstUI	CGCG	1 cut(s)	542
BstV1I	GCAGC	2 cut(s)	523, 640
BstV2I	GAAGAC	1 cut(s)	476
BstZI	CGGCCG	1 cut(s)	298
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	421, 712
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	141, 365
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	407, 569
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	1 cut(s)	110
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	8 cut(s)	66, 150, 168, 182, 246, 368, 465, 606
DraI	TTTAAA	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	5 cut(s)	70, 302, 453, 485, 696
EarI	CTCTTC	5 cut(s)	70, 302, 453, 485, 696
EciI	GGCGGA	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	11, 720
Eco47I	GGWCC	2 cut(s)	407, 569
Eco47III	AGCGCT	1 cut(s)	741
Eco52I	CGGCCG	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	647
EcoT14I	CCWWGG	2 cut(s)	11, 720
ErhI	CCWWGG	2 cut(s)	11, 720
FaeI	CATG	1 cut(s)	113
FaiI	YATR	3 cut(s)	36, 111, 737
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	301, 537, 540, 654
FokI	GGATG	2 cut(s)	408, 699
Fsp4HI	GCNGC	4 cut(s)	301, 537, 540, 654
FspBI	CTAG	3 cut(s)	12, 161, 453
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	4 cut(s)	301, 537, 540, 654
GsuI	CTGGAG	2 cut(s)	303, 351
HaeII	RGCGCY	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	635
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	2 cut(s)	326, 352
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	466, 682
Hpy188III	TCNNGA	5 cut(s)	161, 184, 230, 330, 728
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	420, 496
HpyCH4III	ACNGT	2 cut(s)	341, 694
HpyCH4V	TGCA	5 cut(s)	113, 139, 421, 554, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 515, 739
HpyF3I	CTNAG	8 cut(s)	66, 150, 168, 182, 246, 368, 465, 606
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	740
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	3 cut(s)	232, 253, 667
Lsp1109I	GCAGC	2 cut(s)	523, 640
LweI	GCATC	2 cut(s)	168, 430
MaeI	CTAG	3 cut(s)	12, 161, 453
MaeIII	GTNAC	1 cut(s)	264
MboII	GAAGA	8 cut(s)	87, 139, 199, 319, 440, 481, 502, 713
MluCI	AATT	2 cut(s)	133, 748
MlyI	GAGTC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	4 cut(s)	48, 174, 201, 696
MslI	CAYNNNNRTG	1 cut(s)	681
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	649
MvaI	CCWGG	1 cut(s)	649
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	309, 515, 739
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	276
NspI	RCATGY	1 cut(s)	113
PasI	CCCWGGG	1 cut(s)	648
PciSI	GCTCTTC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	302, 538, 541, 655
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	407, 569
PspPPI	RGGWCCY	1 cut(s)	407
PstNI	CAGNNNCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	681
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	48, 174, 201, 696
SatI	GCNGC	4 cut(s)	301, 537, 540, 654
Sau96I	GGNCC	2 cut(s)	407, 569
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	649
SfaNI	GCATC	2 cut(s)	168, 430
SfcI	CTRYAG	2 cut(s)	622, 735
SinI	GGWCC	2 cut(s)	407, 569
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	133, 748
SsiI	CCGC	4 cut(s)	239, 301, 499, 540
SspMI	CTAG	3 cut(s)	12, 161, 453
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	2 cut(s)	11, 720
TaaI	ACNGT	2 cut(s)	341, 694
TasI	AATT	2 cut(s)	133, 748
TauI	GCSGC	2 cut(s)	303, 542
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	4 cut(s)	48, 174, 201, 696
Tru9I	TTAA	4 cut(s)	48, 174, 201, 696
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	536, 653
TspDTI	ATGAA	3 cut(s)	17, 72, 714
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	407, 569
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	3 cut(s)	12, 161, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.