Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Reverse (-)

40152548 .. 40157372

Gene Structure 4825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G480800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGATTCGGATAATTTGGTAGCCACCTATGGGCTTGAGGTGGCTCATCAAAATGGTGTTCATGGACAACCTGGTGTTGTTTCAGACAACATAAATGGGACTGTCAGCGAAACTACTACGACCGAGACTGCAGCTCCAAATGGGAAAATTGAAAATGTCGTCAAGTTGGATGATGGTGTGACTAATAACTCATCTACTGGGGAAGCCAAAGAGGAATCCACTGTCAACCCTGAAAGAAATGGTTTGACTATCGCTTTGACTATTGCTAAGGAAGGGGAAGTGAAAGGCTCTCTTCATTCAAAGCAAACCAAAGTGCAGAAAGGTCAAGGTAAGAGCAAGAATGAGAAGCCTTCTGGTCCCAAGAATGTCTCGCCAGTTTGGATGAAGAAAAGTAAAGATGGAAATGATGGAGAGGTGACAGCTGCTGTCTCAAATGGTTCAGCTGCTACAACTTCACGCCCAAAACAGCCTAACAAGACTAGATCATTTAATGGGCGACAGGTTCAGTCATCCAATCAGCAACTTGAGAAATCCGATACAGAATTGTCTGAAGGCACCGTGGAGAAGACAAAGCTGAAGCCTTTGAAAAAAGACTCCCTTAATAAGGCTGAAGGAGAATCACAATCCTCTTTAAGTCCTACAGAAGGAGACATGAAACCACCTAGGGTCAGTACACTTCCGAACTACGGTTTCAGTTTTAGGTGTGATGAACGAGCTGAGAAAAGGAGAGAGTTCTACACTAAACTCGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATTAGGATGCTCAGGAAGAAACTGACTTTTAAAGCAACTCCAATGCCAAGCTTCTATCAGGAGCCTCCACCTCCTAAGGTGGAGCTAAAGAAGATACCAACAACAAGGGCCAAGTCTCCCAAGCTCGGCCGTAGAAAGAGCTTACCTCCCGCAGTTTCTGAAGGAAACAGTAATACCAATGATCGATCAAGCAGGCTTAGTCTGGATGAGAAAGTTCCTCAGAACTCTGCTAAAGGGCCTTCTCCTGTGCATCCAAAGAAGCCACAACGGAAGTCTCTTCCTAGACTGCCGTCTGAAAAGACCACTTTACCTAATGCGGGGAATGAGCGAAAAATTACTTCTAAGGCAACAAATGAGGGAAAAAACAACTTAATTGATGCAATGAATGAGGAGAATGCCACCTTGCCCAATGCAAAAAGTGAAGCTGGATCTGACACCCAAGAGCAGGAGGCAGTTCCGAAGGCTGAGACAAGTGAAGCACAGCCCCATACAGATGACGAGACAGTGGTTGAAGAGCAACATGATCCCATCTATGTTCAAGAAGAACCTATAGCCTTGGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

463

Amino Acids

50.48

Weight (kDa)

8.7

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	2 cut(s)	972, 1139
AclWI	GGATC	2 cut(s)	1258, 1340
AcoI	YGGCCR	1 cut(s)	949
AcuI	CTGAAG	4 cut(s)	570, 596, 630, 1002
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	7 cut(s)	30, 604, 644, 686, 947, 1139, 1267
AgsI	TTSAA	5 cut(s)	152, 300, 586, 1334, 1361
AjnI	CCWGG	1 cut(s)	70
Alw26I	GTCTC	8 cut(s)	119, 373, 433, 642, 942, 1101, 1283, 1316
AlwI	GGATC	2 cut(s)	1258, 1340
AlwNI	CAGNNNCTG	2 cut(s)	425, 980
Ama87I	CYCGRG	1 cut(s)	746
AoxI	GGCC	3 cut(s)	930, 949, 1058
ApeKI	GCWGC	3 cut(s)	131, 422, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspA2I	CCTAGG	1 cut(s)	662
AspS9I	GGNCC	3 cut(s)	356, 930, 1058
AsuHPI	GGTGA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	897
BanI	GGYRCC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	3 cut(s)	143, 409, 430
BccI	CCATC	5 cut(s)	167, 392, 401, 766, 1358
BceAI	ACGGC	2 cut(s)	936, 1096
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	8 cut(s)	119, 373, 433, 642, 942, 1101, 1283, 1316
BfaI	CTAG	4 cut(s)	480, 663, 812, 1104
BfmI	CTRYAG	3 cut(s)	129, 639, 1371
BisI	GCNGC	3 cut(s)	132, 423, 444
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	3 cut(s)	133, 424, 445
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	746
BmgT120I	GGNCC	3 cut(s)	356, 930, 1058
BmiI	GGNNCC	3 cut(s)	358, 556, 885
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	3 cut(s)	819, 1081, 1189
BmuI	ACTGGG	1 cut(s)	207
BoxI	GACNNNNGTC	1 cut(s)	1111
BpiI	GAAGAC	1 cut(s)	572
BplI	GAGNNNNNCTC	2 cut(s)	952, 984
Bpu10I	CCTNAGC	2 cut(s)	267, 833
BpuEI	CTTGAG	2 cut(s)	56, 545
Bsa29I	ATCGAT	1 cut(s)	1006
BsaJI	CCNNGG	3 cut(s)	558, 662, 1377
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	7 cut(s)	30, 604, 644, 686, 947, 1139, 1267
Bse1I	ACTGG	2 cut(s)	202, 374
Bse21I	CCTNAGG	1 cut(s)	897
Bse3DI	GCAATG	1 cut(s)	1209
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	1006
BseDI	CCNNGG	3 cut(s)	558, 662, 1377
BseGI	GGATG	6 cut(s)	175, 387, 509, 834, 1033, 1072
BseLI	CCNNNNNNNGG	7 cut(s)	30, 604, 644, 686, 947, 1139, 1267
BseMI	GCAATG	1 cut(s)	1209
BseMII	CTCAG	5 cut(s)	708, 810, 847, 1055, 1278
BseNI	ACTGG	2 cut(s)	202, 374
BseRI	GAGGAG	1 cut(s)	1226
BseX3I	CGGCCG	1 cut(s)	949
BseXI	GCAGC	3 cut(s)	143, 409, 430
BsgI	GTGCAG	1 cut(s)	335
Bsh1285I	CGRYCG	2 cut(s)	123, 952
BshFI	GGCC	3 cut(s)	932, 951, 1060
BshNI	GGYRCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	1006
BsiEI	CGRYCG	2 cut(s)	123, 952
BsiHKCI	CYCGRG	1 cut(s)	746
BslFI	GGGAC	2 cut(s)	112, 342
BslI	CCNNNNNNNGG	7 cut(s)	30, 604, 644, 686, 947, 1139, 1267
BsmAI	GTCTC	8 cut(s)	119, 373, 433, 642, 942, 1101, 1283, 1316
BsmFI	GGGAC	2 cut(s)	112, 342
BsmI	GAATGC	1 cut(s)	1222
BsnI	GGCC	3 cut(s)	932, 951, 1060
BsoBI	CYCGRG	1 cut(s)	746
Bsp143I	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
BspACI	CCGC	2 cut(s)	972, 1139
BspANI	GGCC	3 cut(s)	932, 951, 1060
BspCNI	CTCAG	5 cut(s)	709, 811, 846, 1054, 1279
BspDI	ATCGAT	1 cut(s)	1006
BspLI	GGNNCC	3 cut(s)	358, 556, 885
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	1258, 1340
BspQI	GCTCTTC	1 cut(s)	1329
BspT107I	GGYRCC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	1209
BsrI	ACTGG	2 cut(s)	202, 374
BssECI	CCNNGG	3 cut(s)	558, 662, 1377
BssMI	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
BssT1I	CCWWGG	2 cut(s)	662, 1377
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	6 cut(s)	103, 223, 559, 689, 992, 1327
Bst6I	CTCTTC	3 cut(s)	297, 1104, 1329
BstC8I	GCNNGC	2 cut(s)	792, 1016
BstDSI	CCRYGG	1 cut(s)	558
BstENI	CCTNNNNNAGG	2 cut(s)	602, 642
BstF5I	GGATG	6 cut(s)	175, 387, 509, 834, 1033, 1072
BstKTI	GATC	5 cut(s)	485, 1006, 1010, 1253, 1348
BstMAI	GTCTC	8 cut(s)	119, 373, 433, 642, 942, 1101, 1283, 1316
BstMBI	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
BstMCI	CGRYCG	2 cut(s)	123, 952
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	764
BstPAI	GACNNNNGTC	1 cut(s)	1111
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	3 cut(s)	129, 639, 1371
BstV1I	GCAGC	3 cut(s)	143, 409, 430
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	1250
BstYI	RGATCY	1 cut(s)	1250
BstZI	CGGCCG	1 cut(s)	949
Bsu15I	ATCGAT	1 cut(s)	1006
Bsu36I	CCTNAGG	1 cut(s)	897
BsuRI	GGCC	3 cut(s)	932, 951, 1060
BsuTUI	ATCGAT	1 cut(s)	1006
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	6 cut(s)	175, 387, 509, 834, 1033, 1072
BtsIMutI	CAGTG	2 cut(s)	219, 1332
Cac8I	GCNNGC	2 cut(s)	792, 1016
CaiI	CAGNNNCTG	2 cut(s)	425, 980
Cfr13I	GGNCC	3 cut(s)	356, 930, 1058
ClaI	ATCGAT	1 cut(s)	1006
CsiI	ACCWGGT	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	4 cut(s)	62, 652, 761, 1343
CviQI	GTAC	1 cut(s)	672
DpnI	GATC	5 cut(s)	484, 1005, 1009, 1252, 1347
DpnII	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
DraI	TTTAAA	1 cut(s)	853
EaeI	YGGCCR	1 cut(s)	949
EagI	CGGCCG	1 cut(s)	949
Eam1104I	CTCTTC	3 cut(s)	297, 1104, 1329
EarI	CTCTTC	3 cut(s)	297, 1104, 1329
EclXI	CGGCCG	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	662, 1377
Eco47I	GGWCC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	949
Eco57I	CTGAAG	4 cut(s)	570, 596, 630, 1002
Eco81I	CCTNAGG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	746
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 642
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	662, 1377
ErhI	CCWWGG	2 cut(s)	662, 1377
FaeI	CATG	4 cut(s)	65, 655, 764, 1346
FaiI	YATR	9 cut(s)	30, 63, 92, 653, 762, 1311, 1344, 1356, 1373
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 582, 614
FaqI	GGGAC	2 cut(s)	112, 342
FatI	CATG	4 cut(s)	61, 651, 760, 1342
FauI	CCCGC	2 cut(s)	979, 1132
Fnu4HI	GCNGC	3 cut(s)	132, 423, 444
FokI	GGATG	6 cut(s)	182, 394, 496, 841, 1040, 1059
Fsp4HI	GCNGC	3 cut(s)	132, 423, 444
FspBI	CTAG	4 cut(s)	480, 663, 812, 1104
GluI	GCNGC	3 cut(s)	132, 423, 444
HaeIII	GGCC	3 cut(s)	932, 951, 1060
Hin1II	CATG	4 cut(s)	65, 655, 764, 1346
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	871
HinfI	GANTC	4 cut(s)	5, 215, 593, 617
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	226, 674
Hpy188III	TCNNGA	5 cut(s)	812, 835, 881, 1025, 1361
Hpy8I	GTNNAC	2 cut(s)	226, 674
HpyAV	CCTTC	8 cut(s)	266, 360, 545, 605, 638, 977, 1071, 1276
HpyCH4III	ACNGT	6 cut(s)	103, 223, 559, 689, 992, 1327
HpyCH4V	TGCA	7 cut(s)	131, 316, 764, 790, 1072, 1202, 1235
Hsp92II	CATG	4 cut(s)	65, 655, 764, 1346
Kzo9I	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
LguI	GCTCTTC	1 cut(s)	1329
LmnI	GCTCC	4 cut(s)	139, 883, 904, 1381
Lsp1109I	GCAGC	3 cut(s)	143, 409, 430
LweI	GCATC	3 cut(s)	819, 1081, 1189
MabI	ACCWGGT	1 cut(s)	70
MaeI	CTAG	4 cut(s)	480, 663, 812, 1104
MaeIII	GTNAC	2 cut(s)	178, 415
MalI	GATC	5 cut(s)	484, 1005, 1009, 1252, 1347
MboI	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
MboII	GAAGA	9 cut(s)	284, 397, 577, 790, 850, 925, 1091, 1346, 1376
MflI	RGATCY	1 cut(s)	1250
MluCI	AATT	6 cut(s)	13, 147, 542, 784, 1155, 1194
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	147
MseI	TTAA	5 cut(s)	489, 600, 632, 852, 1193
MslI	CAYNNNNRTG	2 cut(s)	51, 1314
MspA1I	CMGCKG	2 cut(s)	422, 443
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	1222
MvaI	CCWGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
NlaIII	CATG	4 cut(s)	65, 655, 764, 1346
NlaIV	GGNNCC	3 cut(s)	358, 556, 885
NmeAIII	GCCGAG	1 cut(s)	927
NmuCI	GTSAC	2 cut(s)	178, 415
NspI	RCATGY	1 cut(s)	764
PaeR7I	CTCGAG	1 cut(s)	746
PciSI	GCTCTTC	1 cut(s)	1329
PctI	GAATGC	1 cut(s)	1222
PfeI	GAWTC	3 cut(s)	5, 215, 617
PkrI	GCNGC	3 cut(s)	133, 424, 445
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
PshAI	GACNNNNGTC	1 cut(s)	1111
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	358, 556, 885
PspPI	GGNCC	3 cut(s)	356, 930, 1058
PspXI	VCTCGAGB	1 cut(s)	746
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	2 cut(s)	425, 980
PsuI	RGATCY	1 cut(s)	1250
PvuII	CAGCTG	2 cut(s)	422, 443
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	2 cut(s)	51, 1314
SapI	GCTCTTC	1 cut(s)	1329
SaqAI	TTAA	5 cut(s)	489, 600, 632, 852, 1193
SatI	GCNGC	3 cut(s)	132, 423, 444
Sau3AI	GATC	5 cut(s)	482, 1003, 1007, 1250, 1345
Sau96I	GGNCC	3 cut(s)	356, 930, 1058
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	72
SexAI	ACCWGGT	1 cut(s)	70
SfaNI	GCATC	3 cut(s)	819, 1081, 1189
SfcI	CTRYAG	3 cut(s)	129, 639, 1371
Sfr274I	CTCGAG	1 cut(s)	746
SinI	GGWCC	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	51, 1314
SmlI	CTYRAG	3 cut(s)	35, 524, 746
SmoI	CTYRAG	3 cut(s)	35, 524, 746
Sse9I	AATT	6 cut(s)	13, 147, 542, 784, 1155, 1194
SsiI	CCGC	2 cut(s)	972, 1139
SspMI	CTAG	4 cut(s)	480, 663, 812, 1104
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	662, 1377
TaaI	ACNGT	6 cut(s)	103, 223, 559, 689, 992, 1327
TaqI	TCGA	2 cut(s)	747, 1006
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	6 cut(s)	13, 147, 542, 784, 1155, 1194
TatI	WGTACW	1 cut(s)	671
TfiI	GAWTC	3 cut(s)	5, 215, 617
Tru1I	TTAA	5 cut(s)	489, 600, 632, 852, 1193
Tru9I	TTAA	5 cut(s)	489, 600, 632, 852, 1193
TscAI	CASTG	2 cut(s)	226, 1332
TseFI	GTSAC	2 cut(s)	178, 415
TseI	GCWGC	3 cut(s)	131, 422, 443
Tsp45I	GTSAC	2 cut(s)	178, 415
TspDTI	ATGAA	6 cut(s)	50, 284, 398, 668, 723, 1220
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	2 cut(s)	226, 1332
VpaK11BI	GGWCC	1 cut(s)	356
XagI	CCTNNNNNAGG	2 cut(s)	602, 642
XbaI	TCTAGA	1 cut(s)	811
XceI	RCATGY	1 cut(s)	764
XhoI	CTCGAG	1 cut(s)	746
XmaJI	CCTAGG	1 cut(s)	662
XspI	CTAG	4 cut(s)	480, 663, 812, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.