Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Forward (+)

15608905 .. 15612339

Gene Structure 3435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32330.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGACCCTGAGAGTATCATGGCTGCTGATGGGACTGATTCTGCTCCTGCAAATGGTGGTTTAGCAATGGAAAATGTATGTGTTAAAGAAAATGGGGCTGTTTCTGTCGAAACCGTGGACACTACTTCAGAAAGTCAGAATGAGAATTCGGCAAACAGTTCCACTTTGGATACAATTGAACACGTCAAGGAGGCAGCTGAGGGCACACAAGTTGAACATGTAGATGATTCAAAGTGTATGAAAGGCGAAAAAGCTCAACGGAAGCCAAGGCATGAGAAACTATCAGGTGGTAAGAATAATTCATCGGTTCACATCAAAAAGAGCAAAGAGGGCAAAAGTGCAGATGCTAAAGTGGCAGCATCAAATGGTTCTGTTGCTCCTAATGTACAGACAACAAATCCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGGGGAGAAGGTGAAACCAAAGTCTCAAAAGAAACAAGCCCATGAGACATCTGAAGATGATACTCAGTCTTCTAATAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGTTCTATGTTAAGCTTGAGGAGAAGACTCATGCAAAAGAAGAGGAAATTAATAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAACAGAGTTAAAGAAGATACCACCAACGAGACCAAAATCTCCAAAACTCGGGCGAAAGAAGACTGCTTCTGGAGCAGATTCTGAAGAAACTCAAACCCCTCGCCTTGGTAGGCTAAGCCTAGATGAGAGAGCTTCTAAAGATAACCCAACTGCAAAGGGAATTATGCCAACAGTTGATCTGAAGAAGCAACCTGTGCGCAAGTCACTTCCAAGATTGCCATCTCAGAAAACAGTTCTCCCCGATGGAAAACCCGCCCCAGCAAAAGCTGCCATAATCCCAGCAAAGGTAAGACCTGAGAAAAAGAAACTTGAAAAAGATGCAGAAACCGTAAACCAGACTTCACATCCCACAGAAGAGGAAGCACAAGTGACAGTATCATCCAATGCTGATGTAGAAGATTCACATGAGACTGTATCTCCAAGGATGAATGAAGACAGAGCCGACAAGTCCATTGAGGTATCTGAAGCGGTTGCTGTTGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

437

Amino Acids

47.54

Weight (kDa)

8.59

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	207 - 282	9.7e-26	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	478
Acc16I	TGCGCA	1 cut(s)	1025
Acc36I	ACCTGC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	614
AciI	CCGC	3 cut(s)	821, 1080, 1295
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	5 cut(s)	111, 558, 930, 1028, 1311
AfaI	GTAC	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	481
AfiI	CCNNNNNNNGG	5 cut(s)	53, 614, 875, 932, 1111
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	2 cut(s)	181, 217
AgsI	TTSAA	8 cut(s)	179, 215, 231, 421, 628, 775, 781, 1139
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	8 cut(s)	197, 254, 673, 746, 751, 801, 959, 1094
AluI	AGCT	8 cut(s)	197, 254, 673, 746, 751, 801, 959, 1094
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	4 cut(s)	513, 524, 850, 1229
Alw44I	GTGCAC	1 cut(s)	600
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	875
Aor51HI	AGCGCT	1 cut(s)	481
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	4 cut(s)	23, 194, 356, 1094
ApoI	RAATTY	1 cut(s)	145
AseI	ATTAAT	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	482, 1026
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	206, 604
BbsI	GAAGAC	4 cut(s)	546, 689, 893, 1266
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	2 cut(s)	198, 816
BbvI	GCAGC	4 cut(s)	10, 206, 368, 1081
BccI	CCATC	5 cut(s)	23, 479, 572, 1054, 1064
BciVI	GTATCC	1 cut(s)	163
BcoDI	GTCTC	4 cut(s)	513, 524, 850, 1229
BfaI	CTAG	2 cut(s)	798, 947
BfoI	RGCGCY	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	5 cut(s)	24, 195, 357, 821, 1095
BlpI	GCTNAGC	2 cut(s)	747, 941
BlsI	GCNGC	5 cut(s)	25, 196, 358, 822, 1096
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	875
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	334, 368, 747, 1135
BpiI	GAAGAC	4 cut(s)	546, 689, 893, 1266
BpmI	CTGGAG	1 cut(s)	918
Bpu10I	CCTNAGC	4 cut(s)	198, 752, 761, 816
Bpu1102I	GCTNAGC	2 cut(s)	747, 941
BpuEI	CTTGAG	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	1045
BsaI	GGTCTC	1 cut(s)	850
BsaJI	CCNNGG	5 cut(s)	114, 266, 729, 931, 1247
BsaXI	ACNNNNNCTCC	2 cut(s)	1228, 1258
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 614, 875, 932, 1111
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	1045
BseDI	CCNNGG	5 cut(s)	114, 266, 729, 931, 1247
BseGI	GGATG	4 cut(s)	762, 1171, 1205, 1257
BseJI	GATNNNNATC	1 cut(s)	1045
BseLI	CCNNNNNNNGG	5 cut(s)	53, 614, 875, 932, 1111
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	6 cut(s)	189, 563, 738, 830, 1064, 1113
BseRI	GAGGAG	1 cut(s)	692
BseSI	GKGCMC	2 cut(s)	206, 604
BseXI	GCAGC	4 cut(s)	10, 206, 368, 1081
BseYI	CCCAGC	2 cut(s)	1084, 1105
BsgI	GTGCAG	2 cut(s)	360, 450
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	5 cut(s)	53, 614, 875, 932, 1111
BsmAI	GTCTC	4 cut(s)	513, 524, 850, 1229
BsmFI	GGGAC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	850
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	206, 604
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	1003
Bsp1720I	GCTNAGC	2 cut(s)	747, 941
BspACI	CCGC	3 cut(s)	821, 1080, 1295
BspCNI	CTCAG	6 cut(s)	190, 562, 739, 829, 1063, 1114
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	850
BsrDI	GCAATG	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	385
BssECI	CCNNGG	5 cut(s)	114, 266, 729, 931, 1247
BssMI	GATC	1 cut(s)	1003
BssT1I	CCWWGG	4 cut(s)	266, 729, 931, 1247
Bst4CI	ACNGT	7 cut(s)	115, 158, 1000, 1060, 1156, 1201, 1240
Bst6I	CTCTTC	3 cut(s)	693, 761, 1176
BstAFI	CTTAAG	1 cut(s)	404
BstAPI	GCANNNNNTGC	2 cut(s)	1021, 1094
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	716, 720
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	4 cut(s)	762, 1171, 1205, 1257
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	2 cut(s)	482, 1026
BstKTI	GATC	1 cut(s)	1006
BstMAI	GTCTC	4 cut(s)	513, 524, 850, 1229
BstMBI	GATC	1 cut(s)	1003
BstMWI	GCNNNNNNNGC	8 cut(s)	330, 353, 454, 479, 757, 899, 1021, 1094
BstNSI	RCATGY	2 cut(s)	221, 718
BstSLI	GKGCMC	2 cut(s)	206, 604
BstV1I	GCAGC	4 cut(s)	10, 206, 368, 1081
BstV2I	GAAGAC	4 cut(s)	546, 689, 893, 1266
BsuI	GTATCC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	762, 1171, 1205, 1257
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	716, 720
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	2 cut(s)	482, 1026
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	8 cut(s)	19, 218, 272, 458, 527, 689, 715, 1232
CviQI	GTAC	1 cut(s)	386
DpnI	GATC	1 cut(s)	1005
DpnII	GATC	1 cut(s)	1003
Eam1104I	CTCTTC	3 cut(s)	693, 761, 1176
EarI	CTCTTC	3 cut(s)	693, 761, 1176
Eco130I	CCWWGG	4 cut(s)	266, 729, 931, 1247
Eco31I	GGTCTC	1 cut(s)	850
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	481
Eco57I	CTGAAG	5 cut(s)	111, 558, 930, 1028, 1311
Eco88I	CYCGRG	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	145
EcoT14I	CCWWGG	4 cut(s)	266, 729, 931, 1247
ErhI	CCWWGG	4 cut(s)	266, 729, 931, 1247
FaeI	CATG	8 cut(s)	22, 221, 275, 461, 530, 692, 718, 1235
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	8 cut(s)	18, 217, 271, 457, 526, 688, 714, 1231
FauI	CCCGC	1 cut(s)	1087
Fnu4HI	GCNGC	5 cut(s)	24, 195, 357, 821, 1095
FokI	GGATG	4 cut(s)	769, 1158, 1192, 1264
Fsp4HI	GCNGC	5 cut(s)	24, 195, 357, 821, 1095
FspBI	CTAG	2 cut(s)	798, 947
FspI	TGCGCA	1 cut(s)	1025
GlaI	GCGC	2 cut(s)	481, 1025
GluI	GCNGC	5 cut(s)	24, 195, 357, 821, 1095
GsaI	CCCAGC	2 cut(s)	1088, 1109
GsuI	CTGGAG	1 cut(s)	918
HaeII	RGCGCY	1 cut(s)	483
HhaI	GCGC	2 cut(s)	482, 1026
Hin1II	CATG	8 cut(s)	22, 221, 275, 461, 530, 692, 718, 1235
Hin6I	GCGC	2 cut(s)	480, 1024
HinP1I	GCGC	2 cut(s)	480, 1024
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	7 cut(s)	38, 227, 461, 618, 685, 905, 1226
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	4 cut(s)	118, 310, 602, 1159
Hpy188I	TCNGA	8 cut(s)	130, 138, 538, 567, 910, 1008, 1053, 1291
Hpy188III	TCNNGA	2 cut(s)	809, 897
Hpy8I	GTNNAC	4 cut(s)	118, 310, 602, 1159
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	7 cut(s)	115, 158, 1000, 1060, 1156, 1201, 1240
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	8 cut(s)	50, 341, 467, 602, 692, 718, 980, 1148
HpyF10VI	GCNNNNNNNGC	8 cut(s)	330, 353, 454, 479, 757, 899, 1021, 1094
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	8 cut(s)	22, 221, 275, 461, 530, 692, 718, 1235
HspAI	GCGC	2 cut(s)	480, 1024
Kzo9I	GATC	1 cut(s)	1003
LmnI	GCTCC	3 cut(s)	49, 382, 899
Lsp1109I	GCAGC	4 cut(s)	10, 206, 368, 1081
LweI	GCATC	4 cut(s)	334, 368, 747, 1135
MaeI	CTAG	2 cut(s)	798, 947
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	4 cut(s)	439, 632, 1029, 1195
MalI	GATC	1 cut(s)	1005
MboI	GATC	1 cut(s)	1003
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	2 cut(s)	206, 604
MluCI	AATT	6 cut(s)	145, 174, 298, 610, 705, 987
MlyI	GAGTC	2 cut(s)	455, 679
MseI	TTAA	6 cut(s)	84, 405, 669, 708, 836, 1312
MslI	CAYNNNNRTG	2 cut(s)	222, 791
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	8 cut(s)	330, 353, 454, 479, 757, 899, 1021, 1094
NdeII	GATC	1 cut(s)	1003
NlaIII	CATG	8 cut(s)	22, 221, 275, 461, 530, 692, 718, 1235
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	4 cut(s)	439, 632, 1029, 1195
NsbI	TGCGCA	1 cut(s)	1025
NspI	RCATGY	2 cut(s)	221, 718
PaeI	GCATGC	1 cut(s)	718
PaqCI	CACCTGC	1 cut(s)	478
PciI	ACATGT	1 cut(s)	217
PfeI	GAWTC	5 cut(s)	38, 227, 618, 905, 1226
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	5 cut(s)	25, 196, 358, 822, 1096
PleI	GAGTC	2 cut(s)	455, 679
PpsI	GAGTC	2 cut(s)	455, 679
PscI	ACATGT	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	708
PspFI	CCCAGC	2 cut(s)	1084, 1105
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	2 cut(s)	222, 791
SaqAI	TTAA	6 cut(s)	84, 405, 669, 708, 836, 1312
SatI	GCNGC	5 cut(s)	24, 195, 357, 821, 1095
Sau3AI	GATC	1 cut(s)	1003
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	455, 679
SduI	GDGCHC	2 cut(s)	206, 604
SfaNI	GCATC	4 cut(s)	334, 368, 747, 1135
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	222, 791
SmlI	CTYRAG	2 cut(s)	404, 674
SmoI	CTYRAG	2 cut(s)	404, 674
SphI	GCATGC	1 cut(s)	718
Sse9I	AATT	6 cut(s)	145, 174, 298, 610, 705, 987
SsiI	CCGC	3 cut(s)	821, 1080, 1295
SspMI	CTAG	2 cut(s)	798, 947
StyI	CCWWGG	4 cut(s)	266, 729, 931, 1247
TaaI	ACNGT	7 cut(s)	115, 158, 1000, 1060, 1156, 1201, 1240
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	108
TasI	AATT	6 cut(s)	145, 174, 298, 610, 705, 987
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	5 cut(s)	38, 227, 618, 905, 1226
Tru1I	TTAA	6 cut(s)	84, 405, 669, 708, 836, 1312
Tru9I	TTAA	6 cut(s)	84, 405, 669, 708, 836, 1312
TseFI	GTSAC	4 cut(s)	439, 632, 1029, 1195
TseI	GCWGC	4 cut(s)	23, 194, 356, 1094
Tsp45I	GTSAC	4 cut(s)	439, 632, 1029, 1195
TspDTI	ATGAA	4 cut(s)	254, 291, 1268, 1272
TspGWI	ACGGA	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	614
Vha464I	CTTAAG	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	2 cut(s)	221, 718
XspI	CTAG	2 cut(s)	798, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.