FvH4_2g29090

Targeting protein for Xklp2 (TPX2)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22635958 .. 22641961
6004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29090.t2

Sequence Viewer

Length: 1410 bp
ATGGATTCGGACAATTCGGAAGCCGCCTATGGGCTTCAGGTCGCGCTTGAAAATGGTGATCATGGGCAACTTAATGTTGGTCCAGACGCAATTAATGGGAGTGCCAGTGAAACTGCTCTTACTGAGTCTGCTGCACTAAATGGGAAAATGGAAAATGTGGTGAACTCGGATGATGGTGTCTCTAACAACTCGTCTGCTGGAGAAGTGAAAGAGGAATCCAGAGTCAACTCGAGCAATGGTTTGAAAATTGCTAAGGAAAGGGGACCAAAAGTTTCTGTTCAGTCAAAGCAATTCAAAGTGCAGAAGGGTCAAGGTAAGAGTAAGATTGAGAAGCCACCTAGTCCCAAGATCGCCTTGCCAACTTCAATGAAGAAAAGCAAAGATGGAAATGATGCAGAGGCAACAGCTACTGTTTCCAATGATTTAGCTGCTCCAATTTCACGGGCCAAGCAGCCTAACAAGAGTAGATCATCGAATGGCCCGCAGGTTCAGTTATCCGATCAACCTAAACAATCTGAGGCACCATCAACTGAAGGCCTTGTGGAGAAGACAGATCTGAAGCCACTAATCAAAGGCTCTTATAAGGCTGATGGAGACTCACAATCTTCTTTAAGTCCCACAGAAGGAGATAAACCGCCTAGGGTGGGTACGTTGCCGAACTATGGTTTCAGCTTTAGGTGTGATGAAAGAGCTGAGAAAAGAAGAGAGTTCTACACCAAACTTGAGGAAAAGATACATGCAAAGGAGATGGAGAAGAATAATTTGCAAGCCAAGTCTAAGGAAACTCTAGAAGCTGAGATCAAGATGCTCAGGAAGAAGCTGACTTTTAAAGCAACTCCAATGCCAAGCTTTTATCAGGAGCCTCCACCTCCTAAGGTGGAGCTAAAGAAGTTACCAACAACAAGAGCCAAGTCTCCCAAGCTCGGCCGCAAGAAGAGCTTACCTGCAGCAGATTCTGAAGGAAACAGTACAACCAAGAGTCAATCTGGCAGGCTTAGTCTGGGTGAGAAAGTTCCTCAAAATTCTGCCAAAGGACCTTCTCCTGTGCTTCCAAAGAAGCCTCAAAGAAAGTCTCTTCCTAGATTGCCATCTGAGACCACTACTTTATCTGGTGTGAAGAATGTGAGAAAAGTTACTTCCAAGGCAATAAAGGAGGAAAAGAACAACTTGATCAATGCAATGAATGAAGAGGCTGCCACCTTGCCCAGTGCAGCAAGTGGAGCTGGACCTCACATCCAAGAGCAGGAGGTGGTTCCCAGAGCTGAGATAACTGAACCCTACACTGAAGAGCCAGAAACGGTTCCAAGGGCTGTGATAAGCGAGGAGCAGAGCCATTCAGATGATGACACAGTTAATGAAGAGGAACATCATCCCACCTTGGTTCAAGAGCCTATATCGCTGGCGAATTGA

Protein Analysis

470

Amino Acids

50.65

Weight (kDa)

8.69

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 223 - 293 3.7e-27 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
Acc36I ACCTGC 2 cut(s) 475, 952
AccB1I GGYRCC 1 cut(s) 520
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 24, 482, 635, 928
AcoI YGGCCR 1 cut(s) 925
AcsI RAATTY 1 cut(s) 1021
AcuI CTGAAG 5 cut(s) 20, 552, 578, 978, 1305
AfaI GTAC 2 cut(s) 649, 970
AfiI CCNNNNNNNGG 6 cut(s) 30, 623, 644, 662, 923, 1243
AgsI TTSAA 5 cut(s) 50, 244, 295, 366, 1385
Alw26I GTCTC 5 cut(s) 184, 588, 918, 1077, 1088
AlwNI CAGNNNCTG 2 cut(s) 410, 956
Ama87I CYCGRG 1 cut(s) 229
AoxI GGCC 4 cut(s) 444, 478, 535, 925
ApeKI GCWGC 6 cut(s) 131, 428, 451, 947, 1193, 1211
ApoI RAATTY 1 cut(s) 1021
AseI ATTAAT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 1299
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 6 cut(s) 80, 263, 444, 479, 1034, 1226
AsuHPI GGTGA 3 cut(s) 68, 172, 1016
AvaI CYCGRG 1 cut(s) 229
AvaII GGWCC 4 cut(s) 80, 263, 1034, 1226
AvrII CCTAGG 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 873
BanI GGYRCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 554
BbvI GCAGC 6 cut(s) 118, 415, 463, 959, 1180, 1223
BccI CCATC 6 cut(s) 167, 377, 532, 584, 742, 1096
BclI TGATCA 2 cut(s) 58, 1170
BcoDI GTCTC 5 cut(s) 184, 588, 918, 1077, 1088
BfaI CTAG 4 cut(s) 339, 639, 788, 1080
BfmI CTRYAG 1 cut(s) 945
BfuAI ACCTGC 2 cut(s) 475, 952
BglII AGATCT 1 cut(s) 553
BisI GCNGC 8 cut(s) 24, 132, 429, 452, 928, 948, 1194, 1212
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 8 cut(s) 25, 133, 430, 453, 929, 949, 1195, 1213
Bme18I GGWCC 4 cut(s) 80, 263, 1034, 1226
BmeT110I CYCGRG 1 cut(s) 229
BmgT120I GGNCC 6 cut(s) 80, 263, 444, 479, 1034, 1226
BmiI GGNNCC 5 cut(s) 264, 522, 861, 1254, 1302
BmrI ACTGGG 1 cut(s) 1200
BmsI GCATC 2 cut(s) 382, 795
BmuI ACTGGG 1 cut(s) 1200
BpiI GAAGAC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 2 cut(s) 252, 809
BpuEI CTTGAG 1 cut(s) 743
BsaBI GATNNNNATC 1 cut(s) 1087
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 4 cut(s) 638, 1140, 1304, 1377
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 6 cut(s) 30, 623, 644, 662, 923, 1243
Bse1I ACTGG 2 cut(s) 105, 1206
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 2 cut(s) 241, 1185
Bse8I GATNNNNATC 1 cut(s) 1087
BseDI CCNNGG 4 cut(s) 638, 1140, 1304, 1377
BseGI GGATG 3 cut(s) 175, 1233, 1369
BseJI GATNNNNATC 1 cut(s) 1087
BseLI CCNNNNNNNGG 6 cut(s) 30, 623, 644, 662, 923, 1243
BseMI GCAATG 2 cut(s) 241, 1185
BseMII CTCAG 7 cut(s) 114, 507, 684, 786, 823, 1083, 1254
BseNI ACTGG 2 cut(s) 105, 1206
BseRI GAGGAG 1 cut(s) 1337
BseX3I CGGCCG 1 cut(s) 925
BseXI GCAGC 6 cut(s) 118, 415, 463, 959, 1180, 1223
BsgI GTGCAG 3 cut(s) 117, 320, 1230
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 928
BshFI GGCC 4 cut(s) 446, 480, 537, 927
BshNI GGYRCC 1 cut(s) 520
BsiEI CGRYCG 1 cut(s) 928
BsiHKCI CYCGRG 1 cut(s) 229
BslFI GGGAC 3 cut(s) 276, 327, 600
BslI CCNNNNNNNGG 6 cut(s) 30, 623, 644, 662, 923, 1243
BsmAI GTCTC 5 cut(s) 184, 588, 918, 1077, 1088
BsmFI GGGAC 3 cut(s) 276, 327, 600
BsnI GGCC 4 cut(s) 446, 480, 537, 927
Bso31I GGTCTC 1 cut(s) 1088
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
BspACI CCGC 4 cut(s) 24, 482, 635, 928
BspANI GGCC 4 cut(s) 446, 480, 537, 927
BspCNI CTCAG 7 cut(s) 115, 508, 685, 787, 822, 1084, 1255
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 5 cut(s) 264, 522, 861, 1254, 1302
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 2 cut(s) 475, 952
BspQI GCTCTTC 2 cut(s) 929, 1281
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 1088
BsrDI GCAATG 2 cut(s) 241, 1185
BsrI ACTGG 2 cut(s) 105, 1206
BssECI CCNNGG 4 cut(s) 638, 1140, 1304, 1377
BssMI GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
BssT1I CCWWGG 4 cut(s) 638, 1140, 1304, 1377
Bst4CI ACNGT 4 cut(s) 412, 968, 1300, 1351
Bst6I CTCTTC 6 cut(s) 697, 929, 1080, 1182, 1281, 1353
BstC8I GCNNGC 4 cut(s) 482, 768, 992, 1401
BstF5I GGATG 3 cut(s) 175, 1233, 1369
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 7 cut(s) 61, 351, 470, 502, 556, 801, 1173
BstMAI GTCTC 5 cut(s) 184, 588, 918, 1077, 1088
BstMBI GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
BstMCI CGRYCG 1 cut(s) 928
BstMWI GCNNNNNNNGC 3 cut(s) 936, 1220, 1396
BstNSI RCATGY 1 cut(s) 740
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 6 cut(s) 118, 415, 463, 959, 1180, 1223
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZI CGGCCG 1 cut(s) 925
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 4 cut(s) 446, 480, 537, 927
BtsCI GGATG 3 cut(s) 175, 1233, 1369
BtsIMutI CAGTG 3 cut(s) 112, 1213, 1281
BveI ACCTGC 2 cut(s) 475, 952
Cac8I GCNNGC 4 cut(s) 482, 768, 992, 1401
CaiI CAGNNNCTG 2 cut(s) 410, 956
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 6 cut(s) 80, 263, 444, 479, 1034, 1226
CseI GACGC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 648, 969
CviAII CATG 2 cut(s) 62, 737
CviQI GTAC 2 cut(s) 648, 969
DpnI GATC 7 cut(s) 60, 350, 469, 501, 555, 800, 1172
DpnII GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 925
EagI CGGCCG 1 cut(s) 925
Eam1104I CTCTTC 6 cut(s) 697, 929, 1080, 1182, 1281, 1353
EarI CTCTTC 6 cut(s) 697, 929, 1080, 1182, 1281, 1353
EclXI CGGCCG 1 cut(s) 925
Eco130I CCWWGG 4 cut(s) 638, 1140, 1304, 1377
Eco147I AGGCCT 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 1088
Eco47I GGWCC 4 cut(s) 80, 263, 1034, 1226
Eco52I CGGCCG 1 cut(s) 925
Eco57I CTGAAG 5 cut(s) 20, 552, 578, 978, 1305
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 1034
EcoT14I CCWWGG 4 cut(s) 638, 1140, 1304, 1377
ErhI CCWWGG 4 cut(s) 638, 1140, 1304, 1377
FaeI CATG 2 cut(s) 65, 740
FaiI YATR 6 cut(s) 30, 63, 582, 663, 738, 1394
FalI AAGNNNNNCTT 6 cut(s) 338, 370, 923, 955, 1151, 1183
FaqI GGGAC 3 cut(s) 276, 327, 600
FatI CATG 2 cut(s) 61, 736
FauI CCCGC 1 cut(s) 489
FbaI TGATCA 2 cut(s) 58, 1170
Fnu4HI GCNGC 8 cut(s) 24, 132, 429, 452, 928, 948, 1194, 1212
FokI GGATG 3 cut(s) 182, 1220, 1356
Fsp4HI GCNGC 8 cut(s) 24, 132, 429, 452, 928, 948, 1194, 1212
FspBI CTAG 4 cut(s) 339, 639, 788, 1080
GlaI GCGC 1 cut(s) 45
GluI GCNGC 8 cut(s) 24, 132, 429, 452, 928, 948, 1194, 1212
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 446, 480, 537, 927
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 65, 740
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 847
HinfI GANTC 7 cut(s) 5, 125, 215, 222, 596, 953, 979
HphI GGTGA 3 cut(s) 68, 172, 1016
Hpy166II GTNNAC 2 cut(s) 163, 226
Hpy188I TCNGA 9 cut(s) 10, 19, 169, 499, 517, 558, 958, 1093, 1339
Hpy188III TCNNGA 7 cut(s) 83, 219, 788, 802, 811, 857, 1385
Hpy8I GTNNAC 2 cut(s) 163, 226
HpyAV CCTTC 5 cut(s) 298, 527, 617, 953, 1047
HpyCH4III ACNGT 4 cut(s) 412, 968, 1300, 1351
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 8 cut(s) 134, 301, 395, 740, 766, 947, 1178, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 936, 1220, 1396
HpySE526I ACGT 1 cut(s) 650
Hsp92II CATG 2 cut(s) 65, 740
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 2 cut(s) 58, 1170
Kzo9I GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
LguI GCTCTTC 2 cut(s) 929, 1281
LmnI GCTCC 5 cut(s) 436, 859, 880, 1220, 1324
Lsp1109I GCAGC 6 cut(s) 118, 415, 463, 959, 1180, 1223
LweI GCATC 2 cut(s) 382, 795
MaeI CTAG 4 cut(s) 339, 639, 788, 1080
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 2 cut(s) 891, 1132
MalI GATC 7 cut(s) 60, 350, 469, 501, 555, 800, 1172
MboI GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
MflI RGATCY 1 cut(s) 553
MluCI AATT 8 cut(s) 13, 90, 246, 290, 435, 760, 1021, 1405
MlyI GAGTC 4 cut(s) 134, 231, 590, 988
MroXI GAANNNNTTC 1 cut(s) 1299
MseI TTAA 5 cut(s) 72, 93, 611, 828, 1353
MslI CAYNNNNRTG 1 cut(s) 1338
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 936, 1220, 1396
NdeII GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
NlaIII CATG 2 cut(s) 65, 740
NlaIV GGNNCC 5 cut(s) 264, 522, 861, 1254, 1302
NmeAIII GCCGAG 1 cut(s) 903
NspI RCATGY 1 cut(s) 740
PaeR7I CTCGAG 1 cut(s) 229
PceI AGGCCT 1 cut(s) 537
PciSI GCTCTTC 2 cut(s) 929, 1281
PdmI GAANNNNTTC 1 cut(s) 1299
PfeI GAWTC 3 cut(s) 5, 215, 953
PkrI GCNGC 8 cut(s) 25, 133, 430, 453, 929, 949, 1195, 1213
PleI GAGTC 4 cut(s) 133, 230, 590, 987
PpsI GAGTC 4 cut(s) 133, 230, 590, 987
PpuMI RGGWCCY 1 cut(s) 1034
PshBI ATTAAT 1 cut(s) 93
PsiI TTATAA 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 1034
PspN4I GGNNCC 5 cut(s) 264, 522, 861, 1254, 1302
PspPI GGNCC 6 cut(s) 80, 263, 444, 479, 1034, 1226
PspPPI RGGWCCY 1 cut(s) 1034
PspXI VCTCGAGB 1 cut(s) 229
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 2 cut(s) 410, 956
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 2 cut(s) 649, 970
RsaNI GTAC 2 cut(s) 648, 969
RseI CAYNNNNRTG 1 cut(s) 1338
SapI GCTCTTC 2 cut(s) 929, 1281
SaqAI TTAA 5 cut(s) 72, 93, 611, 828, 1353
SatI GCNGC 8 cut(s) 24, 132, 429, 452, 928, 948, 1194, 1212
Sau3AI GATC 7 cut(s) 58, 348, 467, 499, 553, 798, 1170
Sau96I GGNCC 6 cut(s) 80, 263, 444, 479, 1034, 1226
SchI GAGTC 4 cut(s) 134, 231, 590, 988
SfaNI GCATC 2 cut(s) 382, 795
SfcI CTRYAG 1 cut(s) 945
Sfr274I CTCGAG 1 cut(s) 229
SinI GGWCC 4 cut(s) 80, 263, 1034, 1226
SlaI CTCGAG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 1338
SmlI CTYRAG 2 cut(s) 229, 722
SmoI CTYRAG 2 cut(s) 229, 722
Sse9I AATT 8 cut(s) 13, 90, 246, 290, 435, 760, 1021, 1405
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 4 cut(s) 24, 482, 635, 928
SspMI CTAG 4 cut(s) 339, 639, 788, 1080
StuI AGGCCT 1 cut(s) 537
StyI CCWWGG 4 cut(s) 638, 1140, 1304, 1377
TaaI ACNGT 4 cut(s) 412, 968, 1300, 1351
TaiI ACGT 1 cut(s) 653
TaqI TCGA 2 cut(s) 230, 473
TasI AATT 8 cut(s) 13, 90, 246, 290, 435, 760, 1021, 1405
TatI WGTACW 1 cut(s) 968
TauI GCSGC 2 cut(s) 26, 930
TfiI GAWTC 3 cut(s) 5, 215, 953
Tru1I TTAA 5 cut(s) 72, 93, 611, 828, 1353
Tru9I TTAA 5 cut(s) 72, 93, 611, 828, 1353
TscAI CASTG 3 cut(s) 112, 1213, 1288
TseI GCWGC 6 cut(s) 131, 428, 451, 947, 1193, 1211
TspDTI ATGAA 5 cut(s) 383, 699, 1196, 1200, 1371
TspRI CASTG 3 cut(s) 112, 1213, 1288
VpaK11BI GGWCC 4 cut(s) 80, 263, 1034, 1226
VspI ATTAAT 1 cut(s) 93
XapI RAATTY 1 cut(s) 1021
XbaI TCTAGA 1 cut(s) 787
XceI RCATGY 1 cut(s) 740
XhoI CTCGAG 1 cut(s) 229
XmaJI CCTAGG 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 1299
XspI CTAG 4 cut(s) 339, 639, 788, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.