Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8198748.1

Orthogroup ID

OG0004715

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 698

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8198748.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ctgattgcaattccacctgtgttgcaggaaaggggaccgaaagtttctgttcagtcaaagcaatccagagtgcagaagggtcaaggtaagagtaagattgagaagccccctagtcccaagagcaccttgccaattcggatgaagaaaagcaaagatggaaatgatgcagaggctacagctactgtttccaatggttcagcaggtccaaattcactcgccaagcagcctaacaagagtagatcattgaatggccaacaggttcagttatccaatcagcaacctaaacaatctgaggcaccatcgactgaaggccttgtggaggagacaaatctgaagccgctaaacaaaggctcctataataaggctgatggagactcccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

127

Amino Acids

13.5

Weight (kDa)

9.95

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25480 AT2G25480 AT4G32330 AT4G32330 AT4G32330 AT4G32330
fragaria_vesca	FvH4_2g29090 FvH4_2g29090 FvH4_2g29090
malus_domestica	MD08G1150300.v1.1 MD15G1125300.v1.1
prunus_persica	Prupe.1G480800_v2.0.a1
pyrus_communis	pycom08g12610 pycom15g11290
rosa_chinensis	RchiOBHm_Chr6g0297971
rosa_laevigata	RLG00000011547
rosa_multiflora	Rmu_co8198748.1_g000001 Rmu_sc0007302.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170040 Rroxscaffold_7G00178880
rosa_rugosa	Rorug06G0277200 Rorug06G0277300 Rorug06G0277400 Rorug06G0277500
rosa_samantha	Rh6AG387800 Rh6AG387900 Rh6BG396100 Rh6CG402100 Rh6DG388300
rosa_wichuraiana	Rw6G033780 Rw6G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	295
AciI	CCGC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	2 cut(s)	327, 353
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	317, 366
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	250, 310
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	35, 203
AvaII	GGWCC	2 cut(s)	35, 203
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	3 cut(s)	149, 307, 362
BcoDI	GTCTC	2 cut(s)	317, 366
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	224, 338
BlsI	GCNGC	2 cut(s)	225, 339
Bme18I	GGWCC	2 cut(s)	35, 203
BmgT120I	GGNCC	2 cut(s)	35, 203
BmiI	GGNNCC	3 cut(s)	36, 297, 352
BmsI	GCATC	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	252, 312
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	48, 99
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	317, 366
BsmFI	GGGAC	2 cut(s)	48, 99
BsnI	GGCC	2 cut(s)	252, 312
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	252, 312
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	36, 297, 352
BspMI	ACCTGC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	295
BssMI	GATC	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	317, 366
BstMBI	GATC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	252, 312
BtsCI	GGATG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	35, 203
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviJI	RGCY	9 cut(s)	106, 173, 179, 226, 252, 312, 337, 351, 365
CviKI_1	RGCY	9 cut(s)	106, 173, 179, 226, 252, 312, 337, 351, 365
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	35, 203
Eco57I	CTGAAG	2 cut(s)	327, 353
EcoNI	CCTNNNNNAGG	1 cut(s)	317
FaiI	YATR	1 cut(s)	357
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	48, 99
Fnu4HI	GCNGC	2 cut(s)	224, 338
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	224, 338
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	2 cut(s)	224, 338
HaeIII	GGCC	2 cut(s)	252, 312
HinfI	GANTC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	138, 292, 333
Hpy188III	TCNNGA	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	70, 302
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	8, 25, 73, 167
HpyF3I	CTNAG	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	5 cut(s)	11, 30, 79, 186, 242
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	111
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	3 cut(s)	9, 132, 208
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	3 cut(s)	163, 286, 313
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	252
NdeII	GATC	1 cut(s)	239
NlaIV	GGNNCC	3 cut(s)	36, 297, 352
PceI	AGGCCT	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	225, 339
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PspN4I	GGNNCC	3 cut(s)	36, 297, 352
PspPI	GGNCC	2 cut(s)	35, 203
PstNI	CAGNNNCTG	1 cut(s)	182
SatI	GCNGC	2 cut(s)	224, 338
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	2 cut(s)	35, 203
SchI	GAGTC	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	19, 88, 128, 181, 205, 261, 283
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	2 cut(s)	35, 203
Sse9I	AATT	3 cut(s)	9, 132, 208
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	302
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	9, 132, 208
TauI	GCSGC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	35, 203
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.