Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Reverse (-)

40164553 .. 40167673

Gene Structure 3121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G481000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCATCAACTACCTGCACCGTCTCCCTTATCTCCTCCACTAAATCTTCCTCCACATTCCCATTAAAATTCAATTTTCCCGCCAAATCCCCCTCAACGGTCAATTTGCGCGCCAACCCTCTCACCGCCGCCAACGCCGCTTCTTCAGGAAAAGATCTCGTCTTGGGAAGAAGAGGACTGGTATTTACACTTACAGCCACACTGCCATTGCTTCTTCCCTTCTCTGAATGCATAGAGGCCTTTGCTGCGAAGGCGGTAGAGTCGGATATAAGTGAATATGAGCTTGTGAAGGAGGAGATTAGGAAGGTGGTGACCAAGGGTAAGGCTGCTGGTGTGCTTCGTTTGGTGTTTCATGATGCAGGGACCTTTCAAGTTGATGAGAATTCAGGTGGCATGAATGGTTCTGTCATTTACGAACTTGATAGACCAGAAAATAAAGGTCTTAAAAGTCCTTTCAAGATTCTAGAGAAAGCAAAGAGTGAGTGCTGTGCTAACGTGTGGATGTTTCCAAAATTAGTGTCTTGGGCAGACATGATTTCTGTGGCTGGAGCTGAAGCAGTTTCAATATGTGGAGGTCCAACAATCCAAGTTTCGTTGGGCAGATTAGATTCAAAGGAGCCTGATCCTGAAGGAAAACTTCCTGCAGAATCTCTGGATGCCTTTGCTCTGAGGCAAAGCTTTCAAACAAAAGGCTTTTCAACTCAAGAACTTGTTGCTCTGTCAGGAGCTCATACCATTGGAAATAAAGGTTTCGGAAGTCCAACAGTTTTTGACAATACATACTTCAAAATTCTGCTTGAGAAACCATCTTCGGGTAGTATGATTGGGCTTCCTTCAGATCGTGCGCTTGCCAAGGATGATGAATGCTTAAGATGGATCACAAAGTATGCTGAGGACCAGGACGTTTTCTTTGAAGATTTCAAGAAGGCTTATGTCAAACTAGTGAATTCAGGAGCCAGGTGGAAGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

35.02

Weight (kDa)

7.53

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccII	CGCG	1 cut(s)	111
AciI	CCGC	5 cut(s)	81, 126, 129, 138, 254
AclWI	GGATC	2 cut(s)	617, 884
AcsI	RAATTY	4 cut(s)	68, 382, 789, 946
AcuI	CTGAAG	4 cut(s)	129, 573, 648, 819
AfiI	CCNNNNNNNGG	2 cut(s)	97, 812
AflII	CTTAAG	1 cut(s)	868
AflIII	ACRYGT	1 cut(s)	495
AhlI	ACTAGT	1 cut(s)	940
AjnI	CCWGG	2 cut(s)	897, 956
AluBI	AGCT	5 cut(s)	283, 551, 678, 728, 969
AluI	AGCT	5 cut(s)	283, 551, 678, 728, 969
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	2 cut(s)	617, 884
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	245, 326
ApoI	RAATTY	4 cut(s)	68, 382, 789, 946
ArsI	GACNNNNNNTTYG	4 cut(s)	503, 535, 893, 925
AspLEI	GCGC	3 cut(s)	111, 113, 847
AspS9I	GGNCC	3 cut(s)	363, 575, 895
AsuHPI	GGTGA	2 cut(s)	115, 322
AvaII	GGWCC	3 cut(s)	363, 575, 895
BanII	GRGCYC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	730
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	232, 313
BccI	CCATC	2 cut(s)	814, 867
BciT130I	CCWGG	2 cut(s)	899, 958
BcoDI	GTCTC	1 cut(s)	28
BcuI	ACTAGT	1 cut(s)	940
BfaI	CTAG	2 cut(s)	464, 941
BfmI	CTRYAG	1 cut(s)	642
BfrI	CTTAAG	1 cut(s)	868
BfuAI	ACCTGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	4 cut(s)	129, 138, 246, 327
BlsI	GCNGC	4 cut(s)	130, 139, 247, 328
Bme1390I	CCNGG	2 cut(s)	899, 958
Bme18I	GGWCC	3 cut(s)	363, 575, 895
BmgT120I	GGNCC	3 cut(s)	363, 575, 895
BmiI	GGNNCC	3 cut(s)	364, 618, 955
BmrFI	CCNGG	2 cut(s)	899, 958
BmsI	GCATC	3 cut(s)	14, 346, 646
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	891
BpuEI	CTTGAG	2 cut(s)	687, 818
BsaJI	CCNNGG	2 cut(s)	315, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 812
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	899, 958
BseDI	CCNNGG	2 cut(s)	315, 852
BseGI	GGATG	3 cut(s)	507, 661, 862
BseLI	CCNNNNNNNGG	2 cut(s)	97, 812
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	659, 882
BseNI	ACTGG	1 cut(s)	183
BsePI	GCGCGC	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	25, 308
BseXI	GCAGC	2 cut(s)	232, 313
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	730
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	97, 812
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	233, 869
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	154, 622, 838, 876
BspACI	CCGC	5 cut(s)	81, 126, 129, 138, 254
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	660, 883
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	364, 618, 955
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	2 cut(s)	617, 884
BspQI	GCTCTTC	1 cut(s)	959
BspTI	CTTAAG	1 cut(s)	868
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	315, 852
BssHII	GCGCGC	1 cut(s)	109
BssMI	GATC	4 cut(s)	154, 622, 838, 876
BssT1I	CCWWGG	2 cut(s)	315, 852
Bst2UI	CCWGG	2 cut(s)	899, 958
Bst4CI	ACNGT	3 cut(s)	22, 100, 766
Bst6I	CTCTTC	2 cut(s)	166, 959
BstAFI	CTTAAG	1 cut(s)	868
BstC8I	GCNNGC	2 cut(s)	111, 849
BstDEI	CTNAG	2 cut(s)	668, 891
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	507, 661, 862
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	111, 113, 847
BstKTI	GATC	4 cut(s)	157, 625, 841, 879
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	4 cut(s)	154, 622, 838, 876
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 137, 245, 251
BstNI	CCWGG	2 cut(s)	899, 958
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	897, 956
BstSFI	CTRYAG	1 cut(s)	642
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	232, 313
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	3 cut(s)	507, 661, 862
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	111, 849
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	3 cut(s)	111, 113, 847
Cfr13I	GGNCC	3 cut(s)	363, 575, 895
CviAII	CATG	3 cut(s)	353, 394, 532
DdeI	CTNAG	2 cut(s)	668, 891
DpnI	GATC	4 cut(s)	156, 624, 840, 878
DpnII	GATC	4 cut(s)	154, 622, 838, 876
Eam1104I	CTCTTC	2 cut(s)	166, 959
EarI	CTCTTC	2 cut(s)	166, 959
Ecl136II	GAGCTC	1 cut(s)	728
Eco130I	CCWWGG	2 cut(s)	315, 852
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	730
Eco47I	GGWCC	3 cut(s)	363, 575, 895
Eco53kI	GAGCTC	1 cut(s)	728
Eco57I	CTGAAG	4 cut(s)	129, 573, 648, 819
Eco91I	GGTNACC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	382, 946
EcoRII	CCWGG	2 cut(s)	897, 956
EcoT14I	CCWWGG	2 cut(s)	315, 852
EcoT22I	ATGCAT	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	2 cut(s)	315, 852
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	3 cut(s)	356, 397, 535
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	3 cut(s)	352, 393, 531
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	129, 138, 246, 327
FokI	GGATG	3 cut(s)	514, 668, 869
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	4 cut(s)	129, 138, 246, 327
FspBI	CTAG	2 cut(s)	464, 941
GlaI	GCGC	3 cut(s)	110, 112, 846
GluI	GCNGC	4 cut(s)	129, 138, 246, 327
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	111, 113, 847
Hin1II	CATG	3 cut(s)	356, 397, 535
Hin6I	GCGC	3 cut(s)	109, 111, 845
HinP1I	GCGC	3 cut(s)	109, 111, 845
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	4 cut(s)	260, 460, 608, 647
HphI	GGTGA	2 cut(s)	115, 322
Hpy188I	TCNGA	5 cut(s)	226, 265, 669, 755, 838
HpyAV	CCTTC	7 cut(s)	229, 244, 283, 298, 623, 843, 919
HpyCH4III	ACNGT	3 cut(s)	22, 100, 766
HpyCH4IV	ACGT	2 cut(s)	495, 903
HpyCH4V	TGCA	4 cut(s)	18, 231, 359, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 137, 245, 251
HpyF3I	CTNAG	2 cut(s)	668, 891
HpySE526I	ACGT	2 cut(s)	495, 903
Hsp92II	CATG	3 cut(s)	356, 397, 535
HspAI	GCGC	3 cut(s)	109, 111, 845
Kzo9I	GATC	4 cut(s)	154, 622, 838, 876
LguI	GCTCTTC	1 cut(s)	959
LmnI	GCTCC	4 cut(s)	548, 616, 725, 953
Lsp1109I	GCAGC	2 cut(s)	232, 313
LweI	GCATC	3 cut(s)	14, 346, 646
MaeI	CTAG	2 cut(s)	464, 941
MaeII	ACGT	2 cut(s)	495, 903
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	156, 624, 840, 878
MboI	GATC	4 cut(s)	154, 622, 838, 876
MboII	GAAGA	7 cut(s)	39, 135, 180, 183, 206, 801, 926
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	7 cut(s)	68, 73, 103, 382, 512, 789, 946
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	3 cut(s)	243, 602, 785
Mph1103I	ATGCAT	1 cut(s)	233
MseI	TTAA	3 cut(s)	65, 444, 869
MspCI	CTTAAG	1 cut(s)	868
MspR9I	CCNGG	2 cut(s)	899, 958
Mva1269I	GAATGC	2 cut(s)	233, 869
MvaI	CCWGG	2 cut(s)	899, 958
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	134, 137, 245, 251
NdeII	GATC	4 cut(s)	154, 622, 838, 876
NlaIII	CATG	3 cut(s)	356, 397, 535
NlaIV	GGNNCC	3 cut(s)	364, 618, 955
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	233
PagI	TCATGA	1 cut(s)	352
PauI	GCGCGC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	959
PctI	GAATGC	2 cut(s)	233, 869
PfeI	GAWTC	3 cut(s)	460, 608, 647
PkrI	GCNGC	4 cut(s)	130, 139, 247, 328
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	897, 956
PspEI	GGTNACC	1 cut(s)	310
PspGI	CCWGG	2 cut(s)	897, 956
PspN4I	GGNNCC	3 cut(s)	364, 618, 955
PspPI	GGNCC	3 cut(s)	363, 575, 895
PspPPI	RGGWCCY	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	730
SapI	GCTCTTC	1 cut(s)	959
SaqAI	TTAA	3 cut(s)	65, 444, 869
SatI	GCNGC	4 cut(s)	129, 138, 246, 327
Sau3AI	GATC	4 cut(s)	154, 622, 838, 876
Sau96I	GGNCC	3 cut(s)	363, 575, 895
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	899, 958
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	14, 346, 646
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	3 cut(s)	363, 575, 895
SmlI	CTYRAG	3 cut(s)	702, 797, 868
SmoI	CTYRAG	3 cut(s)	702, 797, 868
SpeI	ACTAGT	1 cut(s)	940
Sse9I	AATT	7 cut(s)	68, 73, 103, 382, 512, 789, 946
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	5 cut(s)	81, 126, 129, 138, 254
SspMI	CTAG	2 cut(s)	464, 941
SstI	GAGCTC	1 cut(s)	730
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	897, 956
StyI	CCWWGG	2 cut(s)	315, 852
TaaI	ACNGT	3 cut(s)	22, 100, 766
TaiI	ACGT	2 cut(s)	498, 906
TasI	AATT	7 cut(s)	68, 73, 103, 382, 512, 789, 946
TauI	GCSGC	2 cut(s)	131, 140
TfiI	GAWTC	3 cut(s)	460, 608, 647
Tru1I	TTAA	3 cut(s)	65, 444, 869
Tru9I	TTAA	3 cut(s)	65, 444, 869
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	245, 326
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	341, 410, 876
TspRI	CASTG	1 cut(s)	207
Vha464I	CTTAAG	1 cut(s)	868
VpaK11BI	GGWCC	3 cut(s)	363, 575, 895
XapI	RAATTY	4 cut(s)	68, 382, 789, 946
XbaI	TCTAGA	1 cut(s)	463
XspI	CTAG	2 cut(s)	464, 941
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.