Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Forward (+)

58672909 .. 58696558

Gene Structure 23650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG387700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCATCATCATCAACTACCTCCACCGCCGTCTCCCTCCTCTGCTCCGCAACCTCTTCCTCCAGATTTCCATTCAGTACAACTCTTCCCGCCAAATCCTCACCAACGCTCAATTTTCGCGCCAACTCTCTCCCCGCCACCCATGCAGCTTCTTCTTCTTCTTCAGTATTCCTATTCAATTTTACAGGTGAAGATGAGATTTTGGGGAGAAGAGGACTGGTGTTCACACTCACAGCCACACTGCCATTGCTTCTTCCTTTCTCGGAATCCATGGAGGCCTTCACAGCCAAGGCGGTGGAGCCAGATACAAGTATATATGAGGTTATGAAGGAAGAGATTAGGAAAGTTGTGTCTAAGGGCAAAGCTGCTGGTGTGCTTCGTTTTGTATTTCACGATGCAGGGACCTTTCAATTGGATGACAATTCGGGTGGGATGAATGGTTCAGTCATATATGAACTCGATAGACCCGAAAATAAAGGTCTTAAAACTCCTTTTAAGATTTTAGAGAAAGCAAAGACTGAGGTGGATGCAGTACAACCAGTATCGTGGGCAGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTTCAGTATGTGGAGGTCCGACTATCCCAGTTGCATTGGGCAGACTAGACTCAAAGGAGCCTGATCCTGAAGGAAAACTTCCTGAAGAAACTCTTGATGCATATGGTCTAAAGCAAAGCTTTCGAGCAAAAGGCTTATCAACTCAAGAACTTGTTGCTCTGTCAGGTGCCCATACTCTGGGAAATAAAGGTTTTGGAAGCCCGACTGTTTTTGACAATTCATACTTCAAAGTTCTTCTTGAGGAATCTGTGTCCTCAGGTAGTATGTCAAGCATGACTGGACTTCCTTCAGATCGCGCACTTCCCAAGGATGGTGAATGCTTAAGTTTCCCTAAATTCAATTTCCATCACATGCATGTCTGCAATCAACTTAGCTTTAAGCAAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

324

Amino Acids

34.6

Weight (kDa)

5.75

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	109 - 301	3.8e-40	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	749
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccII	CGCG	2 cut(s)	120, 879
AciI	CCGC	5 cut(s)	27, 48, 90, 135, 293
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	5 cut(s)	147, 597, 672, 687, 855
AfaI	GTAC	2 cut(s)	79, 534
AfiI	CCNNNNNNNGG	2 cut(s)	760, 893
AflII	CTTAAG	1 cut(s)	904
AgsI	TTSAA	4 cut(s)	178, 410, 811, 922
AloI	GAACNNNNNNTCC	2 cut(s)	424, 456
AluBI	AGCT	5 cut(s)	149, 365, 575, 702, 957
AluI	AGCT	5 cut(s)	149, 365, 575, 702, 957
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	641
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	146, 365
ApoI	RAATTY	1 cut(s)	917
AspLEI	GCGC	2 cut(s)	122, 881
AspS9I	GGNCC	2 cut(s)	402, 599
AsuHPI	GGTGA	3 cut(s)	93, 200, 908
AvaII	GGWCC	2 cut(s)	402, 599
AxyI	CCTNAGG	1 cut(s)	838
BaeGI	GKGCMC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	749
BbvI	GCAGC	2 cut(s)	158, 352
BccI	CCATC	2 cut(s)	887, 936
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	629
BfrI	CTTAAG	1 cut(s)	904
BisI	GCNGC	2 cut(s)	147, 366
BlsI	GCNGC	2 cut(s)	148, 367
Bme18I	GGWCC	2 cut(s)	402, 599
BmgT120I	GGNCC	2 cut(s)	402, 599
BmiI	GGNNCC	4 cut(s)	300, 403, 642, 751
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	4 cut(s)	14, 385, 517, 670
BmuI	ACTGGG	1 cut(s)	605
BpmI	CTGGAG	2 cut(s)	46, 591
BpuEI	CTTGAG	2 cut(s)	711, 842
BsaJI	CCNNGG	3 cut(s)	270, 288, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	760, 893
Bse1I	ACTGG	4 cut(s)	222, 539, 611, 865
Bse21I	CCTNAGG	1 cut(s)	838
Bse3DI	GCAATG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	270, 288, 888
BseGI	GGATG	4 cut(s)	421, 438, 532, 898
BseLI	CCNNNNNNNGG	2 cut(s)	760, 893
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	510, 852
BseNI	ACTGG	4 cut(s)	222, 539, 611, 865
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	2 cut(s)	158, 352
Bsh1236I	CGCG	2 cut(s)	120, 879
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	749
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	760, 893
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	2 cut(s)	646, 874
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	5 cut(s)	27, 48, 90, 135, 293
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	511, 851
BspFNI	CGCG	2 cut(s)	120, 879
BspLI	GGNNCC	4 cut(s)	300, 403, 642, 751
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	749
BspTI	CTTAAG	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	4 cut(s)	222, 539, 611, 865
BssECI	CCNNGG	3 cut(s)	270, 288, 888
BssMI	GATC	2 cut(s)	646, 874
BssT1I	CCWWGG	3 cut(s)	270, 288, 888
Bst4CI	ACNGT	1 cut(s)	790
Bst6I	CTCTTC	4 cut(s)	61, 90, 205, 327
BstAFI	CTTAAG	1 cut(s)	904
BstDEI	CTNAG	4 cut(s)	354, 519, 838, 953
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	4 cut(s)	421, 438, 532, 898
BstFNI	CGCG	2 cut(s)	120, 879
BstHHI	GCGC	2 cut(s)	122, 881
BstKTI	GATC	2 cut(s)	649, 877
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	646, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 284
BstNSI	RCATGY	2 cut(s)	937, 941
BstSLI	GKGCMC	1 cut(s)	754
BstUI	CGCG	2 cut(s)	120, 879
BstV1I	GCAGC	2 cut(s)	158, 352
BstXI	CCANNNNNNTGG	2 cut(s)	295, 546
Bsu36I	CCTNAGG	1 cut(s)	838
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	4 cut(s)	421, 438, 532, 898
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	122, 881
Cfr13I	GGNCC	2 cut(s)	402, 599
Csp6I	GTAC	2 cut(s)	78, 533
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	6 cut(s)	143, 271, 556, 856, 934, 938
CviQI	GTAC	2 cut(s)	78, 533
DdeI	CTNAG	4 cut(s)	354, 519, 838, 953
DpnI	GATC	2 cut(s)	648, 876
DpnII	GATC	2 cut(s)	646, 874
Eam1104I	CTCTTC	4 cut(s)	61, 90, 205, 327
EarI	CTCTTC	4 cut(s)	61, 90, 205, 327
Eco130I	CCWWGG	3 cut(s)	270, 288, 888
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	402, 599
Eco57I	CTGAAG	5 cut(s)	147, 597, 672, 687, 855
Eco81I	CCTNAGG	1 cut(s)	838
EcoO109I	RGGNCCY	1 cut(s)	402
EcoT14I	CCWWGG	3 cut(s)	270, 288, 888
EcoT22I	ATGCAT	2 cut(s)	685, 939
ErhI	CCWWGG	3 cut(s)	270, 288, 888
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	146, 274, 559, 859, 937, 941
FalI	AAGNNNNNCTT	8 cut(s)	645, 677, 660, 692, 686, 718, 804, 836
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	6 cut(s)	142, 270, 555, 855, 933, 937
FauI	CCCGC	2 cut(s)	97, 142
FauNDI	CATATG	1 cut(s)	685
Fnu4HI	GCNGC	2 cut(s)	147, 366
FokI	GGATG	4 cut(s)	428, 445, 539, 905
Fsp4HI	GCNGC	2 cut(s)	147, 366
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	2 cut(s)	121, 880
GluI	GCNGC	2 cut(s)	147, 366
GsuI	CTGGAG	2 cut(s)	46, 591
HaeIII	GGCC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	122, 881
Hin1II	CATG	6 cut(s)	146, 274, 559, 859, 937, 941
Hin6I	GCGC	2 cut(s)	120, 879
HinP1I	GCGC	2 cut(s)	120, 879
HindIII	AAGCTT	1 cut(s)	700
HinfI	GANTC	3 cut(s)	266, 632, 827
HphI	GGTGA	3 cut(s)	93, 200, 908
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	265, 603, 874
Hpy188III	TCNNGA	7 cut(s)	63, 392, 650, 665, 677, 728, 821
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	4 cut(s)	289, 322, 647, 879
HpyCH4III	ACNGT	1 cut(s)	790
HpyCH4V	TGCA	7 cut(s)	146, 398, 530, 617, 683, 937, 945
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 284
HpyF3I	CTNAG	4 cut(s)	354, 519, 838, 953
Hsp92II	CATG	6 cut(s)	146, 274, 559, 859, 937, 941
HspAI	GCGC	2 cut(s)	120, 879
Kzo9I	GATC	2 cut(s)	646, 874
LmnI	GCTCC	4 cut(s)	50, 298, 572, 640
Lsp1109I	GCAGC	2 cut(s)	158, 352
LweI	GCATC	4 cut(s)	14, 385, 517, 670
MaeI	CTAG	1 cut(s)	629
MalI	GATC	2 cut(s)	648, 876
MboI	GATC	2 cut(s)	646, 874
MfeI	CAATTG	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	7 cut(s)	112, 178, 410, 421, 799, 917, 922
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	1 cut(s)	626
Mph1103I	ATGCAT	2 cut(s)	685, 939
MseI	TTAA	4 cut(s)	483, 495, 905, 960
MslI	CAYNNNNRTG	1 cut(s)	936
MspCI	CTTAAG	1 cut(s)	904
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	905
MvnI	CGCG	2 cut(s)	120, 879
MwoI	GCNNNNNNNGC	2 cut(s)	143, 284
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	2 cut(s)	646, 874
NlaIII	CATG	6 cut(s)	146, 274, 559, 859, 937, 941
NlaIV	GGNNCC	4 cut(s)	300, 403, 642, 751
NsiI	ATGCAT	2 cut(s)	685, 939
NspI	RCATGY	2 cut(s)	937, 941
PceI	AGGCCT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	1 cut(s)	905
PfeI	GAWTC	2 cut(s)	266, 827
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	148, 367
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PpuMI	RGGWCCY	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	402
PspN4I	GGNNCC	4 cut(s)	300, 403, 642, 751
PspPI	GGNCC	2 cut(s)	402, 599
PspPPI	RGGWCCY	1 cut(s)	402
RsaI	GTAC	2 cut(s)	79, 534
RsaNI	GTAC	2 cut(s)	78, 533
RseI	CAYNNNNRTG	1 cut(s)	936
SaqAI	TTAA	4 cut(s)	483, 495, 905, 960
SatI	GCNGC	2 cut(s)	147, 366
Sau3AI	GATC	2 cut(s)	646, 874
Sau96I	GGNCC	2 cut(s)	402, 599
SchI	GAGTC	1 cut(s)	626
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	4 cut(s)	14, 385, 517, 670
SinI	GGWCC	2 cut(s)	402, 599
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	3 cut(s)	726, 821, 904
SmoI	CTYRAG	3 cut(s)	726, 821, 904
Sse9I	AATT	7 cut(s)	112, 178, 410, 421, 799, 917, 922
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	5 cut(s)	27, 48, 90, 135, 293
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	278
StyI	CCWWGG	3 cut(s)	270, 288, 888
TaaI	ACNGT	1 cut(s)	790
TaqI	TCGA	2 cut(s)	459, 706
TasI	AATT	7 cut(s)	112, 178, 410, 421, 799, 917, 922
TatI	WGTACW	2 cut(s)	77, 532
TfiI	GAWTC	2 cut(s)	266, 827
Tru1I	TTAA	4 cut(s)	483, 495, 905, 960
Tru9I	TTAA	4 cut(s)	483, 495, 905, 960
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	2 cut(s)	146, 365
TspDTI	ATGAA	4 cut(s)	341, 449, 468, 792
TspRI	CASTG	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	904
VpaK11BI	GGWCC	2 cut(s)	402, 599
XapI	RAATTY	1 cut(s)	917
XceI	RCATGY	2 cut(s)	937, 941
XspI	CTAG	1 cut(s)	629
Zsp2I	ATGCAT	2 cut(s)	685, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.