Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034417.1

Orthogroup ID

OG0009416

Physical Location & Seq

Genomic Coordinates Forward (+)

140 .. 1585

Gene Structure 1446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034417.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgattgctgtggctggagccgaagcagtttcattatgtggaggtccgactatcccagttgcattgggcagactagactcaaaggagcctgatcctgaaggaaaacttcctgaagaaactcttgatgcatatggtctaaagcaaagctttcgagcaaaaggcttatcaactcaagaacttgttgctctgtcaggtgcccatactctgggaaataaaggttttggaagcccgactgtttttgacaattcatacttcaaagttcttcttgaggaatctgtgtcctcaggtagtatgtcaagcatgactggacttccttcagatcgcgcacttcccaaggatggtgaatgcttaagatggataaaaaagtatgctgacagtgagaacagtttctttgaagattttgaaaaggcttacatcaagttggtcaattcaggagcaaggtggaagagcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009636 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010431 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0021700 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071695 GO:0072593 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

151

Amino Acids

16.21

Weight (kDa)

5.24

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32320
fragaria_vesca	FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080 FvH4_2g29080
malus_domestica	MD15G1125400.v1.1
prunus_persica	Prupe.1G481000_v2.0.a1
pyrus_communis	pycom08g12640
rosa_chinensis	RchiOBHm_Chr6g0297961
rosa_laevigata	RLG00000011548
rosa_multiflora	Rmu_sc0007302.1_g000002 Rmu_sc0034417.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170050 Rroxscaffold_7G00178890
rosa_rugosa	Rorug06G0277100 Rorug06G0277200
rosa_samantha	Rh6AG387700 Rh6CG401900 Rh6DG388200
rosa_wichuraiana	Rw6G033770 Rw6G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccII	CGCG	1 cut(s)	324
AclWI	GGATC	1 cut(s)	86
AcuI	CTGAAG	3 cut(s)	117, 132, 300
AfiI	CCNNNNNNNGG	2 cut(s)	205, 338
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	3 cut(s)	256, 395, 404
AluBI	AGCT	2 cut(s)	147, 450
AluI	AGCT	2 cut(s)	147, 450
AlwI	GGATC	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	194
BccI	CCATC	2 cut(s)	332, 348
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BfaI	CTAG	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	19, 87, 196
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	156, 287
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 338
Bse1I	ACTGG	2 cut(s)	56, 310
Bse21I	CCTNAGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	205, 338
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	56, 310
BseSI	GKGCMC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	205, 338
BsmI	GAATGC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	91, 319
BspCNI	CTCAG	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	19, 87, 196
BspPI	GGATC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	56, 310
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	91, 319
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	235, 377, 386
Bst6I	CTCTTC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	94, 322
BstMBI	GATC	2 cut(s)	91, 319
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	382
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	8 cut(s)	14, 20, 88, 147, 162, 228, 410, 450
CviKI_1	RGCY	8 cut(s)	14, 20, 88, 147, 162, 228, 410, 450
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	2 cut(s)	93, 321
DpnII	GATC	2 cut(s)	91, 319
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	3 cut(s)	117, 132, 300
Eco81I	CCTNAGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	304
FaiI	YATR	8 cut(s)	37, 130, 132, 201, 250, 293, 302, 369
FalI	AAGNNNNNCTT	8 cut(s)	90, 122, 105, 137, 131, 163, 249, 281
FatI	CATG	1 cut(s)	300
FauNDI	CATATG	1 cut(s)	130
FokI	GGATG	1 cut(s)	350
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	2 cut(s)	77, 272
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	48, 319
Hpy188III	TCNNGA	6 cut(s)	95, 110, 122, 173, 266, 432
HpyAV	CCTTC	2 cut(s)	92, 324
HpyCH4III	ACNGT	3 cut(s)	235, 377, 386
HpyCH4V	TGCA	2 cut(s)	62, 128
HpyF3I	CTNAG	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	91, 319
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	3 cut(s)	17, 85, 434
LpnPI	CCDG	9 cut(s)	69, 102, 108, 123, 177, 191, 270, 291, 417
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	74
MalI	GATC	2 cut(s)	93, 321
MboI	GATC	2 cut(s)	91, 319
MboII	GAAGA	3 cut(s)	125, 254, 407
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	2 cut(s)	244, 427
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	35, 262, 292
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	350
MvnI	CGCG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	91, 319
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	3 cut(s)	19, 87, 196
NsiI	ATGCAT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	19, 87, 196
PspPI	GGNCC	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	91, 319
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	46, 149, 196, 220, 289, 443, 452
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	171, 266, 349
SmoI	CTYRAG	3 cut(s)	171, 266, 349
Sse9I	AATT	2 cut(s)	244, 427
SspMI	CTAG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	235, 377, 386
TaqI	TCGA	1 cut(s)	151
TasI	AATT	2 cut(s)	244, 427
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	21, 237
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.