FvH4_2g31860

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011407
Physical Location & Seq
Forward (+)
24315931 .. 24323509
7579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31860.t1

Sequence Viewer

Length: 1092 bp
ATGCCACTCTTCTCTCATCGCCACTCTTCCCCTCTCCCCACCGCCACCTACTCCTCCAAGCTCCTCAAGCCCCTCAAACCCAACTCCGCCTCTGTCCCCACTCGCACTCCCGTACCCATTATCGTCTTCTCCCTCATCTCCCTCCTCATCGGCCTCGCCGGAACTATCTTCGCCGTCGCCGCCATCCGCCGCTCCCGACCCCTCCCCGTTTTCCGATGCGGCAAATCCGATGATACTTTCCGTGCATTCTACTCCATCTCCAGTTCTCGGAAACTCGATCACAATGCCGGTCTGCTTGAACGGCCTAAGCTTCTTGGCTTCGTCGGAATTTTAACCGGGTTCCGGGGAGCCGATCGCCGCGCAGCCATGCGCAGCACTTGGTTTCCTTCCGACCCTGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCGTTTAGGTTTGTTATTGGGAGATCGAAAGATTCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATCAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCCGCATTTCAACACTTTGAAGCAGATTATTATGTCAAAGCTGATGATAATATTTATCTGCGCCCAGATCGACTAGCAATACTTCTAGCTAAGGAGAGAACAGATTCACGAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATAACTGACCCAAAAATGAAATGGTATGAGAAGTCAGGACATCTGATTGGGAATGAATACTATCTCCATGCTTATGGTCCTATCTATGTTCTGTCTGCAGAAGTGGTAGCTTCATTGGCAACAGCTAGAAATGACAGTTTGAGAATGTTTAACAATGAAGATGTCACAATCGGATCATGGATGCTTGCTATGAATGTTCATCATGAGGATAATAGGTTTTTATGTGACCCTCGGTGCTCACCTAAATCCATTGCAGTGTGGGACATCCCGAAATGTTCAGGTTTGTGCAATCCAGCTCTTCGGATGAAAGAGCTTCATGCAATGAGCATGTGCTCCAAAAGTCCAACTCTGCTCTCTAACGATGACTGA

Protein Analysis

364

Amino Acids

40.99

Weight (kDa)

9.31

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 118 - 312 1.3e-49 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 360
AciI CCGC 8 cut(s) 42, 87, 180, 187, 190, 219, 358, 582
AclI AACGTT 1 cut(s) 563
AclWI GGATC 1 cut(s) 904
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 2 cut(s) 114, 506
AfiI CCNNNNNNNGG 2 cut(s) 267, 342
AgsI TTSAA 5 cut(s) 299, 468, 577, 590, 599
Alw21I GWGCWC 2 cut(s) 962, 1058
Alw26I GTCTC 2 cut(s) 407, 504
AlwI GGATC 1 cut(s) 904
AoxI GGCC 3 cut(s) 151, 302, 579
ApeKI GCWGC 2 cut(s) 362, 372
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 682
AspLEI GCGC 3 cut(s) 362, 372, 642
AspS9I GGNCC 2 cut(s) 716, 800
AsuC2I CCSGG 2 cut(s) 337, 344
AsuHPI GGTGA 2 cut(s) 532, 954
AvaII GGWCC 2 cut(s) 716, 800
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 962, 1058
BbvI GCAGC 2 cut(s) 374, 384
BccI CCATC 4 cut(s) 191, 263, 392, 469
BceAI ACGGC 2 cut(s) 158, 317
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcnI CCSGG 2 cut(s) 337, 344
BcoDI GTCTC 2 cut(s) 407, 504
BfaI CTAG 3 cut(s) 653, 665, 849
BfmI CTRYAG 1 cut(s) 819
BisI GCNGC 7 cut(s) 180, 190, 220, 358, 363, 373, 582
BlsI GCNGC 7 cut(s) 181, 191, 221, 359, 364, 374, 583
Bme1390I CCNGG 2 cut(s) 337, 344
Bme18I GGWCC 2 cut(s) 716, 800
BmgT120I GGNCC 2 cut(s) 716, 800
BmiI GGNNCC 2 cut(s) 341, 349
BmrFI CCNGG 2 cut(s) 337, 344
BmsI GCATC 2 cut(s) 206, 894
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 2 cut(s) 306, 669
BpuEI CTTGAG 2 cut(s) 50, 427
BpuMI CCSGG 2 cut(s) 337, 344
BsaBI GATNNNNATC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 343, 554, 953
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 342
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 261, 430, 719
Bse3DI GCAATG 2 cut(s) 972, 1050
Bse8I GATNNNNATC 1 cut(s) 527
BseDI CCNNGG 3 cut(s) 343, 554, 953
BseGI GGATG 5 cut(s) 183, 541, 909, 987, 1032
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 2 cut(s) 267, 342
BseMI GCAATG 2 cut(s) 972, 1050
BseNI ACTGG 3 cut(s) 261, 430, 719
BseRI GAGGAG 3 cut(s) 43, 53, 134
BseXI GCAGC 2 cut(s) 374, 384
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 3 cut(s) 153, 304, 581
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 962, 1058
BsiSI CCGG 4 cut(s) 159, 288, 336, 343
BslFI GGGAC 2 cut(s) 80, 998
BslI CCNNNNNNNGG 2 cut(s) 267, 342
BsmAI GTCTC 2 cut(s) 407, 504
BsmFI GGGAC 2 cut(s) 80, 998
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 3 cut(s) 153, 304, 581
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 962, 1058
Bsp143I GATC 6 cut(s) 277, 352, 455, 499, 646, 896
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 8 cut(s) 42, 87, 180, 187, 190, 219, 358, 582
BspANI GGCC 3 cut(s) 153, 304, 581
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 2 cut(s) 341, 349
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 1 cut(s) 904
BspQI GCTCTTC 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 972, 1050
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 3 cut(s) 261, 430, 719
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 343, 554, 953
BssMI GATC 6 cut(s) 277, 352, 455, 499, 646, 896
BssT1I CCWWGG 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 860
Bst6I CTCTTC 3 cut(s) 14, 31, 1026
BstC8I GCNNGC 1 cut(s) 909
BstDEI CTNAG 2 cut(s) 306, 669
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 5 cut(s) 183, 541, 909, 987, 1032
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 3 cut(s) 362, 372, 642
BstKTI GATC 6 cut(s) 280, 355, 458, 502, 649, 899
BstMAI GTCTC 2 cut(s) 407, 504
BstMBI GATC 6 cut(s) 277, 352, 455, 499, 646, 896
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 4 cut(s) 67, 179, 301, 839
BstNSI RCATGY 1 cut(s) 1054
BstSCI CCNGG 2 cut(s) 335, 342
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 374, 384
BstV2I GAAGAC 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 797
BsuRI GGCC 3 cut(s) 153, 304, 581
BtgI CCRYGG 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 2
BtsCI GGATG 5 cut(s) 183, 541, 909, 987, 1032
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 2 cut(s) 726, 984
Cac8I GCNNGC 1 cut(s) 909
CciI TCATGA 1 cut(s) 925
CfoI GCGC 3 cut(s) 362, 372, 642
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 716, 800
Csp6I GTAC 2 cut(s) 113, 505
CviAII CATG 8 cut(s) 367, 555, 706, 791, 900, 926, 1040, 1051
CviQI GTAC 2 cut(s) 113, 505
DdeI CTNAG 2 cut(s) 306, 669
DpnI GATC 6 cut(s) 279, 354, 457, 501, 648, 898
DpnII GATC 6 cut(s) 277, 352, 455, 499, 646, 896
Eam1104I CTCTTC 3 cut(s) 14, 31, 1026
EarI CTCTTC 3 cut(s) 14, 31, 1026
EciI GGCGGA 2 cut(s) 76, 176
Eco130I CCWWGG 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 716, 800
Eco57I CTGAAG 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 8 cut(s) 370, 558, 709, 794, 903, 929, 1043, 1054
FaqI GGGAC 2 cut(s) 80, 998
FatI CATG 8 cut(s) 366, 554, 705, 790, 899, 925, 1039, 1050
Fnu4HI GCNGC 7 cut(s) 180, 190, 220, 358, 363, 373, 582
FokI GGATG 5 cut(s) 170, 548, 916, 974, 1039
Fsp4HI GCNGC 7 cut(s) 180, 190, 220, 358, 363, 373, 582
FspBI CTAG 3 cut(s) 653, 665, 849
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 3 cut(s) 361, 371, 641
GluI GCNGC 7 cut(s) 180, 190, 220, 358, 363, 373, 582
GsuI CTGGAG 1 cut(s) 244
HaeIII GGCC 3 cut(s) 153, 304, 581
HapII CCGG 4 cut(s) 159, 288, 336, 343
HhaI GCGC 3 cut(s) 362, 372, 642
Hin1II CATG 8 cut(s) 370, 558, 709, 794, 903, 929, 1043, 1054
Hin6I GCGC 3 cut(s) 360, 370, 640
HinP1I GCGC 3 cut(s) 360, 370, 640
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 464, 683
HpaII CCGG 4 cut(s) 159, 288, 336, 343
HphI GGTGA 2 cut(s) 532, 954
Hpy188I TCNGA 9 cut(s) 215, 229, 270, 326, 391, 489, 768, 896, 1026
Hpy188III TCNNGA 6 cut(s) 195, 406, 687, 759, 926, 991
Hpy99I CGWCG 2 cut(s) 179, 326
HpyAV CCTTC 2 cut(s) 396, 560
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 6 cut(s) 245, 705, 821, 977, 1011, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 179, 301, 839
HpyF3I CTNAG 2 cut(s) 306, 669
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 8 cut(s) 370, 558, 709, 794, 903, 929, 1043, 1054
HspAI GCGC 3 cut(s) 360, 370, 640
Kzo9I GATC 6 cut(s) 277, 352, 455, 499, 646, 896
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 4 cut(s) 66, 197, 347, 1061
Lsp1109I GCAGC 2 cut(s) 374, 384
LweI GCATC 2 cut(s) 206, 894
MaeI CTAG 3 cut(s) 653, 665, 849
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 886, 947
MalI GATC 6 cut(s) 279, 354, 457, 501, 648, 898
MbiI CCGCTC 1 cut(s) 192
MboI GATC 6 cut(s) 277, 352, 455, 499, 646, 896
MboII GAAGA 7 cut(s) 18, 118, 160, 484, 721, 893, 1013
MhlI GDGCHC 2 cut(s) 962, 1058
MluCI AATT 1 cut(s) 327
MmeI TCCRAC 5 cut(s) 304, 393, 414, 546, 1091
MroXI GAANNNNTTC 1 cut(s) 682
MseI TTAA 2 cut(s) 332, 873
MslI CAYNNNNRTG 2 cut(s) 795, 977
MspI CCGG 4 cut(s) 159, 288, 336, 343
MspR9I CCNGG 2 cut(s) 337, 344
Mva1269I GAATGC 1 cut(s) 245
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 4 cut(s) 67, 179, 301, 839
NciI CCSGG 2 cut(s) 337, 344
NcoI CCATGG 1 cut(s) 554
NdeII GATC 6 cut(s) 277, 352, 455, 499, 646, 896
NlaIII CATG 8 cut(s) 370, 558, 709, 794, 903, 929, 1043, 1054
NlaIV GGNNCC 2 cut(s) 341, 349
NmuCI GTSAC 2 cut(s) 886, 947
NsbI TGCGCA 1 cut(s) 371
NspI RCATGY 1 cut(s) 1054
PagI TCATGA 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 1026
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 682
PfeI GAWTC 2 cut(s) 464, 683
PkrI GCNGC 7 cut(s) 181, 191, 221, 359, 364, 374, 583
Ple19I CGATCG 1 cut(s) 355
Psp1406I AACGTT 1 cut(s) 563
PspN4I GGNNCC 2 cut(s) 341, 349
PspPI GGNCC 2 cut(s) 716, 800
PstI CTGCAG 1 cut(s) 823
PvuI CGATCG 1 cut(s) 355
RsaI GTAC 2 cut(s) 114, 506
RsaNI GTAC 2 cut(s) 113, 505
RseI CAYNNNNRTG 2 cut(s) 795, 977
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 2 cut(s) 332, 873
SatI GCNGC 7 cut(s) 180, 190, 220, 358, 363, 373, 582
Sau3AI GATC 6 cut(s) 277, 352, 455, 499, 646, 896
Sau96I GGNCC 2 cut(s) 716, 800
ScrFI CCNGG 2 cut(s) 337, 344
SduI GDGCHC 2 cut(s) 962, 1058
SfaNI GCATC 2 cut(s) 206, 894
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 2 cut(s) 716, 800
SmiMI CAYNNNNRTG 2 cut(s) 795, 977
SmlI CTYRAG 2 cut(s) 65, 406
SmoI CTYRAG 2 cut(s) 65, 406
Sse9I AATT 1 cut(s) 327
SsiI CCGC 8 cut(s) 42, 87, 180, 187, 190, 219, 358, 582
SspI AATATT 1 cut(s) 631
SspMI CTAG 3 cut(s) 653, 665, 849
StyD4I CCNGG 2 cut(s) 335, 342
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 1 cut(s) 566
TaqI TCGA 3 cut(s) 276, 458, 649
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 504
TauI GCSGC 5 cut(s) 182, 192, 222, 360, 584
TfiI GAWTC 2 cut(s) 464, 683
Tru1I TTAA 2 cut(s) 332, 873
Tru9I TTAA 2 cut(s) 332, 873
TscAI CASTG 2 cut(s) 726, 984
TseFI GTSAC 2 cut(s) 886, 947
TseI GCWGC 2 cut(s) 362, 372
Tsp45I GTSAC 2 cut(s) 886, 947
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 2 cut(s) 726, 984
VpaK11BI GGWCC 2 cut(s) 716, 800
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 682
XspI CTAG 3 cut(s) 653, 665, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.