Rh6CG514300

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011407
Physical Location & Seq
Reverse (-)
67261164 .. 67264058
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG514300.1

Sequence Viewer

Length: 1098 bp
ATGCCACTCTTCTCTCACCGCCAGTCTTCCCCTCTCCCCACCACCTCCTACTCCTCCAAGCTCCTCAAGCCCCTGAAACCCACCTCCGCCTCCGTCCCCACTCGCACTCCCCTGCCCATTATCGTCTTTTCCCTCATCTCCCTCCTCATCGGCCTCGCCGGAACAATCTTCGCCGTCGCCGCCCTCCGCCGCTCCACACCCCTCCCCGTTTTCCGATGCGGAAAATCCGAAGATACTTTCCGAGCATTCTACTCCCTCTCCAATTCTCGCAACCTCAACCACAATGCCGGGTTGATTGAACGGCCTAAGCTTCTCGGCTTCGTCGGAATTCAGACCGGGTTCGGGGCAGCTGATCGCCGCGCCGCCCTGCGCACCACTTGGTTTCCTTCCGACCCAGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCTTTTAGGTTTGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATAAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCGGCGTTTCAACAGTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATTTATCTGCGCCCAGATCGACTAGCAACACTTCTAGCTAAGGAGAGAACAGATTCACGAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATAACTGACCCAAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGGAATGACTTTCAACATGCCTATGCTCCTATTTATGTTCTATCTGCAGAGGTGGTTGTGTCATTGGCAACTGCTAAAAATAACAGTTTGAGAATGTTTAACAATGAAGATGTCACAATTGGATCATGGACGCTTGCTATGAATGTCCATCATGAGGATAATCGGTTTTTATGTGACCCTCGGTGCTCACCTAGATCCATTGCAGTGTGGGACATCCCAAAATGTTCAGGTTTATGCAATCCAGCTATTCGGATGAAAGAGCTTCATGCAATGAGTATGTGCTCCAAAAGTCCAACCCTGCTCCCTACTGATGCTGATGACAGATAG

Protein Analysis

365

Amino Acids

41.03

Weight (kDa)

9.26

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 118 - 311 1.1e-47 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 360
AciI CCGC 9 cut(s) 19, 87, 180, 187, 190, 219, 358, 363, 581
AclI AACGTT 1 cut(s) 563
AclWI GGATC 2 cut(s) 901, 960
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 2 cut(s) 342, 925
AgsI TTSAA 5 cut(s) 299, 577, 590, 599, 785
Alw21I GWGCWC 2 cut(s) 959, 1055
Alw26I GTCTC 2 cut(s) 407, 504
AlwI GGATC 2 cut(s) 901, 960
AoxI GGCC 2 cut(s) 151, 302
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 682
AspLEI GCGC 3 cut(s) 362, 372, 642
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 2 cut(s) 289, 337
AsuHPI GGTGA 3 cut(s) 8, 532, 951
AvaII GGWCC 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 959, 1055
BbvI GCAGC 1 cut(s) 359
BccI CCATC 3 cut(s) 392, 469, 927
BceAI ACGGC 2 cut(s) 158, 317
BcnI CCSGG 2 cut(s) 289, 337
BcoDI GTCTC 2 cut(s) 407, 504
BfaI CTAG 3 cut(s) 653, 665, 963
BfmI CTRYAG 1 cut(s) 816
BisI GCNGC 6 cut(s) 180, 190, 348, 358, 363, 582
BlsI GCNGC 6 cut(s) 181, 191, 349, 359, 364, 583
Bme1390I CCNGG 2 cut(s) 289, 337
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmrFI CCNGG 2 cut(s) 289, 337
BmsI GCATC 3 cut(s) 206, 454, 1072
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 306, 669
BpuEI CTTGAG 2 cut(s) 50, 427
BpuMI CCSGG 2 cut(s) 289, 337
BsaBI GATNNNNATC 2 cut(s) 527, 633
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 554, 950
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 925
Bse1I ACTGG 3 cut(s) 22, 430, 719
Bse3DI GCAATG 2 cut(s) 969, 1047
Bse8I GATNNNNATC 2 cut(s) 527, 633
BseDI CCNNGG 2 cut(s) 554, 950
BseGI GGATG 3 cut(s) 541, 984, 1029
BseJI GATNNNNATC 2 cut(s) 527, 633
BseLI CCNNNNNNNGG 2 cut(s) 342, 925
BseMI GCAATG 2 cut(s) 969, 1047
BseNI ACTGG 3 cut(s) 22, 430, 719
BseRI GAGGAG 3 cut(s) 43, 53, 134
BseXI GCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 153, 304
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 959, 1055
BsiSI CCGG 3 cut(s) 159, 288, 336
BslFI GGGAC 2 cut(s) 80, 995
BslI CCNNNNNNNGG 2 cut(s) 342, 925
BsmAI GTCTC 2 cut(s) 407, 504
BsmFI GGGAC 2 cut(s) 80, 995
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 2 cut(s) 153, 304
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 959, 1055
Bsp143I GATC 5 cut(s) 352, 455, 646, 893, 965
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 9 cut(s) 19, 87, 180, 187, 190, 219, 358, 363, 581
BspANI GGCC 2 cut(s) 153, 304
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 922
BspMAI CTGCAG 1 cut(s) 820
BspPI GGATC 2 cut(s) 901, 960
BspTNI GGTCTC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 969, 1047
BsrI ACTGG 3 cut(s) 22, 430, 719
BssECI CCNNGG 2 cut(s) 554, 950
BssMI GATC 5 cut(s) 352, 455, 646, 893, 965
BssT1I CCWWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 594, 857
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 906
BstDEI CTNAG 2 cut(s) 306, 669
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 3 cut(s) 541, 984, 1029
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 3 cut(s) 362, 372, 642
BstKTI GATC 5 cut(s) 355, 458, 649, 896, 968
BstMAI GTCTC 2 cut(s) 407, 504
BstMBI GATC 5 cut(s) 352, 455, 646, 893, 965
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 2 cut(s) 67, 179
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 287, 335
BstSFI CTRYAG 1 cut(s) 816
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 965
BstYI RGATCY 1 cut(s) 965
BsuRI GGCC 2 cut(s) 153, 304
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 3 cut(s) 541, 984, 1029
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 2 cut(s) 726, 981
Cac8I GCNNGC 1 cut(s) 906
CciI TCATGA 1 cut(s) 922
CfoI GCGC 3 cut(s) 362, 372, 642
Cfr13I GGNCC 1 cut(s) 716
CseI GACGC 1 cut(s) 910
Csp6I GTAC 1 cut(s) 505
CviAII CATG 6 cut(s) 555, 706, 788, 897, 923, 1037
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 2 cut(s) 306, 669
DpnI GATC 5 cut(s) 354, 457, 648, 895, 967
DpnII GATC 5 cut(s) 352, 455, 646, 893, 965
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 2 cut(s) 76, 176
Eco130I CCWWGG 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 6 cut(s) 558, 709, 791, 900, 926, 1040
FaqI GGGAC 2 cut(s) 80, 995
FatI CATG 6 cut(s) 554, 705, 787, 896, 922, 1036
Fnu4HI GCNGC 6 cut(s) 180, 190, 348, 358, 363, 582
FokI GGATG 3 cut(s) 548, 971, 1036
Fsp4HI GCNGC 6 cut(s) 180, 190, 348, 358, 363, 582
FspBI CTAG 3 cut(s) 653, 665, 963
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 3 cut(s) 361, 371, 641
GluI GCNGC 6 cut(s) 180, 190, 348, 358, 363, 582
HaeIII GGCC 2 cut(s) 153, 304
HapII CCGG 3 cut(s) 159, 288, 336
HgaI GACGC 1 cut(s) 910
HhaI GCGC 3 cut(s) 362, 372, 642
Hin1II CATG 6 cut(s) 558, 709, 791, 900, 926, 1040
Hin6I GCGC 3 cut(s) 360, 370, 640
HinP1I GCGC 3 cut(s) 360, 370, 640
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 683
HpaII CCGG 3 cut(s) 159, 288, 336
HphI GGTGA 3 cut(s) 8, 532, 951
Hpy188I TCNGA 9 cut(s) 215, 229, 242, 326, 333, 391, 489, 768, 1023
Hpy188III TCNNGA 4 cut(s) 406, 687, 759, 923
Hpy99I CGWCG 2 cut(s) 179, 326
HpyAV CCTTC 2 cut(s) 396, 560
HpyCH4III ACNGT 2 cut(s) 594, 857
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 6 cut(s) 467, 705, 818, 974, 1008, 1040
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 179
HpyF3I CTNAG 2 cut(s) 306, 669
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 6 cut(s) 558, 709, 791, 900, 926, 1040
HspAI GCGC 3 cut(s) 360, 370, 640
Kzo9I GATC 5 cut(s) 352, 455, 646, 893, 965
LmnI GCTCC 5 cut(s) 66, 197, 802, 1058, 1077
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 3 cut(s) 206, 454, 1072
MaeI CTAG 3 cut(s) 653, 665, 963
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 883, 944
MalI GATC 5 cut(s) 354, 457, 648, 895, 967
MbiI CCGCTC 1 cut(s) 192
MboI GATC 5 cut(s) 352, 455, 646, 893, 965
MboII GAAGA 6 cut(s) 18, 160, 242, 484, 721, 890
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 2 cut(s) 959, 1055
MluCI AATT 3 cut(s) 262, 327, 888
MmeI TCCRAC 5 cut(s) 304, 393, 414, 546, 1088
MroXI GAANNNNTTC 1 cut(s) 682
MseI TTAA 1 cut(s) 870
MslI CAYNNNNRTG 2 cut(s) 792, 974
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 3 cut(s) 159, 288, 336
MspR9I CCNGG 2 cut(s) 289, 337
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 245
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 67, 179
NciI CCSGG 2 cut(s) 289, 337
NcoI CCATGG 1 cut(s) 554
NdeII GATC 5 cut(s) 352, 455, 646, 893, 965
NlaIII CATG 6 cut(s) 558, 709, 791, 900, 926, 1040
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 883, 944
NsbI TGCGCA 1 cut(s) 371
NspI RCATGY 1 cut(s) 791
PagI TCATGA 1 cut(s) 922
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 683
PkrI GCNGC 6 cut(s) 181, 191, 349, 359, 364, 583
Ple19I CGATCG 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 563
PspPI GGNCC 1 cut(s) 716
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 1 cut(s) 965
PvuI CGATCG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 2 cut(s) 792, 974
SaqAI TTAA 1 cut(s) 870
SatI GCNGC 6 cut(s) 180, 190, 348, 358, 363, 582
Sau3AI GATC 5 cut(s) 352, 455, 646, 893, 965
Sau96I GGNCC 1 cut(s) 716
ScrFI CCNGG 2 cut(s) 289, 337
SduI GDGCHC 2 cut(s) 959, 1055
SfaNI GCATC 3 cut(s) 206, 454, 1072
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 792, 974
SmlI CTYRAG 2 cut(s) 65, 406
SmoI CTYRAG 2 cut(s) 65, 406
Sse9I AATT 3 cut(s) 262, 327, 888
SsiI CCGC 9 cut(s) 19, 87, 180, 187, 190, 219, 358, 363, 581
SspMI CTAG 3 cut(s) 653, 665, 963
StyD4I CCNGG 2 cut(s) 287, 335
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 2 cut(s) 594, 857
TaiI ACGT 1 cut(s) 566
TaqI TCGA 2 cut(s) 458, 649
TasI AATT 3 cut(s) 262, 327, 888
TatI WGTACW 1 cut(s) 504
TauI GCSGC 5 cut(s) 182, 192, 360, 365, 584
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 1 cut(s) 870
Tru9I TTAA 1 cut(s) 870
TscAI CASTG 2 cut(s) 726, 981
TseFI GTSAC 2 cut(s) 883, 944
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 883, 944
TspDTI ATGAA 7 cut(s) 552, 722, 755, 891, 926, 1025, 1040
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 726, 981
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmnI GAANNNNTTC 1 cut(s) 682
XspI CTAG 3 cut(s) 653, 665, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.