Rroxscaffold_7G00158160

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011407
Physical Location & Seq
Forward (+)
1691466 .. 1694927
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158160.1

Sequence Viewer

Length: 1104 bp
ATGCCACTCTTCTCTCACCGCCAGTCTTCCCCTCTCCCCACCACCACCTCCTACTCCTCCAAGCTCCTCAAGCCCCTGAAACCCACCTCCGCCTCCGTCCCCACTCGCACTCCCCTGCCCATTATCGTCTTTTCCCTCATCTCCCTCCTCATCGGCCTCGCCGGAACAATCTTCGCCGTCGCCGCCCTCCGCCGCTCCACATCCCTCCCCGTTTTCCGATGCGGCAAATCCGAAGATACTTTCCGAGCATTCTACTCCCTCTCCAATTCTCGCAACCTCAACCACAATGCCGGGTTGATTGAACGGCCTAAGCTTCTCGGCTTCGTCGGAATTCAGACCGGGTTCGGGGCAGCTGATCGCCGCTCCGCCCTGCGCACCACTTGGTTTCCTTCCGACCCAGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCTTTTAGGTTTGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATAAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCGGCGTTTCAACAGTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATTTATCTGCGCCCAGATCGACTAGCAACACTTCTAGCTAAGGAGAGAACAGATTCACAAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATAACTGACCCAAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGGAATGAATACTTTCAACATGCCTATGCTCCTATTTATGTTCTATCTGCAGAGGTGGTTGTGTCATTGGCAACTGCTAAAAATAACAGTTTGAGAATGTTTAACAATGAAGATGTCACAATTGGATCATGGATGCTTGCTATGAATGTCCATCATGAGGATAATCGGTTTTTATGTGACCCTCGGTGCTCACCTAGATCCATTGCAGTGTGGGACATCCCGAAATGTTCAGGTTTATGCAATCCAGCTATTCAGATGAAAGAGCTTCATGCAATGAGTATGTGCTCCAAAAGTCCAACCCTGCTCCCTACTGATGCTGATGACAGATAG

Protein Analysis

367

Amino Acids

41.29

Weight (kDa)

9.1

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 119 - 313 2.1e-51 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 374
AccBSI CCGCTC 2 cut(s) 195, 363
AciI CCGC 9 cut(s) 19, 90, 183, 190, 193, 222, 361, 366, 584
AclI AACGTT 1 cut(s) 566
AclWI GGATC 2 cut(s) 907, 966
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 473
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 345, 931
AgsI TTSAA 5 cut(s) 302, 580, 593, 602, 791
Alw21I GWGCWC 2 cut(s) 965, 1061
Alw26I GTCTC 2 cut(s) 410, 507
AlwI GGATC 2 cut(s) 907, 966
AoxI GGCC 2 cut(s) 154, 305
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 330
Asp700I GAANNNNTTC 2 cut(s) 685, 786
AspLEI GCGC 2 cut(s) 375, 645
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 2 cut(s) 292, 340
AsuHPI GGTGA 3 cut(s) 8, 535, 957
AvaII GGWCC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 965, 1061
BbvI GCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 395, 472, 933
BceAI ACGGC 2 cut(s) 161, 320
BcnI CCSGG 2 cut(s) 292, 340
BcoDI GTCTC 2 cut(s) 410, 507
BfaI CTAG 3 cut(s) 656, 668, 969
BfmI CTRYAG 1 cut(s) 822
BisI GCNGC 6 cut(s) 183, 193, 223, 351, 361, 585
BlsI GCNGC 6 cut(s) 184, 194, 224, 352, 362, 586
Bme1390I CCNGG 2 cut(s) 292, 340
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 719
BmrFI CCNGG 2 cut(s) 292, 340
BmsI GCATC 4 cut(s) 209, 457, 897, 1078
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 309, 672
BpuEI CTTGAG 2 cut(s) 53, 430
BpuMI CCSGG 2 cut(s) 292, 340
BsaBI GATNNNNATC 2 cut(s) 530, 636
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 557, 956
BsaXI ACNNNNNCTCC 4 cut(s) 94, 124, 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 931
Bse1I ACTGG 3 cut(s) 22, 433, 722
Bse3DI GCAATG 2 cut(s) 975, 1053
Bse8I GATNNNNATC 2 cut(s) 530, 636
BseDI CCNNGG 2 cut(s) 557, 956
BseGI GGATG 4 cut(s) 200, 544, 912, 990
BseJI GATNNNNATC 2 cut(s) 530, 636
BseLI CCNNNNNNNGG 2 cut(s) 345, 931
BseMI GCAATG 2 cut(s) 975, 1053
BseNI ACTGG 3 cut(s) 22, 433, 722
BseRI GAGGAG 3 cut(s) 46, 56, 137
BseXI GCAGC 1 cut(s) 362
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 2 cut(s) 156, 307
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 2 cut(s) 965, 1061
BsiSI CCGG 3 cut(s) 162, 291, 339
BslFI GGGAC 2 cut(s) 83, 1001
BslI CCNNNNNNNGG 2 cut(s) 345, 931
BsmAI GTCTC 2 cut(s) 410, 507
BsmFI GGGAC 2 cut(s) 83, 1001
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 2 cut(s) 156, 307
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 965, 1061
Bsp143I GATC 5 cut(s) 355, 458, 649, 899, 971
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 9 cut(s) 19, 90, 183, 190, 193, 222, 361, 366, 584
BspANI GGCC 2 cut(s) 156, 307
BspHI TCATGA 1 cut(s) 928
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 2 cut(s) 907, 966
BspTNI GGTCTC 1 cut(s) 410
BsrBI CCGCTC 2 cut(s) 195, 363
BsrDI GCAATG 2 cut(s) 975, 1053
BsrI ACTGG 3 cut(s) 22, 433, 722
BssECI CCNNGG 2 cut(s) 557, 956
BssMI GATC 5 cut(s) 355, 458, 649, 899, 971
BssT1I CCWWGG 1 cut(s) 557
Bst4CI ACNGT 2 cut(s) 597, 863
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 912
BstDEI CTNAG 2 cut(s) 309, 672
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 4 cut(s) 200, 544, 912, 990
BstHHI GCGC 2 cut(s) 375, 645
BstKTI GATC 5 cut(s) 358, 461, 652, 902, 974
BstMAI GTCTC 2 cut(s) 410, 507
BstMBI GATC 5 cut(s) 355, 458, 649, 899, 971
BstMCI CGRYCG 1 cut(s) 461
BstMWI GCNNNNNNNGC 2 cut(s) 70, 182
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 290, 338
BstSFI CTRYAG 1 cut(s) 822
BstV1I GCAGC 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 971
BstYI RGATCY 1 cut(s) 971
BsuRI GGCC 2 cut(s) 156, 307
BtgI CCRYGG 1 cut(s) 557
BtsCI GGATG 4 cut(s) 200, 544, 912, 990
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 2 cut(s) 729, 987
Cac8I GCNNGC 1 cut(s) 912
CciI TCATGA 1 cut(s) 928
CfoI GCGC 2 cut(s) 375, 645
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 1 cut(s) 508
CviAII CATG 6 cut(s) 558, 709, 794, 903, 929, 1043
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 2 cut(s) 309, 672
DpnI GATC 5 cut(s) 357, 460, 651, 901, 973
DpnII GATC 5 cut(s) 355, 458, 649, 899, 971
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 3 cut(s) 79, 179, 355
Eco130I CCWWGG 1 cut(s) 557
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 6 cut(s) 561, 712, 797, 906, 932, 1046
FaqI GGGAC 2 cut(s) 83, 1001
FatI CATG 6 cut(s) 557, 708, 793, 902, 928, 1042
Fnu4HI GCNGC 6 cut(s) 183, 193, 223, 351, 361, 585
FokI GGATG 4 cut(s) 187, 551, 919, 977
Fsp4HI GCNGC 6 cut(s) 183, 193, 223, 351, 361, 585
FspBI CTAG 3 cut(s) 656, 668, 969
FspI TGCGCA 1 cut(s) 374
GlaI GCGC 2 cut(s) 374, 644
GluI GCNGC 6 cut(s) 183, 193, 223, 351, 361, 585
HaeIII GGCC 2 cut(s) 156, 307
HapII CCGG 3 cut(s) 162, 291, 339
HhaI GCGC 2 cut(s) 375, 645
Hin1II CATG 6 cut(s) 561, 712, 797, 906, 932, 1046
Hin6I GCGC 2 cut(s) 373, 643
HinP1I GCGC 2 cut(s) 373, 643
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 686
HpaII CCGG 3 cut(s) 162, 291, 339
HphI GGTGA 3 cut(s) 8, 535, 957
Hpy188I TCNGA 9 cut(s) 218, 232, 245, 329, 336, 394, 492, 771, 1029
Hpy188III TCNNGA 4 cut(s) 409, 762, 929, 994
Hpy99I CGWCG 2 cut(s) 182, 329
HpyAV CCTTC 2 cut(s) 399, 563
HpyCH4III ACNGT 2 cut(s) 597, 863
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 6 cut(s) 470, 708, 824, 980, 1014, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 182
HpyF3I CTNAG 2 cut(s) 309, 672
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 6 cut(s) 561, 712, 797, 906, 932, 1046
HspAI GCGC 2 cut(s) 373, 643
Kzo9I GATC 5 cut(s) 355, 458, 649, 899, 971
LmnI GCTCC 6 cut(s) 69, 200, 368, 808, 1064, 1083
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 4 cut(s) 209, 457, 897, 1078
MaeI CTAG 3 cut(s) 656, 668, 969
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 2 cut(s) 889, 950
MalI GATC 5 cut(s) 357, 460, 651, 901, 973
MbiI CCGCTC 2 cut(s) 195, 363
MboI GATC 5 cut(s) 355, 458, 649, 899, 971
MboII GAAGA 6 cut(s) 18, 163, 245, 487, 724, 896
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 2 cut(s) 965, 1061
MluCI AATT 3 cut(s) 265, 330, 894
MmeI TCCRAC 5 cut(s) 307, 396, 417, 549, 1094
MroXI GAANNNNTTC 2 cut(s) 685, 786
MseI TTAA 1 cut(s) 876
MslI CAYNNNNRTG 2 cut(s) 798, 980
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 3 cut(s) 162, 291, 339
MspR9I CCNGG 2 cut(s) 292, 340
MunI CAATTG 1 cut(s) 894
Mva1269I GAATGC 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 70, 182
NciI CCSGG 2 cut(s) 292, 340
NcoI CCATGG 1 cut(s) 557
NdeII GATC 5 cut(s) 355, 458, 649, 899, 971
NlaIII CATG 6 cut(s) 561, 712, 797, 906, 932, 1046
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 2 cut(s) 889, 950
NsbI TGCGCA 1 cut(s) 374
NspI RCATGY 1 cut(s) 797
PagI TCATGA 1 cut(s) 928
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 2 cut(s) 685, 786
PfeI GAWTC 1 cut(s) 686
PkrI GCNGC 6 cut(s) 184, 194, 224, 352, 362, 586
Ple19I CGATCG 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 566
PspPI GGNCC 1 cut(s) 719
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 1 cut(s) 971
PvuI CGATCG 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 798, 980
SaqAI TTAA 1 cut(s) 876
SatI GCNGC 6 cut(s) 183, 193, 223, 351, 361, 585
Sau3AI GATC 5 cut(s) 355, 458, 649, 899, 971
Sau96I GGNCC 1 cut(s) 719
ScrFI CCNGG 2 cut(s) 292, 340
SduI GDGCHC 2 cut(s) 965, 1061
SfaNI GCATC 4 cut(s) 209, 457, 897, 1078
SfcI CTRYAG 1 cut(s) 822
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 2 cut(s) 798, 980
SmlI CTYRAG 2 cut(s) 68, 409
SmoI CTYRAG 2 cut(s) 68, 409
Sse9I AATT 3 cut(s) 265, 330, 894
SsiI CCGC 9 cut(s) 19, 90, 183, 190, 193, 222, 361, 366, 584
SspMI CTAG 3 cut(s) 656, 668, 969
StyD4I CCNGG 2 cut(s) 290, 338
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 2 cut(s) 597, 863
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 461, 652
TasI AATT 3 cut(s) 265, 330, 894
TatI WGTACW 1 cut(s) 507
TauI GCSGC 5 cut(s) 185, 195, 225, 363, 587
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 1 cut(s) 876
Tru9I TTAA 1 cut(s) 876
TscAI CASTG 2 cut(s) 729, 987
TseFI GTSAC 2 cut(s) 889, 950
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 889, 950
TspDTI ATGAA 8 cut(s) 555, 725, 758, 795, 897, 932, 1031, 1046
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 729, 987
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 1 cut(s) 330
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XmnI GAANNNNTTC 2 cut(s) 685, 786
XspI CTAG 3 cut(s) 656, 668, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.