Rorug06G0384200

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011407
Physical Location & Seq
Reverse (-)
52978967 .. 52979651
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384200.1

Sequence Viewer

Length: 375 bp
ATGGCCACCATCGCCAACTCTCTCATTGTCATTGTCCTCTTCAGTCTCATTAGCCATGGGTTATGCGTTACTTGCACCAATAAGAACATTCAGATCGTTACGACACGGAGTGGGAAGGTGGTTCACGGCAAACCCGAATGGAACGTGGTGGTGACTAACACCTGCAAGTGCTCTCAAGCCATGATTAAACTGAGTTGCAAGGGATTTCAGACTGTAGAGCCGGTCAGTTCTTCGATCCTATCAGAGATAGGTGTTGACACATATCAACTCATCAACGGCGATAGCTTGGCTCCTGGTGCTTTTGTCAAGTTCTCCTATGCTTGGGATTCTCCTTCCAGTATATTGCCTGCTGACTCTCTTTCTATTCCTTGCTAA

Protein Analysis

124

Amino Acids

13.21

Weight (kDa)

7.59

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 27 - 111 1.2e-24 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 25
AdeI CACNNNGTG 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 321
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 229
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 173
BccI CCATC 1 cut(s) 17
BceAI ACGGC 2 cut(s) 142, 292
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 336
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 50
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 93, 234
Bsp19I CCATGG 1 cut(s) 55
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 93, 234
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 55
BstKTI GATC 2 cut(s) 96, 237
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 93, 234
BstMWI GCNNNNNNNGC 3 cut(s) 11, 72, 296
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 213
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 220
CviAII CATG 2 cut(s) 56, 181
CviJI RGCY 6 cut(s) 5, 54, 179, 220, 285, 290
CviKI_1 RGCY 6 cut(s) 5, 54, 179, 220, 285, 290
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 95, 236
DpnII GATC 2 cut(s) 93, 234
DraIII CACNNNGTG 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 59, 184
FaiI YATR 6 cut(s) 57, 64, 182, 262, 318, 341
FatI CATG 2 cut(s) 55, 180
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 221
Hin1II CATG 2 cut(s) 59, 184
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 326, 353
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 124, 256
Hpy188I TCNGA 3 cut(s) 93, 210, 244
Hpy8I GTNNAC 2 cut(s) 124, 256
HpyAV CCTTC 2 cut(s) 109, 342
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 75, 165, 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 72, 296
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 59, 184
Kzo9I GATC 2 cut(s) 93, 234
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 6 cut(s) 175, 234, 279, 306, 349, 360
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 67, 97, 151
MalI GATC 2 cut(s) 95, 236
MboI GATC 2 cut(s) 93, 234
MboII GAAGA 2 cut(s) 31, 222
MhlI GDGCHC 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 1 cut(s) 47
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 11, 72, 296
NcoI CCATGG 1 cut(s) 55
NdeII GATC 2 cut(s) 93, 234
NlaIII CATG 2 cut(s) 59, 184
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 151
PaqCI CACCTGC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 326
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 2 cut(s) 93, 234
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 173
SetI ASST 5 cut(s) 120, 147, 164, 253, 287
SfcI CTRYAG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 233
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.