MD08G1061800.v1.1

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0011407
Physical Location & Seq
Reverse (-)
4888519 .. 4891394
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1061800.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGCCACTCTTTTTCCACCGCCAATCTTCTCTGCCCACCGCCACCGCCACCGCCACCGCCACCTCGCCCTCCTACTCCTCCAAGCTCCTCAAGCCCCTAAAGCCCCATCCTGCCCCTGTCCCCACCCGCACTCCCCTGCCCATTATCGTCTTTTCACTCGTCTCCCTCTTTATCGGCCTCGCAGGAACCATCTTCGCCGTCGCCGCCTTCCGCCGCCCGACCCCCATTCCCATTTTCCGATGCGGAAAATCGGACGACACATTCCGGGGGTTCTACTCTCTGTCGAAGTCTCGGCAGATCGGTGATAAAAATGGTGGCTTGGTTGATCGGCCCAAGCTTCTTGGGTTCGTCGGAATTCAGACCGGGTTTGGCTCGGCCGATCGCCGTGCAGCGTTGCGGAACACTTGGTTTCCTTCCGACCCAGATGGCTTTTTGAGGTTGGAACAGGCCACTGGTTTAGCATTTAGGTTCGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCGGAGCTTCAGAAGGAGATCGATAAGAACAGAGACTTTTTGGTTATTGATAGCAATGAAGAATATTTAAACCTTCCGTGGAAAACGTTGGCATTTTTCAAAGCAGCATTTCAACTTTTCGAAGCAGATTACTATGTCAAAGCCAATGATGACATTTATTTGCGTCCAGATCGACTAGCCATGCTTCTAGCCAAGGAACGAACACATCCACAAACCTACATTGGATGCATGAAGAAAGGACCAGTAGTCACTGACCCTAAAATGAAATGGTATGAGAAATCAGGACATCTAATTGGGAATGAATACTTTCAGCATGCTTTTGGTCCTATTTATGTTCTGTCTGCAGAGGTGGTAGCTTCATTAGCAGTCGCTAGAAATAACAGTTTGAGAATGTTTAGCAATGAGGACGTCACGATTGGATCATGGATGCTTGCTATGAATGTCAATCATGAGGATAATCGGGCATTATGCGACCCTCGTTGCACACTCACATCCATTGCAGTGTGGGACATCCCAAAATGTTCAGGTTTGTGCAACCCAGTCATTAGGCTGAGAGAGCTTCATGCGATGAGAATGTGCTCCAAAAGCCCGACGCTGCCTCCTGATGACAGATAA

Protein Analysis

373

Amino Acids

41.71

Weight (kDa)

9.48

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 127 - 321 4.7e-48 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 915
AclI AACGTT 1 cut(s) 590
AclWI GGATC 1 cut(s) 931
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 912
AgsI TTSAA 2 cut(s) 604, 617
AhdI GACNNNNNGTC 1 cut(s) 749
AluBI AGCT 5 cut(s) 85, 337, 511, 860, 1063
AluI AGCT 5 cut(s) 85, 337, 511, 860, 1063
Alw21I GWGCWC 1 cut(s) 1085
Alw26I GTCTC 3 cut(s) 166, 294, 531
AlwI GGATC 1 cut(s) 931
AoxI GGCC 4 cut(s) 175, 329, 375, 447
ApeKI GCWGC 3 cut(s) 389, 608, 1099
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 810
AspS9I GGNCC 3 cut(s) 330, 743, 827
AsuC2I CCSGG 2 cut(s) 266, 364
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 624
AvaII GGWCC 2 cut(s) 743, 827
Bbv12I GWGCWC 1 cut(s) 1085
BbvI GCAGC 3 cut(s) 401, 620, 1086
BccI CCATC 4 cut(s) 114, 197, 419, 496
BceAI ACGGC 2 cut(s) 182, 369
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BcnI CCSGG 2 cut(s) 266, 364
BcoDI GTCTC 3 cut(s) 166, 294, 531
BfaI CTAG 3 cut(s) 680, 692, 876
BfmI CTRYAG 1 cut(s) 846
BisI GCNGC 5 cut(s) 204, 214, 390, 609, 1100
BlsI GCNGC 5 cut(s) 205, 215, 391, 610, 1101
Bme1390I CCNGG 2 cut(s) 266, 364
Bme18I GGWCC 2 cut(s) 743, 827
BmeRI GACNNNNNGTC 1 cut(s) 749
BmgT120I GGNCC 3 cut(s) 330, 743, 827
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 266, 364
BmrI ACTGGG 1 cut(s) 1037
BmsI GCATC 4 cut(s) 230, 481, 719, 921
BmuI ACTGGG 1 cut(s) 1037
Bpu14I TTCGAA 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 266, 364
Bsa29I ATCGAT 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 912
BsaJI CCNNGG 3 cut(s) 265, 581, 696
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 1087, 1117
Bse1I ACTGG 3 cut(s) 457, 746, 1043
Bse3DI GCAATG 3 cut(s) 565, 910, 999
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 3 cut(s) 265, 581, 696
BseGI GGATG 6 cut(s) 106, 709, 734, 936, 995, 1014
BseMI GCAATG 3 cut(s) 565, 910, 999
BseMII CTCAG 1 cut(s) 1046
BseNI ACTGG 3 cut(s) 457, 746, 1043
BseRI GAGGAG 2 cut(s) 67, 77
BseX3I CGGCCG 1 cut(s) 375
BseXI GCAGC 3 cut(s) 401, 620, 1086
BsgI GTGCAG 1 cut(s) 408
Bsh1285I CGRYCG 3 cut(s) 378, 382, 485
BshFI GGCC 4 cut(s) 177, 331, 377, 449
BshVI ATCGAT 1 cut(s) 525
BsiEI CGRYCG 3 cut(s) 378, 382, 485
BsiHKAI GWGCWC 1 cut(s) 1085
BsiSI CCGG 2 cut(s) 265, 363
BslFI GGGAC 2 cut(s) 104, 1025
BsmAI GTCTC 3 cut(s) 166, 294, 531
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 104, 1025
BsnI GGCC 4 cut(s) 177, 331, 377, 449
Bsp119I TTCGAA 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 1085
Bsp143I GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
BspANI GGCC 4 cut(s) 177, 331, 377, 449
BspCNI CTCAG 1 cut(s) 1047
BspDI ATCGAT 1 cut(s) 525
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 850
BspPI GGATC 1 cut(s) 931
BspT104I TTCGAA 1 cut(s) 624
BsrDI GCAATG 3 cut(s) 565, 910, 999
BsrI ACTGG 3 cut(s) 457, 746, 1043
BssECI CCNNGG 3 cut(s) 265, 581, 696
BssMI GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
BssNI GRCGYC 1 cut(s) 912
BssT1I CCWWGG 1 cut(s) 696
Bst4CI ACNGT 1 cut(s) 887
BstACI GRCGYC 1 cut(s) 912
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 819, 936
BstDEI CTNAG 1 cut(s) 1055
BstDSI CCRYGG 1 cut(s) 581
BstF5I GGATG 6 cut(s) 106, 709, 734, 936, 995, 1014
BstKTI GATC 7 cut(s) 300, 328, 382, 485, 525, 676, 926
BstMAI GTCTC 3 cut(s) 166, 294, 531
BstMBI GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
BstMCI CGRYCG 3 cut(s) 378, 382, 485
BstMWI GCNNNNNNNGC 6 cut(s) 91, 100, 203, 866, 1060, 1089
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 264, 362
BstSFI CTRYAG 1 cut(s) 846
BstV1I GCAGC 3 cut(s) 401, 620, 1086
BstZI CGGCCG 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 525
BsuRI GGCC 4 cut(s) 177, 331, 377, 449
BsuTUI ATCGAT 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 581
BtgZI GCGATG 1 cut(s) 1085
BtsCI GGATG 6 cut(s) 106, 709, 734, 936, 995, 1014
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 3 cut(s) 450, 753, 1011
Cac8I GCNNGC 2 cut(s) 819, 936
CciI TCATGA 1 cut(s) 952
Cfr13I GGNCC 3 cut(s) 330, 743, 827
ClaI ATCGAT 1 cut(s) 525
CseI GACGC 2 cut(s) 656, 1105
CviAII CATG 6 cut(s) 685, 733, 818, 927, 953, 1067
DdeI CTNAG 1 cut(s) 1055
DpnI GATC 7 cut(s) 299, 327, 381, 484, 524, 675, 925
DpnII GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
DraI TTTAAA 1 cut(s) 573
DriI GACNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 1 cut(s) 375
EagI CGGCCG 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 749
EciI GGCGGA 2 cut(s) 200, 521
EclXI CGGCCG 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 743, 827
Eco52I CGGCCG 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 696
EcoT22I ATGCAT 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 696
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 6 cut(s) 688, 736, 821, 930, 956, 1070
FaqI GGGAC 2 cut(s) 104, 1025
FatI CATG 6 cut(s) 684, 732, 817, 926, 952, 1066
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 5 cut(s) 204, 214, 390, 609, 1100
FokI GGATG 6 cut(s) 93, 696, 741, 943, 982, 1001
Fsp4HI GCNGC 5 cut(s) 204, 214, 390, 609, 1100
FspBI CTAG 3 cut(s) 680, 692, 876
GluI GCNGC 5 cut(s) 204, 214, 390, 609, 1100
HaeIII GGCC 4 cut(s) 177, 331, 377, 449
HapII CCGG 2 cut(s) 265, 363
HgaI GACGC 2 cut(s) 656, 1105
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 6 cut(s) 688, 736, 821, 930, 956, 1070
HindIII AAGCTT 1 cut(s) 335
HpaII CCGG 2 cut(s) 265, 363
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 6 cut(s) 239, 253, 353, 360, 418, 516
Hpy188III TCNNGA 5 cut(s) 671, 786, 916, 953, 1106
Hpy99I CGWCG 3 cut(s) 203, 353, 1099
HpyAV CCTTC 4 cut(s) 217, 423, 511, 587
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4IV ACGT 2 cut(s) 590, 912
HpyCH4V TGCA 7 cut(s) 389, 494, 732, 848, 987, 1004, 1038
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 100, 203, 866, 1060, 1089
HpyF3I CTNAG 1 cut(s) 1055
HpySE526I ACGT 2 cut(s) 590, 912
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 6 cut(s) 688, 736, 821, 930, 956, 1070
Kzo9I GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
LmnI GCTCC 3 cut(s) 90, 508, 1088
Lsp1109I GCAGC 3 cut(s) 401, 620, 1086
LweI GCATC 4 cut(s) 230, 481, 719, 921
MaeI CTAG 3 cut(s) 680, 692, 876
MaeII ACGT 2 cut(s) 590, 912
MaeIII GTNAC 2 cut(s) 751, 913
MalI GATC 7 cut(s) 299, 327, 381, 484, 524, 675, 925
MboI GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
MboII GAAGA 5 cut(s) 18, 184, 511, 575, 748
MhlI GDGCHC 1 cut(s) 1085
MluCI AATT 2 cut(s) 354, 795
MmeI TCCRAC 3 cut(s) 331, 420, 441
Mph1103I ATGCAT 1 cut(s) 734
MroXI GAANNNNTTC 1 cut(s) 810
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 1004
MspI CCGG 2 cut(s) 265, 363
MspR9I CCNGG 2 cut(s) 266, 364
MwoI GCNNNNNNNGC 6 cut(s) 91, 100, 203, 866, 1060, 1089
NciI CCSGG 2 cut(s) 266, 364
NdeII GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
NlaIII CATG 6 cut(s) 688, 736, 821, 930, 956, 1070
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 2 cut(s) 271, 353
NmuCI GTSAC 2 cut(s) 751, 913
NsiI ATGCAT 1 cut(s) 734
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 624
PaeI GCATGC 1 cut(s) 821
PagI TCATGA 1 cut(s) 952
PdmI GAANNNNTTC 1 cut(s) 810
PkrI GCNGC 5 cut(s) 205, 215, 391, 610, 1101
Ple19I CGATCG 2 cut(s) 382, 485
Psp1406I AACGTT 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 330, 743, 827
PstI CTGCAG 1 cut(s) 850
PvuI CGATCG 2 cut(s) 382, 485
RseI CAYNNNNRTG 1 cut(s) 1004
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 5 cut(s) 204, 214, 390, 609, 1100
Sau3AI GATC 7 cut(s) 297, 325, 379, 482, 522, 673, 923
Sau96I GGNCC 3 cut(s) 330, 743, 827
ScrFI CCNGG 2 cut(s) 266, 364
SduI GDGCHC 1 cut(s) 1085
SfaNI GCATC 4 cut(s) 230, 481, 719, 921
SfcI CTRYAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 624
SinI GGWCC 2 cut(s) 743, 827
SmiMI CAYNNNNRTG 1 cut(s) 1004
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SphI GCATGC 1 cut(s) 821
Sse9I AATT 2 cut(s) 354, 795
SspI AATATT 1 cut(s) 569
SspMI CTAG 3 cut(s) 680, 692, 876
StyD4I CCNGG 2 cut(s) 264, 362
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 1 cut(s) 887
TaiI ACGT 2 cut(s) 593, 915
TaqI TCGA 5 cut(s) 284, 485, 525, 624, 676
TasI AATT 2 cut(s) 354, 795
TauI GCSGC 2 cut(s) 206, 216
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 3 cut(s) 457, 760, 1011
TseFI GTSAC 2 cut(s) 751, 913
TseI GCWGC 3 cut(s) 389, 608, 1099
Tsp45I GTSAC 2 cut(s) 751, 913
TspDTI ATGAA 7 cut(s) 576, 749, 782, 819, 852, 956, 1055
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 457, 760, 1011
VpaK11BI GGWCC 2 cut(s) 743, 827
XapI RAATTY 1 cut(s) 354
XceI RCATGY 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 3 cut(s) 680, 692, 876
ZraI GACGTC 1 cut(s) 913
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.