RLG00000010449

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011407
Physical Location & Seq
Forward (+)
1714296 .. 1717216
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010449

Sequence Viewer

Length: 1110 bp
ATGCCACTCTTCTCTCACCGCCAGTCTTCCCCTCTCCCCACCACCACCTCCTCCTACTCCTCCAAGCTCCTCAAGCCCCTGAAACCCACCTCCGCCTCCGTCCCCACTCGCACTCCCCTGCCCATTATCGTCTTTTCACTCATCTCCCTCCTCATCGGCCTCGTCGGAACAATCTTCGCCGTCGCCGCCCTCCGCCGCTCCACACCCCTCCCCCCCGTTTTCCGATGCGGCAAATCCGAAGATACTTTCCGAGCATTCTACTCCCTCTCCAATTCTCGCAACCTCAACCACAATGCCGGGTTGATTGAACGGCCTAAGCTTCTCGGCTTCGTCGGAATTCAGACCGGGTTCGGGGCAGCTGATCGCCGCGCCGCCCTGCGCACCACTTGGTTTCCTTCCGACCCAGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCTTTTAGGTTTGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATAAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCGGCGTTTCAACAGTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATTTATCTGCGCCCAGATCGACTAGCAACACTTCTAGCTAAGGAGAGAACAGATTCACAAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATAACTGACCCAAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGGAATGAATACTTTCAACATGCCTATGCTCCTATTTATGTTCTATCTGCAGAGGTGGTTGTGTCATTGGCAACTGCTAAAAATAACAGTTTGAGAATGTTTAGCAATGAAGATGTCACAATTGGATCATGGATGCTTGCCATGAATGTCCATCATGAGGATAATCGGTTTTTATGTGACCCTCGGTGCTCACCTAGATCCATTGCAGTGTGGGACATCCCAAAATGTTCAGGTTTATGCAATCCAGCTATTCGGATGAAAGAGCTTCATGCAATGAGTATGTGCTCCAAAAGTCCAACCCTGCTCCCTACTGATGCTGATGACAGATAG

Protein Analysis

370

Amino Acids

41.5

Weight (kDa)

9.18

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 121 - 315 4.6e-51 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 1 cut(s) 369
AciI CCGC 9 cut(s) 19, 93, 186, 193, 196, 228, 367, 372, 590
AclI AACGTT 1 cut(s) 572
AclWI GGATC 2 cut(s) 913, 972
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 479
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 351, 937
AgsI TTSAA 5 cut(s) 308, 586, 599, 608, 797
Alw21I GWGCWC 2 cut(s) 971, 1067
Alw26I GTCTC 2 cut(s) 416, 513
AlwI GGATC 2 cut(s) 913, 972
AoxI GGCC 2 cut(s) 157, 311
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 336
Asp700I GAANNNNTTC 2 cut(s) 691, 792
AspLEI GCGC 3 cut(s) 371, 381, 651
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 2 cut(s) 298, 346
AsuHPI GGTGA 3 cut(s) 8, 541, 963
AvaII GGWCC 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 971, 1067
BbvI GCAGC 1 cut(s) 368
BccI CCATC 3 cut(s) 401, 478, 939
BceAI ACGGC 2 cut(s) 164, 326
BcnI CCSGG 2 cut(s) 298, 346
BcoDI GTCTC 2 cut(s) 416, 513
BfaI CTAG 3 cut(s) 662, 674, 975
BfmI CTRYAG 1 cut(s) 828
BisI GCNGC 7 cut(s) 186, 196, 229, 357, 367, 372, 591
BlsI GCNGC 7 cut(s) 187, 197, 230, 358, 368, 373, 592
Bme1390I CCNGG 2 cut(s) 298, 346
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 725
BmrFI CCNGG 2 cut(s) 298, 346
BmsI GCATC 4 cut(s) 215, 463, 903, 1084
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 315, 678
BpuEI CTTGAG 2 cut(s) 56, 436
BpuMI CCSGG 2 cut(s) 298, 346
BsaBI GATNNNNATC 2 cut(s) 536, 642
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 563, 962
BsaXI ACNNNNNCTCC 4 cut(s) 97, 127, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 937
Bse1I ACTGG 3 cut(s) 22, 439, 728
Bse3DI GCAATG 3 cut(s) 892, 981, 1059
Bse8I GATNNNNATC 2 cut(s) 536, 642
BseDI CCNNGG 2 cut(s) 563, 962
BseGI GGATG 4 cut(s) 550, 918, 996, 1041
BseJI GATNNNNATC 2 cut(s) 536, 642
BseLI CCNNNNNNNGG 2 cut(s) 351, 937
BseMI GCAATG 3 cut(s) 892, 981, 1059
BseNI ACTGG 3 cut(s) 22, 439, 728
BseRI GAGGAG 4 cut(s) 40, 49, 59, 140
BseXI GCAGC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 159, 313
BsiEI CGRYCG 1 cut(s) 467
BsiHKAI GWGCWC 2 cut(s) 971, 1067
BsiSI CCGG 2 cut(s) 297, 345
BslFI GGGAC 2 cut(s) 86, 1007
BslI CCNNNNNNNGG 2 cut(s) 351, 937
BsmAI GTCTC 2 cut(s) 416, 513
BsmFI GGGAC 2 cut(s) 86, 1007
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 2 cut(s) 159, 313
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 971, 1067
Bsp143I GATC 5 cut(s) 361, 464, 655, 905, 977
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 9 cut(s) 19, 93, 186, 193, 196, 228, 367, 372, 590
BspANI GGCC 2 cut(s) 159, 313
BspFNI CGCG 1 cut(s) 369
BspHI TCATGA 1 cut(s) 934
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 2 cut(s) 913, 972
BspTNI GGTCTC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 3 cut(s) 892, 981, 1059
BsrI ACTGG 3 cut(s) 22, 439, 728
BssECI CCNNGG 2 cut(s) 563, 962
BssMI GATC 5 cut(s) 361, 464, 655, 905, 977
BssT1I CCWWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 603, 869
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 2 cut(s) 315, 678
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 4 cut(s) 550, 918, 996, 1041
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 3 cut(s) 371, 381, 651
BstKTI GATC 5 cut(s) 364, 467, 658, 908, 980
BstMAI GTCTC 2 cut(s) 416, 513
BstMBI GATC 5 cut(s) 361, 464, 655, 905, 977
BstMCI CGRYCG 1 cut(s) 467
BstMWI GCNNNNNNNGC 2 cut(s) 73, 185
BstNSI RCATGY 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 296, 344
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 977
BstYI RGATCY 1 cut(s) 977
BsuRI GGCC 2 cut(s) 159, 313
BtgI CCRYGG 1 cut(s) 563
BtsCI GGATG 4 cut(s) 550, 918, 996, 1041
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 2 cut(s) 735, 993
Cac8I GCNNGC 1 cut(s) 918
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 371, 381, 651
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 514
CviAII CATG 7 cut(s) 564, 715, 800, 909, 922, 935, 1049
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 2 cut(s) 315, 678
DpnI GATC 5 cut(s) 363, 466, 657, 907, 979
DpnII GATC 5 cut(s) 361, 464, 655, 905, 977
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 2 cut(s) 82, 182
Eco130I CCWWGG 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 7 cut(s) 567, 718, 803, 912, 925, 938, 1052
FaqI GGGAC 2 cut(s) 86, 1007
FatI CATG 7 cut(s) 563, 714, 799, 908, 921, 934, 1048
Fnu4HI GCNGC 7 cut(s) 186, 196, 229, 357, 367, 372, 591
FokI GGATG 4 cut(s) 557, 925, 983, 1048
Fsp4HI GCNGC 7 cut(s) 186, 196, 229, 357, 367, 372, 591
FspBI CTAG 3 cut(s) 662, 674, 975
FspI TGCGCA 1 cut(s) 380
GlaI GCGC 3 cut(s) 370, 380, 650
GluI GCNGC 7 cut(s) 186, 196, 229, 357, 367, 372, 591
HaeIII GGCC 2 cut(s) 159, 313
HapII CCGG 2 cut(s) 297, 345
HhaI GCGC 3 cut(s) 371, 381, 651
Hin1II CATG 7 cut(s) 567, 718, 803, 912, 925, 938, 1052
Hin6I GCGC 3 cut(s) 369, 379, 649
HinP1I GCGC 3 cut(s) 369, 379, 649
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 692
HpaII CCGG 2 cut(s) 297, 345
HphI GGTGA 3 cut(s) 8, 541, 963
Hpy188III TCNNGA 3 cut(s) 415, 768, 935
Hpy99I CGWCG 3 cut(s) 167, 185, 335
HpyAV CCTTC 2 cut(s) 405, 569
HpyCH4III ACNGT 2 cut(s) 603, 869
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 6 cut(s) 476, 714, 830, 986, 1020, 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 185
HpyF3I CTNAG 2 cut(s) 315, 678
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 7 cut(s) 567, 718, 803, 912, 925, 938, 1052
HspAI GCGC 3 cut(s) 369, 379, 649
Kzo9I GATC 5 cut(s) 361, 464, 655, 905, 977
LmnI GCTCC 5 cut(s) 72, 203, 814, 1070, 1089
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 4 cut(s) 215, 463, 903, 1084
MaeI CTAG 3 cut(s) 662, 674, 975
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 2 cut(s) 895, 956
MalI GATC 5 cut(s) 363, 466, 657, 907, 979
MbiI CCGCTC 1 cut(s) 198
MboI GATC 5 cut(s) 361, 464, 655, 905, 977
MboII GAAGA 6 cut(s) 18, 166, 251, 493, 730, 902
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 977
MhlI GDGCHC 2 cut(s) 971, 1067
MluCI AATT 3 cut(s) 271, 336, 900
MmeI TCCRAC 6 cut(s) 145, 313, 402, 423, 555, 1100
MroXI GAANNNNTTC 2 cut(s) 691, 792
MslI CAYNNNNRTG 2 cut(s) 804, 986
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 297, 345
MspR9I CCNGG 2 cut(s) 298, 346
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 254
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 73, 185
NciI CCSGG 2 cut(s) 298, 346
NcoI CCATGG 1 cut(s) 563
NdeII GATC 5 cut(s) 361, 464, 655, 905, 977
NlaIII CATG 7 cut(s) 567, 718, 803, 912, 925, 938, 1052
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 895, 956
NsbI TGCGCA 1 cut(s) 380
NspI RCATGY 1 cut(s) 803
PagI TCATGA 1 cut(s) 934
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 2 cut(s) 691, 792
PfeI GAWTC 1 cut(s) 692
PkrI GCNGC 7 cut(s) 187, 197, 230, 358, 368, 373, 592
Ple19I CGATCG 1 cut(s) 467
Psp1406I AACGTT 1 cut(s) 572
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 1 cut(s) 977
PvuI CGATCG 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 2 cut(s) 804, 986
SatI GCNGC 7 cut(s) 186, 196, 229, 357, 367, 372, 591
Sau3AI GATC 5 cut(s) 361, 464, 655, 905, 977
Sau96I GGNCC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 298, 346
SduI GDGCHC 2 cut(s) 971, 1067
SfaNI GCATC 4 cut(s) 215, 463, 903, 1084
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 2 cut(s) 804, 986
SmlI CTYRAG 2 cut(s) 71, 415
SmoI CTYRAG 2 cut(s) 71, 415
Sse9I AATT 3 cut(s) 271, 336, 900
SsiI CCGC 9 cut(s) 19, 93, 186, 193, 196, 228, 367, 372, 590
SspMI CTAG 3 cut(s) 662, 674, 975
StyD4I CCNGG 2 cut(s) 296, 344
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 2 cut(s) 603, 869
TaiI ACGT 1 cut(s) 575
TaqI TCGA 2 cut(s) 467, 658
TasI AATT 3 cut(s) 271, 336, 900
TatI WGTACW 1 cut(s) 513
TauI GCSGC 6 cut(s) 188, 198, 231, 369, 374, 593
TfiI GAWTC 1 cut(s) 692
TscAI CASTG 2 cut(s) 735, 993
TseFI GTSAC 2 cut(s) 895, 956
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 895, 956
TspDTI ATGAA 8 cut(s) 561, 731, 764, 801, 903, 938, 1037, 1052
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 2 cut(s) 735, 993
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XmnI GAANNNNTTC 2 cut(s) 691, 792
XspI CTAG 3 cut(s) 662, 674, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.