pycom08g05130

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011407
Physical Location & Seq
Reverse (-)
3936758 .. 3939348
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05130.1

Sequence Viewer

Length: 1227 bp
ATGGAAATCCAATTAGAGGAACTAGAACACAAGTTGAATGGTAACTTCCAACCTCTCACATCTTCACCCGCCCTGAGATCTAGGACACTTTACACGCACACACTGTGGGAAGTGACAAAAATGCCACTCTTTTTCCACCGCCAATCTTCTCTCCCCACCGCCACCGCCACCTCGCCCTCCTACTCCTCCAAGCTCCTCAAGCCCCTAAAGCCCCATCCTGCCACTGTCCCCACCCGCACTCCCCTGCCCATTATCGTCTTTTCACTCGTCTCCCTCTTCATCGGCCTCGCCGGAACCATCTTCGCCGTGGCCGCCTTCCGCCGCCCGACCCTCCTTCCCATTTTCCGATGCGGCAAATCGGACGACACATTCCGGGGGTTCTACTCTCTGTCGAAGTCTCGGCAGGTCGGTGATAAAATTGGTGGCTTGGTTGATCGGCCCAAGCTTCTTGGGTTCGTCGGAATTCAGACCTGGTTCGGCTCGGCCGATCGCCGTGCAGCGTTGCGGAACACTTGGTTTCCTTCCGACCCAGCTGGCCTTTTGAGGTTGGAACAAGCTACTGGTTTAGCATTTAGGTTCGTTATCGGGCGGTCGAAAGATGCAAAGAAGATGGCGGAGCTTCAGAAAGAGATCGATAAGAACAGAGACTTTTTGGTTATTGATATCAATGAAGAATATTTAAACCTTCCGTGGAAAACGTTGGCATTTTTCAAAGCAGCATTTCAACTTTTCGAAGCAGATTACTATGTCAAAGCCAATGATGACATTTATTTGCGTCCAGATCGACTAGCAACGCTTCTAGCCAAGGAACGAACACATCCACAAACCTACATTGGATGCATGAAGAAAGGACGAGTAGTCACTGACCCTAAAATGAAATGGTATGAGAAATCAGGACATCTAATTGGGAATGAATACTTTCAGCATGCTTTTGGTCCTATTTATGTTCTGTCTGCAGAGGTGGTAGCTTCATTAGCAGTCGCTAGAAATAACAGTTTGAGAATGTTTAGCAATGAGGACGTCACGATTGGATCATGGATGCTTGCTATGAATGTCAATCATGAGGATAATCGGGCATTATGTGACCCTCGTTGCACGCTCGCATCCATTGCAGTGTGGGACATCCCAAAATGTTCAGGTTTGTGCAACCCAGCTATTAGGCTGAGAGAGCTTCATGAAATGAGAATGTGCTCCAAAAGTCCGACGCTGCCTCCTGATGACAGATAA

Protein Analysis

409

Amino Acids

46.17

Weight (kDa)

9.44

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 163 - 357 6.3e-49 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1023
Acc36I ACCTGC 1 cut(s) 394
AclI AACGTT 1 cut(s) 698
AclWI GGATC 1 cut(s) 1039
AcoI YGGCCR 2 cut(s) 309, 483
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 1020
AdeI CACNNNGTG 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 37, 712, 725
AhdI GACNNNNNGTC 1 cut(s) 857
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 8 cut(s) 193, 445, 533, 557, 619, 968, 1154, 1171
AluI AGCT 8 cut(s) 193, 445, 533, 557, 619, 968, 1154, 1171
Alw21I GWGCWC 1 cut(s) 1193
Alw26I GTCTC 3 cut(s) 274, 402, 639
AlwI GGATC 1 cut(s) 1039
AoxI GGCC 5 cut(s) 283, 309, 437, 483, 535
ApeKI GCWGC 3 cut(s) 497, 716, 1207
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 918
AspS9I GGNCC 2 cut(s) 438, 935
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 57, 422
AsuII TTCGAA 1 cut(s) 732
AvaII GGWCC 1 cut(s) 935
Bbv12I GWGCWC 1 cut(s) 1193
BbvI GCAGC 3 cut(s) 509, 728, 1194
BccI CCATC 3 cut(s) 222, 305, 604
BceAI ACGGC 2 cut(s) 290, 477
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 1 cut(s) 472
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 3 cut(s) 274, 402, 639
BfaI CTAG 5 cut(s) 23, 81, 788, 800, 984
BfmI CTRYAG 1 cut(s) 954
BfuAI ACCTGC 1 cut(s) 394
BglII AGATCT 1 cut(s) 77
BisI GCNGC 6 cut(s) 312, 322, 352, 498, 717, 1208
BlsI GCNGC 6 cut(s) 313, 323, 353, 499, 718, 1209
Bme1390I CCNGG 2 cut(s) 374, 472
Bme18I GGWCC 1 cut(s) 935
BmeRI GACNNNNNGTC 1 cut(s) 857
BmgT120I GGNCC 2 cut(s) 438, 935
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 2 cut(s) 374, 472
BmsI GCATC 5 cut(s) 338, 589, 827, 1029, 1112
Bpu14I TTCGAA 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 1020
BsaJI CCNNGG 4 cut(s) 306, 373, 689, 804
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 1195, 1225
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 565
Bse3DI GCAATG 2 cut(s) 1018, 1107
BseBI CCWGG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 633
BseDI CCNNGG 4 cut(s) 306, 373, 689, 804
BseGI GGATG 6 cut(s) 214, 817, 842, 1044, 1103, 1122
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 1018, 1107
BseMII CTCAG 2 cut(s) 65, 1154
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 175, 185
BseX3I CGGCCG 1 cut(s) 483
BseXI GCAGC 3 cut(s) 509, 728, 1194
BseYI CCCAGC 2 cut(s) 529, 1150
BsgI GTGCAG 1 cut(s) 516
Bsh1285I CGRYCG 3 cut(s) 486, 490, 593
BshFI GGCC 5 cut(s) 285, 311, 439, 485, 537
BshVI ATCGAT 1 cut(s) 633
BsiEI CGRYCG 3 cut(s) 486, 490, 593
BsiHKAI GWGCWC 1 cut(s) 1193
BsiSI CCGG 2 cut(s) 291, 373
BslFI GGGAC 2 cut(s) 212, 1133
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 3 cut(s) 274, 402, 639
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 2 cut(s) 212, 1133
BsnI GGCC 5 cut(s) 285, 311, 439, 485, 537
Bsp119I TTCGAA 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 1193
Bsp143I GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
BspANI GGCC 5 cut(s) 285, 311, 439, 485, 537
BspCNI CTCAG 2 cut(s) 66, 1155
BspDI ATCGAT 1 cut(s) 633
BspHI TCATGA 2 cut(s) 1060, 1174
BspLI GGNNCC 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 958
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 1 cut(s) 1039
BspT104I TTCGAA 1 cut(s) 732
BsrDI GCAATG 2 cut(s) 1018, 1107
BsrI ACTGG 1 cut(s) 565
BssECI CCNNGG 4 cut(s) 306, 373, 689, 804
BssMI GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
BssNI GRCGYC 1 cut(s) 1020
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 3 cut(s) 105, 226, 995
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 1020
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstBI TTCGAA 1 cut(s) 732
BstC8I GCNNGC 5 cut(s) 535, 927, 1044, 1097, 1101
BstDEI CTNAG 2 cut(s) 74, 1163
BstDSI CCRYGG 2 cut(s) 306, 689
BstF5I GGATG 6 cut(s) 214, 817, 842, 1044, 1103, 1122
BstKTI GATC 6 cut(s) 80, 436, 490, 633, 784, 1034
BstMAI GTCTC 3 cut(s) 274, 402, 639
BstMBI GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
BstMCI CGRYCG 3 cut(s) 486, 490, 593
BstMWI GCNNNNNNNGC 6 cut(s) 199, 208, 311, 974, 1109, 1168
BstNI CCWGG 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 372, 470
BstSFI CTRYAG 1 cut(s) 954
BstV1I GCAGC 3 cut(s) 509, 728, 1194
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 633
BsuRI GGCC 5 cut(s) 285, 311, 439, 485, 537
BsuTUI ATCGAT 1 cut(s) 633
BtgI CCRYGG 2 cut(s) 306, 689
BtsCI GGATG 6 cut(s) 214, 817, 842, 1044, 1103, 1122
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 4 cut(s) 101, 222, 861, 1119
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 5 cut(s) 535, 927, 1044, 1097, 1101
CciI TCATGA 2 cut(s) 1060, 1174
Cfr13I GGNCC 2 cut(s) 438, 935
ClaI ATCGAT 1 cut(s) 633
CseI GACGC 2 cut(s) 764, 1213
CsiI ACCWGGT 1 cut(s) 470
CviAII CATG 5 cut(s) 841, 926, 1035, 1061, 1175
DdeI CTNAG 2 cut(s) 74, 1163
DpnI GATC 6 cut(s) 79, 435, 489, 632, 783, 1033
DpnII GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
DraI TTTAAA 1 cut(s) 681
DraIII CACNNNGTG 1 cut(s) 105
DriI GACNNNNNGTC 1 cut(s) 857
EaeI YGGCCR 2 cut(s) 309, 483
EagI CGGCCG 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 281
Eam1105I GACNNNNNGTC 1 cut(s) 857
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 2 cut(s) 308, 629
EclXI CGGCCG 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 804
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 935
Eco52I CGGCCG 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 470
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 804
EcoT22I ATGCAT 1 cut(s) 842
ErhI CCWWGG 1 cut(s) 804
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 5 cut(s) 844, 929, 1038, 1064, 1178
FaqI GGGAC 2 cut(s) 212, 1133
FatI CATG 5 cut(s) 840, 925, 1034, 1060, 1174
FauI CCCGC 2 cut(s) 76, 242
Fnu4HI GCNGC 6 cut(s) 312, 322, 352, 498, 717, 1208
FokI GGATG 6 cut(s) 201, 804, 849, 1051, 1090, 1109
Fsp4HI GCNGC 6 cut(s) 312, 322, 352, 498, 717, 1208
FspBI CTAG 5 cut(s) 23, 81, 788, 800, 984
GluI GCNGC 6 cut(s) 312, 322, 352, 498, 717, 1208
GsaI CCCAGC 2 cut(s) 533, 1154
HaeIII GGCC 5 cut(s) 285, 311, 439, 485, 537
HapII CCGG 2 cut(s) 291, 373
HgaI GACGC 2 cut(s) 764, 1213
Hin1I GRCGYC 1 cut(s) 1020
Hin1II CATG 5 cut(s) 844, 929, 1038, 1064, 1178
HindIII AAGCTT 1 cut(s) 443
HpaII CCGG 2 cut(s) 291, 373
HphI GGTGA 2 cut(s) 57, 422
Hpy188I TCNGA 7 cut(s) 347, 361, 461, 468, 526, 624, 1203
Hpy188III TCNNGA 6 cut(s) 779, 894, 1024, 1061, 1175, 1214
Hpy99I CGWCG 2 cut(s) 461, 1207
HpyAV CCTTC 4 cut(s) 325, 344, 531, 695
HpyCH4III ACNGT 3 cut(s) 105, 226, 995
HpyCH4IV ACGT 2 cut(s) 698, 1020
HpyCH4V TGCA 7 cut(s) 497, 602, 840, 956, 1095, 1112, 1146
HpyF10VI GCNNNNNNNGC 6 cut(s) 199, 208, 311, 974, 1109, 1168
HpyF3I CTNAG 2 cut(s) 74, 1163
HpySE526I ACGT 2 cut(s) 698, 1020
Hsp92I GRCGYC 1 cut(s) 1020
Hsp92II CATG 5 cut(s) 844, 929, 1038, 1064, 1178
Kzo9I GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
LmnI GCTCC 3 cut(s) 198, 616, 1196
Lsp1109I GCAGC 3 cut(s) 509, 728, 1194
LweI GCATC 5 cut(s) 338, 589, 827, 1029, 1112
MabI ACCWGGT 1 cut(s) 470
MaeI CTAG 5 cut(s) 23, 81, 788, 800, 984
MaeII ACGT 2 cut(s) 698, 1020
MaeIII GTNAC 5 cut(s) 41, 112, 859, 1021, 1082
MalI GATC 6 cut(s) 79, 435, 489, 632, 783, 1033
MboI GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
MboII GAAGA 7 cut(s) 54, 138, 268, 292, 619, 683, 856
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 1193
MluCI AATT 4 cut(s) 11, 417, 462, 903
MmeI TCCRAC 5 cut(s) 73, 439, 528, 549, 1226
Mph1103I ATGCAT 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 918
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 1 cut(s) 1112
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 2 cut(s) 291, 373
MspR9I CCNGG 2 cut(s) 374, 472
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 6 cut(s) 199, 208, 311, 974, 1109, 1168
NciI CCSGG 1 cut(s) 374
NdeII GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
NlaIII CATG 5 cut(s) 844, 929, 1038, 1064, 1178
NlaIV GGNNCC 1 cut(s) 295
NmeAIII GCCGAG 2 cut(s) 379, 461
NmuCI GTSAC 4 cut(s) 112, 859, 1021, 1082
NsiI ATGCAT 1 cut(s) 842
NspI RCATGY 1 cut(s) 929
NspV TTCGAA 1 cut(s) 732
PaeI GCATGC 1 cut(s) 929
PagI TCATGA 2 cut(s) 1060, 1174
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 918
PkrI GCNGC 6 cut(s) 313, 323, 353, 499, 718, 1209
Ple19I CGATCG 1 cut(s) 490
Psp1406I AACGTT 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 470
PspFI CCCAGC 2 cut(s) 529, 1150
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 438, 935
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 1 cut(s) 77
PvuI CGATCG 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 533
RseI CAYNNNNRTG 1 cut(s) 1112
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 6 cut(s) 312, 322, 352, 498, 717, 1208
Sau3AI GATC 6 cut(s) 77, 433, 487, 630, 781, 1031
Sau96I GGNCC 2 cut(s) 438, 935
ScrFI CCNGG 2 cut(s) 374, 472
SduI GDGCHC 1 cut(s) 1193
SexAI ACCWGGT 1 cut(s) 470
SfaNI GCATC 5 cut(s) 338, 589, 827, 1029, 1112
SfcI CTRYAG 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 732
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 1 cut(s) 1112
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 929
Sse9I AATT 4 cut(s) 11, 417, 462, 903
SspI AATATT 1 cut(s) 677
SspMI CTAG 5 cut(s) 23, 81, 788, 800, 984
StyD4I CCNGG 2 cut(s) 372, 470
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 3 cut(s) 105, 226, 995
TaiI ACGT 2 cut(s) 701, 1023
TaqI TCGA 5 cut(s) 392, 593, 633, 732, 784
TasI AATT 4 cut(s) 11, 417, 462, 903
TauI GCSGC 3 cut(s) 314, 324, 354
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 4 cut(s) 108, 229, 868, 1119
TseFI GTSAC 4 cut(s) 112, 859, 1021, 1082
TseI GCWGC 3 cut(s) 497, 716, 1207
Tsp45I GTSAC 4 cut(s) 112, 859, 1021, 1082
TspDTI ATGAA 9 cut(s) 268, 684, 857, 890, 927, 960, 1064, 1163, 1191
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 4 cut(s) 108, 229, 868, 1119
VpaK11BI GGWCC 1 cut(s) 935
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 5 cut(s) 23, 81, 788, 800, 984
ZraI GACGTC 1 cut(s) 1021
Zsp2I ATGCAT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.