MD15G1059900.v1.1

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011407
Physical Location & Seq
Forward (+)
4008184 .. 4011047
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1059900.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGCCACTCTTTTTCCACCGCCAATCTTCTCTCCCCACCGCCACCGCCACCGCCACCTCCCCCTCCTACTCCTCCAAGCTCCTCAAGCCCCTAAAGCCCCATCCTGCCACTGTCCCCACCCGCACTCCCCTGCCCATTATCGTCTTTTCACTCGTCTCCCTCTTCATCGGCCTTGCCGGAACCATCTTCGCCATCGCCGCCTTCCGCCGCCCTACCCCCATTCCCATTTTCCGATGCGGCAAATCGGACGACACTTTCCGGGGGTTCTACTCTCTGTCGAAGTCTCGGCAGGCCGGGGATAAAAATGGTGGCTTGGTTGATCGGCCCAAGCTTCTTGGGCTCGTCGGAATTCAGACCGGGTTCGGCTCGGCCAATCGCCGTGCAGCGTTGCGGAACACTTGGTTTCCTTCCGGCCCAGATGGCCTTTTGAGGTTGGAACAAGCTACTGGTTTAGCATTTAGGTTCGTTATTGGGCGATCGAAAGACTCAAAGAAGATGGCAGAGCTTCAGAAAGAGATCGATAAGTACAGGGACTTTTTGGTTATTGATATCAATGAAGAATATCCAAACCTTCCATGGAAAACGTTGGCGTTTTTCAAATCAGGATTTCAACTTTTCGAAGCAGATTACTACGTCAAAGCCAATGATGACATTTATTTGCGTCCAGATCGACTAGCAACACTTCTAGCCAAGGAACGAACACATCCACAAACCTACATTGGATGCATGAAGAAAGGACCAGTAGTCACTGACCCTAAAATGAAATGGTATGAGAAATCAGGACATCTAATCGGGAATGAATACTTTCAGCATGCTTTTGGTCCTATTTATGTTCTGTCTGCAGAGGTGGTAGCATCATTGGCAATCGCTAGAAATAGCAGTTTGAGAATGTTTAGCAATGAGGACGTCATGGTTGGATCATGGATGCTTGCTATGAATGTCAATCATGAGGATAATCGGGCATTATGTGACCCTCGCTGCACACCTACATCCGTTGCAGTCTGGGACATCCCAAAATGTTCAGGTTTGTGCAACCCAGCTATTAGGCTGAAAGAGCTTCATGCGATGAGAATGTGCTCCAAAAGTCCGACTCTGCTTCCTGATGACGGATAA

Protein Analysis

371

Amino Acids

41.27

Weight (kDa)

9.51

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 125 - 319 3e-50 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 909
AclI AACGTT 1 cut(s) 584
AclWI GGATC 1 cut(s) 925
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 1106
AgsI TTSAA 2 cut(s) 598, 611
AhdI GACNNNNNGTC 1 cut(s) 743
AluBI AGCT 6 cut(s) 79, 331, 443, 505, 1040, 1057
AluI AGCT 6 cut(s) 79, 331, 443, 505, 1040, 1057
Alw21I GWGCWC 1 cut(s) 1079
Alw26I GTCTC 2 cut(s) 160, 288
AlwI GGATC 1 cut(s) 925
AoxI GGCC 6 cut(s) 169, 291, 323, 369, 412, 421
ApeKI GCWGC 2 cut(s) 383, 978
ApoI RAATTY 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 804
AspS9I GGNCC 4 cut(s) 324, 413, 737, 821
AsuC2I CCSGG 3 cut(s) 260, 295, 358
AsuII TTCGAA 1 cut(s) 618
AvaII GGWCC 2 cut(s) 737, 821
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 1079
BbvI GCAGC 2 cut(s) 395, 965
BccI CCATC 5 cut(s) 108, 191, 200, 413, 490
BceAI ACGGC 1 cut(s) 363
BcnI CCSGG 3 cut(s) 260, 295, 358
BcoDI GTCTC 2 cut(s) 160, 288
BfaI CTAG 3 cut(s) 674, 686, 870
BfmI CTRYAG 1 cut(s) 840
BglI GCCNNNNNGGC 1 cut(s) 420
BisI GCNGC 5 cut(s) 198, 208, 238, 384, 979
BlsI GCNGC 5 cut(s) 199, 209, 239, 385, 980
Bme1390I CCNGG 3 cut(s) 260, 295, 358
Bme18I GGWCC 2 cut(s) 737, 821
BmeRI GACNNNNNGTC 1 cut(s) 743
BmgT120I GGNCC 4 cut(s) 324, 413, 737, 821
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 3 cut(s) 260, 295, 358
BmsI GCATC 4 cut(s) 224, 713, 863, 915
Bpu14I TTCGAA 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 3 cut(s) 260, 295, 358
Bsa29I ATCGAT 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 4 cut(s) 259, 294, 575, 690
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 1106
Bse1I ACTGG 2 cut(s) 451, 740
Bse3DI GCAATG 1 cut(s) 904
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 4 cut(s) 259, 294, 575, 690
BseGI GGATG 6 cut(s) 100, 703, 728, 930, 989, 1008
BseLI CCNNNNNNNGG 1 cut(s) 1106
BseMI GCAATG 1 cut(s) 904
BseNI ACTGG 2 cut(s) 451, 740
BseRI GAGGAG 2 cut(s) 61, 71
BseXI GCAGC 2 cut(s) 395, 965
BseYI CCCAGC 1 cut(s) 1036
BsgI GTGCAG 2 cut(s) 402, 964
Bsh1285I CGRYCG 1 cut(s) 479
BshFI GGCC 6 cut(s) 171, 293, 325, 371, 414, 423
BshVI ATCGAT 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 1079
BsiSI CCGG 5 cut(s) 177, 259, 294, 357, 411
BslFI GGGAC 3 cut(s) 98, 545, 1019
BslI CCNNNNNNNGG 1 cut(s) 1106
BsmAI GTCTC 2 cut(s) 160, 288
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 3 cut(s) 98, 545, 1019
BsnI GGCC 6 cut(s) 171, 293, 325, 371, 414, 423
Bsp119I TTCGAA 1 cut(s) 618
Bsp1286I GDGCHC 2 cut(s) 342, 1079
Bsp143I GATC 5 cut(s) 319, 476, 516, 667, 917
Bsp19I CCATGG 1 cut(s) 575
BspANI GGCC 6 cut(s) 171, 293, 325, 371, 414, 423
BspDI ATCGAT 1 cut(s) 519
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 844
BspPI GGATC 1 cut(s) 925
BspT104I TTCGAA 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 904
BsrI ACTGG 2 cut(s) 451, 740
BssECI CCNNGG 4 cut(s) 259, 294, 575, 690
BssMI GATC 5 cut(s) 319, 476, 516, 667, 917
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 575, 690
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 906
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 3 cut(s) 291, 813, 930
BstDSI CCRYGG 1 cut(s) 575
BstF5I GGATG 6 cut(s) 100, 703, 728, 930, 989, 1008
BstKTI GATC 5 cut(s) 322, 479, 519, 670, 920
BstMAI GTCTC 2 cut(s) 160, 288
BstMBI GATC 5 cut(s) 319, 476, 516, 667, 917
BstMCI CGRYCG 1 cut(s) 479
BstMWI GCNNNNNNNGC 7 cut(s) 85, 94, 197, 337, 420, 860, 1054
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 3 cut(s) 258, 293, 356
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 2 cut(s) 395, 965
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 6 cut(s) 171, 293, 325, 371, 414, 423
BsuTUI ATCGAT 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 575
BtgZI GCGATG 2 cut(s) 178, 1079
BtsCI GGATG 6 cut(s) 100, 703, 728, 930, 989, 1008
BtsIMutI CAGTG 2 cut(s) 108, 747
Cac8I GCNNGC 3 cut(s) 291, 813, 930
CciI TCATGA 1 cut(s) 946
Cfr13I GGNCC 4 cut(s) 324, 413, 737, 821
ClaI ATCGAT 1 cut(s) 519
CseI GACGC 1 cut(s) 650
Csp6I GTAC 1 cut(s) 526
CviAII CATG 7 cut(s) 576, 727, 812, 910, 921, 947, 1061
CviQI GTAC 1 cut(s) 526
DpnI GATC 5 cut(s) 321, 478, 518, 669, 919
DpnII GATC 5 cut(s) 319, 476, 516, 667, 917
DriI GACNNNNNGTC 1 cut(s) 743
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 167
Eam1105I GACNNNNNGTC 1 cut(s) 743
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 575, 690
Eco24I GRGCYC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 737, 821
Eco57I CTGAAG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 348
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 575, 690
EcoT22I ATGCAT 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 2 cut(s) 575, 690
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 7 cut(s) 579, 730, 815, 913, 924, 950, 1064
FaqI GGGAC 3 cut(s) 98, 545, 1019
FatI CATG 7 cut(s) 575, 726, 811, 909, 920, 946, 1060
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 5 cut(s) 198, 208, 238, 384, 979
FokI GGATG 6 cut(s) 87, 690, 735, 937, 976, 995
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 5 cut(s) 198, 208, 238, 384, 979
FspBI CTAG 3 cut(s) 674, 686, 870
GluI GCNGC 5 cut(s) 198, 208, 238, 384, 979
GsaI CCCAGC 1 cut(s) 1040
HaeIII GGCC 6 cut(s) 171, 293, 325, 371, 414, 423
HapII CCGG 5 cut(s) 177, 259, 294, 357, 411
HgaI GACGC 1 cut(s) 650
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 7 cut(s) 579, 730, 815, 913, 924, 950, 1064
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 485, 1090
HpaII CCGG 5 cut(s) 177, 259, 294, 357, 411
Hpy188I TCNGA 6 cut(s) 233, 247, 347, 354, 510, 1089
Hpy188III TCNNGA 6 cut(s) 603, 665, 780, 793, 947, 1100
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 211, 417, 581
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 3 cut(s) 584, 633, 906
HpyCH4V TGCA 6 cut(s) 383, 726, 842, 981, 998, 1032
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 94, 197, 337, 420, 860, 1054
HpySE526I ACGT 3 cut(s) 584, 633, 906
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 7 cut(s) 579, 730, 815, 913, 924, 950, 1064
Kzo9I GATC 5 cut(s) 319, 476, 516, 667, 917
LmnI GCTCC 2 cut(s) 84, 1082
Lsp1109I GCAGC 2 cut(s) 395, 965
LweI GCATC 4 cut(s) 224, 713, 863, 915
MaeI CTAG 3 cut(s) 674, 686, 870
MaeII ACGT 3 cut(s) 584, 633, 906
MaeIII GTNAC 2 cut(s) 745, 968
MalI GATC 5 cut(s) 321, 478, 518, 669, 919
MboI GATC 5 cut(s) 319, 476, 516, 667, 917
MboII GAAGA 6 cut(s) 18, 154, 178, 505, 569, 742
MhlI GDGCHC 2 cut(s) 342, 1079
MluCI AATT 1 cut(s) 348
MlyI GAGTC 2 cut(s) 479, 1084
MmeI TCCRAC 4 cut(s) 325, 414, 895, 1112
Mph1103I ATGCAT 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 804
MspI CCGG 5 cut(s) 177, 259, 294, 357, 411
MspR9I CCNGG 3 cut(s) 260, 295, 358
MwoI GCNNNNNNNGC 7 cut(s) 85, 94, 197, 337, 420, 860, 1054
NciI CCSGG 3 cut(s) 260, 295, 358
NcoI CCATGG 1 cut(s) 575
NdeII GATC 5 cut(s) 319, 476, 516, 667, 917
NlaIII CATG 7 cut(s) 579, 730, 815, 913, 924, 950, 1064
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 2 cut(s) 265, 347
NmuCI GTSAC 2 cut(s) 745, 968
NsiI ATGCAT 1 cut(s) 728
NspI RCATGY 1 cut(s) 815
NspV TTCGAA 1 cut(s) 618
PaeI GCATGC 1 cut(s) 815
PagI TCATGA 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 804
PkrI GCNGC 5 cut(s) 199, 209, 239, 385, 980
Ple19I CGATCG 1 cut(s) 479
PleI GAGTC 2 cut(s) 479, 1084
PpsI GAGTC 2 cut(s) 479, 1084
Psp1406I AACGTT 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 1036
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 4 cut(s) 324, 413, 737, 821
PstI CTGCAG 1 cut(s) 844
PvuI CGATCG 1 cut(s) 479
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SatI GCNGC 5 cut(s) 198, 208, 238, 384, 979
Sau3AI GATC 5 cut(s) 319, 476, 516, 667, 917
Sau96I GGNCC 4 cut(s) 324, 413, 737, 821
SchI GAGTC 2 cut(s) 479, 1084
ScrFI CCNGG 3 cut(s) 260, 295, 358
SduI GDGCHC 2 cut(s) 342, 1079
SfaNI GCATC 4 cut(s) 224, 713, 863, 915
SfcI CTRYAG 1 cut(s) 840
SfiI GGCCNNNNNGGCC 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 618
SinI GGWCC 2 cut(s) 737, 821
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 815
Sse9I AATT 1 cut(s) 348
SspMI CTAG 3 cut(s) 674, 686, 870
StyD4I CCNGG 3 cut(s) 258, 293, 356
StyI CCWWGG 2 cut(s) 575, 690
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 3 cut(s) 587, 636, 909
TaqI TCGA 5 cut(s) 278, 479, 519, 618, 670
TasI AATT 1 cut(s) 348
TatI WGTACW 1 cut(s) 525
TauI GCSGC 3 cut(s) 200, 210, 240
TscAI CASTG 2 cut(s) 115, 754
TseFI GTSAC 2 cut(s) 745, 968
TseI GCWGC 2 cut(s) 383, 978
Tsp45I GTSAC 2 cut(s) 745, 968
TspDTI ATGAA 7 cut(s) 154, 570, 743, 776, 813, 950, 1049
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 2 cut(s) 115, 754
VpaK11BI GGWCC 2 cut(s) 737, 821
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 815
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 3 cut(s) 674, 686, 870
ZraI GACGTC 1 cut(s) 907
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.