Rh6BG508400

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011407
Physical Location & Seq
Reverse (-)
70536626 .. 70539525
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG508400.1

Sequence Viewer

Length: 1101 bp
ATGCCACTCTTCTCTCACCGCCAGTCTTCCCCTCTCCCCACCACCTCCTACTCCTCCAAGCTCCTCAAGCCCCTGAAACCCACCTCCGCCTCCGTCCCCACTCGCACTCCCCTGCCCATTATCGTCTTTTCCCTCATCTCCCTCCTCATCGGCCTCGCCGGAACAATCTTCGCCGTCGCCTCCCTCCGCCGCTCCACACCCCTCCCCGTTTTCCGATGCGGTAAATCCGAAGATACTTTCCGAGCATTCTACTCCCTCTCCAATTCTCGCAACCTCAACCACAATGCCGGGTTGATTGAACGGCCTAAGCTTCTCGGCTTCGTCGGAATTCAGACCGGGTTCGGGGCAGCTGATCGCCGCGCCGCCCTGCGCACCACTTGGTTTCCTTCCGACCCAGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCTTTTAGGTTTGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATAAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCGGCGTTTCAACAGTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATTTATCTGCGCCCAGATCGACTAGCAACACTTCTAGCTAAGGAGAGAACAGATTCACGAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATAACTGACCCAAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGGAATGAATACTTTCAACATGCCTATGCTCCTATTTATGTTCTATCTGCAGAGGTGGTTGTGTCATTGGCAACTGCTAAAAATAACAGTTTGAGAATGTTTAACAATGAAGATGTCACAATTGGATCATGGATGCTTGCTATGAATGTCCATCATGAGGATAATCGGTTTTTATGTGACCCTCGGTGCTCACCTAGATCCATTGCAGTGTGGGACATCCCAAAATGTTCAGGTTTATGCAATCCAGCTATTGGGATGAAAGAGCTTCATGCAATGAGTATGTGCTCCAAAAGTCCAACCCTGCTCCCTACTGATGCTGATGACAGATAG

Protein Analysis

366

Amino Acids

41.16

Weight (kDa)

9.18

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 118 - 312 2.4e-51 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 360
AciI CCGC 8 cut(s) 19, 87, 187, 190, 219, 358, 363, 581
AclI AACGTT 1 cut(s) 563
AclWI GGATC 2 cut(s) 904, 963
AcsI RAATTY 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 3 cut(s) 342, 928, 1022
AgsI TTSAA 5 cut(s) 299, 577, 590, 599, 788
Alw21I GWGCWC 2 cut(s) 962, 1058
Alw26I GTCTC 2 cut(s) 407, 504
AlwI GGATC 2 cut(s) 904, 963
AoxI GGCC 2 cut(s) 151, 302
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 327
Asp700I GAANNNNTTC 2 cut(s) 682, 783
AspLEI GCGC 3 cut(s) 362, 372, 642
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 2 cut(s) 289, 337
AsuHPI GGTGA 3 cut(s) 8, 532, 954
AvaII GGWCC 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 962, 1058
BbvI GCAGC 1 cut(s) 359
BccI CCATC 3 cut(s) 392, 469, 930
BceAI ACGGC 2 cut(s) 158, 317
BcnI CCSGG 2 cut(s) 289, 337
BcoDI GTCTC 2 cut(s) 407, 504
BfaI CTAG 3 cut(s) 653, 665, 966
BfmI CTRYAG 1 cut(s) 819
BisI GCNGC 5 cut(s) 190, 348, 358, 363, 582
BlsI GCNGC 5 cut(s) 191, 349, 359, 364, 583
Bme1390I CCNGG 2 cut(s) 289, 337
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmrFI CCNGG 2 cut(s) 289, 337
BmsI GCATC 4 cut(s) 206, 454, 894, 1075
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 306, 669
BpuEI CTTGAG 2 cut(s) 50, 427
BpuMI CCSGG 2 cut(s) 289, 337
BsaBI GATNNNNATC 2 cut(s) 527, 633
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 554, 953
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 928, 1022
Bse1I ACTGG 3 cut(s) 22, 430, 719
Bse3DI GCAATG 2 cut(s) 972, 1050
Bse8I GATNNNNATC 2 cut(s) 527, 633
BseDI CCNNGG 2 cut(s) 554, 953
BseGI GGATG 4 cut(s) 541, 909, 987, 1032
BseJI GATNNNNATC 2 cut(s) 527, 633
BseLI CCNNNNNNNGG 3 cut(s) 342, 928, 1022
BseMI GCAATG 2 cut(s) 972, 1050
BseNI ACTGG 3 cut(s) 22, 430, 719
BseRI GAGGAG 3 cut(s) 43, 53, 134
BseXI GCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 153, 304
BsiEI CGRYCG 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 962, 1058
BsiSI CCGG 3 cut(s) 159, 288, 336
BslFI GGGAC 2 cut(s) 80, 998
BslI CCNNNNNNNGG 3 cut(s) 342, 928, 1022
BsmAI GTCTC 2 cut(s) 407, 504
BsmFI GGGAC 2 cut(s) 80, 998
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 2 cut(s) 153, 304
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 962, 1058
Bsp143I GATC 5 cut(s) 352, 455, 646, 896, 968
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 8 cut(s) 19, 87, 187, 190, 219, 358, 363, 581
BspANI GGCC 2 cut(s) 153, 304
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 925
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 2 cut(s) 904, 963
BspTNI GGTCTC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 972, 1050
BsrI ACTGG 3 cut(s) 22, 430, 719
BssECI CCNNGG 2 cut(s) 554, 953
BssMI GATC 5 cut(s) 352, 455, 646, 896, 968
BssT1I CCWWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 594, 860
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 909
BstDEI CTNAG 2 cut(s) 306, 669
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 4 cut(s) 541, 909, 987, 1032
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 3 cut(s) 362, 372, 642
BstKTI GATC 5 cut(s) 355, 458, 649, 899, 971
BstMAI GTCTC 2 cut(s) 407, 504
BstMBI GATC 5 cut(s) 352, 455, 646, 896, 968
BstMCI CGRYCG 1 cut(s) 458
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 794
BstSCI CCNGG 2 cut(s) 287, 335
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 968
BstYI RGATCY 1 cut(s) 968
BsuRI GGCC 2 cut(s) 153, 304
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 4 cut(s) 541, 909, 987, 1032
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 2 cut(s) 726, 984
Cac8I GCNNGC 1 cut(s) 909
CciI TCATGA 1 cut(s) 925
CfoI GCGC 3 cut(s) 362, 372, 642
Cfr13I GGNCC 1 cut(s) 716
Csp6I GTAC 1 cut(s) 505
CviAII CATG 6 cut(s) 555, 706, 791, 900, 926, 1040
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 2 cut(s) 306, 669
DpnI GATC 5 cut(s) 354, 457, 648, 898, 970
DpnII GATC 5 cut(s) 352, 455, 646, 896, 968
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 2 cut(s) 76, 176
Eco130I CCWWGG 1 cut(s) 554
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 6 cut(s) 558, 709, 794, 903, 929, 1043
FaqI GGGAC 2 cut(s) 80, 998
FatI CATG 6 cut(s) 554, 705, 790, 899, 925, 1039
Fnu4HI GCNGC 5 cut(s) 190, 348, 358, 363, 582
FokI GGATG 4 cut(s) 548, 916, 974, 1039
Fsp4HI GCNGC 5 cut(s) 190, 348, 358, 363, 582
FspBI CTAG 3 cut(s) 653, 665, 966
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 3 cut(s) 361, 371, 641
GluI GCNGC 5 cut(s) 190, 348, 358, 363, 582
HaeIII GGCC 2 cut(s) 153, 304
HapII CCGG 3 cut(s) 159, 288, 336
HhaI GCGC 3 cut(s) 362, 372, 642
Hin1II CATG 6 cut(s) 558, 709, 794, 903, 929, 1043
Hin6I GCGC 3 cut(s) 360, 370, 640
HinP1I GCGC 3 cut(s) 360, 370, 640
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 683
HpaII CCGG 3 cut(s) 159, 288, 336
HphI GGTGA 3 cut(s) 8, 532, 954
Hpy188I TCNGA 8 cut(s) 215, 229, 242, 326, 333, 391, 489, 768
Hpy188III TCNNGA 4 cut(s) 406, 687, 759, 926
Hpy99I CGWCG 2 cut(s) 179, 326
HpyAV CCTTC 2 cut(s) 396, 560
HpyCH4III ACNGT 2 cut(s) 594, 860
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 6 cut(s) 467, 705, 821, 977, 1011, 1043
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 306, 669
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 6 cut(s) 558, 709, 794, 903, 929, 1043
HspAI GCGC 3 cut(s) 360, 370, 640
Kzo9I GATC 5 cut(s) 352, 455, 646, 896, 968
LmnI GCTCC 5 cut(s) 66, 197, 805, 1061, 1080
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 4 cut(s) 206, 454, 894, 1075
MaeI CTAG 3 cut(s) 653, 665, 966
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 886, 947
MalI GATC 5 cut(s) 354, 457, 648, 898, 970
MbiI CCGCTC 1 cut(s) 192
MboI GATC 5 cut(s) 352, 455, 646, 896, 968
MboII GAAGA 6 cut(s) 18, 160, 242, 484, 721, 893
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 1 cut(s) 968
MhlI GDGCHC 2 cut(s) 962, 1058
MluCI AATT 3 cut(s) 262, 327, 891
MmeI TCCRAC 5 cut(s) 304, 393, 414, 546, 1091
MroXI GAANNNNTTC 2 cut(s) 682, 783
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 2 cut(s) 795, 977
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 3 cut(s) 159, 288, 336
MspR9I CCNGG 2 cut(s) 289, 337
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 245
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 2 cut(s) 289, 337
NcoI CCATGG 1 cut(s) 554
NdeII GATC 5 cut(s) 352, 455, 646, 896, 968
NlaIII CATG 6 cut(s) 558, 709, 794, 903, 929, 1043
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 886, 947
NsbI TGCGCA 1 cut(s) 371
NspI RCATGY 1 cut(s) 794
PagI TCATGA 1 cut(s) 925
PctI GAATGC 1 cut(s) 245
PdmI GAANNNNTTC 2 cut(s) 682, 783
PfeI GAWTC 1 cut(s) 683
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 5 cut(s) 191, 349, 359, 364, 583
Ple19I CGATCG 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 563
PspPI GGNCC 1 cut(s) 716
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 968
PvuI CGATCG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 2 cut(s) 795, 977
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 5 cut(s) 190, 348, 358, 363, 582
Sau3AI GATC 5 cut(s) 352, 455, 646, 896, 968
Sau96I GGNCC 1 cut(s) 716
ScrFI CCNGG 2 cut(s) 289, 337
SduI GDGCHC 2 cut(s) 962, 1058
SfaNI GCATC 4 cut(s) 206, 454, 894, 1075
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 795, 977
SmlI CTYRAG 2 cut(s) 65, 406
SmoI CTYRAG 2 cut(s) 65, 406
Sse9I AATT 3 cut(s) 262, 327, 891
SsiI CCGC 8 cut(s) 19, 87, 187, 190, 219, 358, 363, 581
SspMI CTAG 3 cut(s) 653, 665, 966
StyD4I CCNGG 2 cut(s) 287, 335
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 2 cut(s) 594, 860
TaiI ACGT 1 cut(s) 566
TaqI TCGA 2 cut(s) 458, 649
TasI AATT 3 cut(s) 262, 327, 891
TatI WGTACW 1 cut(s) 504
TauI GCSGC 4 cut(s) 192, 360, 365, 584
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 2 cut(s) 726, 984
TseFI GTSAC 2 cut(s) 886, 947
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 886, 947
TspDTI ATGAA 8 cut(s) 552, 722, 755, 792, 894, 929, 1028, 1043
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 2 cut(s) 726, 984
Van91I CCANNNNNTGG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 794
XcmI CCANNNNNNNNNTGG 1 cut(s) 741
XmnI GAANNNNTTC 2 cut(s) 682, 783
XspI CTAG 3 cut(s) 653, 665, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.