Rorug06G0384100

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011407
Physical Location & Seq
Reverse (-)
52968606 .. 52969306
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384100.1

Sequence Viewer

Length: 366 bp
ATGGCCTCCATGTTTAAGTCGTTCATTGTCATTATTCTTTTGAGTCTGATTAGCAAAGGGTATTGTGCTTGCTTGGACAAGATCAACATTTTAACTGCCAGAAGTGGAAGAGAGGTACAAGGCCAACCCGAATGGAACGTAACTGTGACCAACAACTGCCCATGCACTCAAAAGCTCATAAAACTGACGTGCCAGGGGTTTCGGACTGCGGAGCCTGTGAGTCCTTCAATCCTATCCAAAGATGGCGATACGTGCCTCCTCATCAATGGCAATGAACTGCCGGCGGGTAGTTCTGTGTATTTCTCTTATGCTTGGGATCCTCCTATCGTTTTCTGGCCTGAGGATTCAGTTGGTGTAGGTTGCTGA

Protein Analysis

121

Amino Acids

13.18

Weight (kDa)

5.24

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 26 - 107 2.2e-24 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 209, 284
AclWI GGATC 2 cut(s) 311, 324
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 228
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
AlwI GGATC 2 cut(s) 311, 324
AoxI GGCC 3 cut(s) 3, 121, 335
AxyI CCTNAGG 1 cut(s) 339
BamHI GGATCC 1 cut(s) 316
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 213, 318
BmrFI CCNGG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 248
BshFI GGCC 3 cut(s) 5, 123, 337
BsiSI CCGG 1 cut(s) 281
BsnI GGCC 3 cut(s) 5, 123, 337
Bsp143I GATC 2 cut(s) 81, 316
BspACI CCGC 2 cut(s) 209, 284
BspANI GGCC 3 cut(s) 5, 123, 337
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 213, 318
BspPI GGATC 2 cut(s) 311, 324
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 81, 316
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 70, 282
BstDEI CTNAG 1 cut(s) 339
BstKTI GATC 2 cut(s) 84, 319
BstMBI GATC 2 cut(s) 81, 316
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 3 cut(s) 5, 123, 337
BtrI CACGTC 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 70, 282
Cfr10I RCCGGY 1 cut(s) 280
Csp6I GTAC 1 cut(s) 116
CviAII CATG 2 cut(s) 10, 162
CviJI RGCY 5 cut(s) 5, 123, 175, 214, 337
CviKI_1 RGCY 5 cut(s) 5, 123, 175, 214, 337
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 83, 318
DpnII GATC 2 cut(s) 81, 316
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 13, 165
FaiI YATR 4 cut(s) 11, 163, 179, 309
FatI CATG 2 cut(s) 9, 161
FauI CCCGC 1 cut(s) 277
HaeIII GGCC 3 cut(s) 5, 123, 337
HapII CCGG 1 cut(s) 281
Hin1II CATG 2 cut(s) 13, 165
HinfI GANTC 3 cut(s) 43, 220, 344
HpaII CCGG 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 48, 204
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 138, 188, 251
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 3 cut(s) 138, 188, 251
Hsp92II CATG 2 cut(s) 13, 165
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 2 cut(s) 81, 316
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 7 cut(s) 112, 179, 206, 228, 294, 319, 351
MaeII ACGT 3 cut(s) 138, 188, 251
MaeIII GTNAC 2 cut(s) 139, 145
MalI GATC 2 cut(s) 83, 318
MboI GATC 2 cut(s) 81, 316
MboII GAAGA 1 cut(s) 120
MflI RGATCY 1 cut(s) 316
MlyI GAGTC 2 cut(s) 52, 229
MnlI CCTC 6 cut(s) 16, 106, 266, 269, 330, 334
MroNI GCCGGC 1 cut(s) 280
MseI TTAA 2 cut(s) 15, 92
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 252
NaeI GCCGGC 1 cut(s) 282
NdeII GATC 2 cut(s) 81, 316
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 2 cut(s) 13, 165
NlaIV GGNNCC 2 cut(s) 213, 318
NmuCI GTSAC 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 344
PleI GAGTC 2 cut(s) 51, 228
PpsI GAGTC 2 cut(s) 51, 228
Ppu21I YACGTR 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 213, 318
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 15, 92
Sau3AI GATC 2 cut(s) 81, 316
SchI GAGTC 2 cut(s) 52, 229
ScrFI CCNGG 1 cut(s) 194
SetI ASST 6 cut(s) 117, 141, 177, 191, 254, 361
SsiI CCGC 2 cut(s) 209, 284
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 3 cut(s) 141, 191, 254
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 2 cut(s) 15, 92
Tru9I TTAA 2 cut(s) 15, 92
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 13, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.