RchiOBHm_Chr6g0310931

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011407
Physical Location & Seq
Reverse (-)
68099609 .. 68102937
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27960

Sequence Viewer

Length: 1107 bp
ATGCCACTCTTCTCTCACCGCCAGTCTTCCCCTCTCCCCACCACCACCACGTCCTACTCCTCCAAGCTCCTCAAGCCCCTGAAACCCACCTCCGCCTCCGTCCCCACTCGCACTCCCCTGCCCATTATCGTCTTTTCCCTCATCTCCCTCCTCATCGGCCTCGCCGGAACAATCTTCGCCGTCGCCGCCCTCCGCCGCTCCACACCCCTCCCCGTTTTCCGATGCGGCAAATCCGAAGATACTTTCCGAGCATTCTACTCCCTCTCCAATAATCGCAACCTCAACCACAATGCCGGGCTGATTGAACGGCCTAAGCTTCTCGGCTTCGTCGGAATTCAGACCGGGTTCGGGGCAGCTGATCGCCGCGCCGCCCTGCGCACCACTTGGTTTCCTTCCGACCCGGATGGTCTCTTGAGGTTGGAACAAGCTACTGGTTTAGCTTTTAGGTTTGTTATCGGGCGATCGAAAGATGCAAAGAAGATGGCAGAGCTTCAGAAAGAGATAGATAAGTACAGAGACTTTTTGGTGATTGACATCAAGGATGAATATGTAAGCCTTCCATGGAAAACGTTGGAGTTTTTCAAGGCGGCGTTTCAACAGTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATTTATCTACGCCCAGATCGACTAGCAACACTTCTAGCTAAGGAGAGAACAGATTCACGAACCTACATTGGTTGCATGAAGAAAGGTCCAGTGATTACTGACCCAAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGGAATGAATACTTTCAACATGCCTATGCTCCTATTTATGGTCTATCTGCAGAGGTGGTTGTGTCATTGGCAACTGCTAAAAATAACAGTTTGAGAATGTTTAACAATGAAGATGTCACAATTGGATCATGGATGCTTGCCATGAATGTCCATCATGAGGATAATCGTTTTTTATGTGACCCTCGGTGCTCACCTAGATCCATTGCAGTGTGGGACATCCCGAAATGTTCAGGTTTATGCAATCCAGCTATTCGGATGAAAGAGCTTCATGCAATGAGTATGTGCTCCAAAAGTCCAACCCTGCTCCCTACTGATGCTGATGACAGATAG

Protein Analysis

368

Amino Acids

41.43

Weight (kDa)

9.25

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 120 - 314 3.2e-50 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 1 cut(s) 366
AciI CCGC 9 cut(s) 19, 93, 186, 193, 196, 225, 364, 369, 587
AclI AACGTT 1 cut(s) 569
AclWI GGATC 2 cut(s) 910, 969
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 476
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 3 cut(s) 348, 815, 934
AgsI TTSAA 5 cut(s) 305, 583, 596, 605, 794
AjiI CACGTC 1 cut(s) 51
Alw21I GWGCWC 2 cut(s) 968, 1064
Alw26I GTCTC 2 cut(s) 413, 510
AlwI GGATC 2 cut(s) 910, 969
AoxI GGCC 2 cut(s) 157, 308
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 333
Asp700I GAANNNNTTC 2 cut(s) 688, 789
AspLEI GCGC 2 cut(s) 368, 378
AspS9I GGNCC 1 cut(s) 722
AsuC2I CCSGG 3 cut(s) 295, 343, 401
AsuHPI GGTGA 3 cut(s) 8, 538, 960
AvaII GGWCC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 968, 1064
BbvI GCAGC 1 cut(s) 365
BccI CCATC 3 cut(s) 398, 475, 936
BceAI ACGGC 2 cut(s) 164, 323
BcnI CCSGG 3 cut(s) 295, 343, 401
BcoDI GTCTC 2 cut(s) 413, 510
BfaI CTAG 3 cut(s) 659, 671, 972
BfmI CTRYAG 1 cut(s) 825
BisI GCNGC 7 cut(s) 186, 196, 226, 354, 364, 369, 588
BlsI GCNGC 7 cut(s) 187, 197, 227, 355, 365, 370, 589
Bme1390I CCNGG 3 cut(s) 295, 343, 401
Bme18I GGWCC 1 cut(s) 722
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 722
BmrFI CCNGG 3 cut(s) 295, 343, 401
BmsI GCATC 4 cut(s) 212, 460, 900, 1081
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 312, 675
BpuEI CTTGAG 2 cut(s) 56, 433
BpuMI CCSGG 3 cut(s) 295, 343, 401
BsaBI GATNNNNATC 2 cut(s) 533, 639
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 560, 959
BsaXI ACNNNNNCTCC 4 cut(s) 97, 127, 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 348, 815, 934
Bse1I ACTGG 3 cut(s) 22, 436, 725
Bse3DI GCAATG 2 cut(s) 978, 1056
Bse8I GATNNNNATC 2 cut(s) 533, 639
BseDI CCNNGG 2 cut(s) 560, 959
BseGI GGATG 5 cut(s) 409, 547, 915, 993, 1038
BseJI GATNNNNATC 2 cut(s) 533, 639
BseLI CCNNNNNNNGG 3 cut(s) 348, 815, 934
BseMI GCAATG 2 cut(s) 978, 1056
BseNI ACTGG 3 cut(s) 22, 436, 725
BseRI GAGGAG 3 cut(s) 49, 59, 140
BseXI GCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 366
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 2 cut(s) 159, 310
BsiEI CGRYCG 1 cut(s) 464
BsiHKAI GWGCWC 2 cut(s) 968, 1064
BsiSI CCGG 4 cut(s) 165, 294, 342, 401
BslFI GGGAC 2 cut(s) 86, 1004
BslI CCNNNNNNNGG 3 cut(s) 348, 815, 934
BsmAI GTCTC 2 cut(s) 413, 510
BsmFI GGGAC 2 cut(s) 86, 1004
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 159, 310
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 968, 1064
Bsp143I GATC 5 cut(s) 358, 461, 652, 902, 974
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 9 cut(s) 19, 93, 186, 193, 196, 225, 364, 369, 587
BspANI GGCC 2 cut(s) 159, 310
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 931
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 2 cut(s) 910, 969
BspTNI GGTCTC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 2 cut(s) 978, 1056
BsrI ACTGG 3 cut(s) 22, 436, 725
BssECI CCNNGG 2 cut(s) 560, 959
BssMI GATC 5 cut(s) 358, 461, 652, 902, 974
BssT1I CCWWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 600, 866
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 915
BstDEI CTNAG 2 cut(s) 312, 675
BstDSI CCRYGG 1 cut(s) 560
BstF5I GGATG 5 cut(s) 409, 547, 915, 993, 1038
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 2 cut(s) 368, 378
BstKTI GATC 5 cut(s) 361, 464, 655, 905, 977
BstMAI GTCTC 2 cut(s) 413, 510
BstMBI GATC 5 cut(s) 358, 461, 652, 902, 974
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 2 cut(s) 73, 185
BstNSI RCATGY 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 293, 341, 399
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 974
BstYI RGATCY 1 cut(s) 974
BsuRI GGCC 2 cut(s) 159, 310
BtgI CCRYGG 1 cut(s) 560
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 5 cut(s) 409, 547, 915, 993, 1038
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 732, 990
Cac8I GCNNGC 1 cut(s) 915
CciI TCATGA 1 cut(s) 931
CfoI GCGC 2 cut(s) 368, 378
Cfr13I GGNCC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 511
CviAII CATG 7 cut(s) 561, 712, 797, 906, 919, 932, 1046
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 2 cut(s) 312, 675
DpnI GATC 5 cut(s) 360, 463, 654, 904, 976
DpnII GATC 5 cut(s) 358, 461, 652, 902, 974
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 2 cut(s) 82, 182
Eco130I CCWWGG 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 7 cut(s) 564, 715, 800, 909, 922, 935, 1049
FaqI GGGAC 2 cut(s) 86, 1004
FatI CATG 7 cut(s) 560, 711, 796, 905, 918, 931, 1045
Fnu4HI GCNGC 7 cut(s) 186, 196, 226, 354, 364, 369, 588
FokI GGATG 5 cut(s) 416, 554, 922, 980, 1045
Fsp4HI GCNGC 7 cut(s) 186, 196, 226, 354, 364, 369, 588
FspBI CTAG 3 cut(s) 659, 671, 972
FspI TGCGCA 1 cut(s) 377
GlaI GCGC 2 cut(s) 367, 377
GluI GCNGC 7 cut(s) 186, 196, 226, 354, 364, 369, 588
HaeIII GGCC 2 cut(s) 159, 310
HapII CCGG 4 cut(s) 165, 294, 342, 401
HhaI GCGC 2 cut(s) 368, 378
Hin1II CATG 7 cut(s) 564, 715, 800, 909, 922, 935, 1049
Hin6I GCGC 2 cut(s) 366, 376
HinP1I GCGC 2 cut(s) 366, 376
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 689
HpaII CCGG 4 cut(s) 165, 294, 342, 401
HphI GGTGA 3 cut(s) 8, 538, 960
Hpy188I TCNGA 9 cut(s) 221, 235, 248, 332, 339, 397, 495, 774, 1032
Hpy188III TCNNGA 5 cut(s) 412, 693, 765, 932, 997
Hpy99I CGWCG 2 cut(s) 185, 332
HpyAV CCTTC 2 cut(s) 402, 566
HpyCH4III ACNGT 2 cut(s) 600, 866
HpyCH4IV ACGT 2 cut(s) 50, 569
HpyCH4V TGCA 6 cut(s) 473, 711, 827, 983, 1017, 1049
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 185
HpyF3I CTNAG 2 cut(s) 312, 675
HpySE526I ACGT 2 cut(s) 50, 569
Hsp92II CATG 7 cut(s) 564, 715, 800, 909, 922, 935, 1049
HspAI GCGC 2 cut(s) 366, 376
Kzo9I GATC 5 cut(s) 358, 461, 652, 902, 974
LmnI GCTCC 5 cut(s) 72, 203, 811, 1067, 1086
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 4 cut(s) 212, 460, 900, 1081
MaeI CTAG 3 cut(s) 659, 671, 972
MaeII ACGT 2 cut(s) 50, 569
MaeIII GTNAC 2 cut(s) 892, 953
MalI GATC 5 cut(s) 360, 463, 654, 904, 976
MbiI CCGCTC 1 cut(s) 198
MboI GATC 5 cut(s) 358, 461, 652, 902, 974
MboII GAAGA 6 cut(s) 18, 166, 248, 490, 727, 899
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 1 cut(s) 974
MhlI GDGCHC 2 cut(s) 968, 1064
MluCI AATT 2 cut(s) 333, 897
MmeI TCCRAC 5 cut(s) 310, 399, 420, 552, 1097
MroXI GAANNNNTTC 2 cut(s) 688, 789
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 2 cut(s) 801, 983
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 4 cut(s) 165, 294, 342, 401
MspR9I CCNGG 3 cut(s) 295, 343, 401
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 1 cut(s) 251
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 73, 185
NciI CCSGG 3 cut(s) 295, 343, 401
NcoI CCATGG 1 cut(s) 560
NdeII GATC 5 cut(s) 358, 461, 652, 902, 974
NlaIII CATG 7 cut(s) 564, 715, 800, 909, 922, 935, 1049
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 892, 953
NsbI TGCGCA 1 cut(s) 377
NspI RCATGY 1 cut(s) 800
PagI TCATGA 1 cut(s) 931
PcsI WCGNNNNNNNCGW 1 cut(s) 652
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 688, 789
PfeI GAWTC 1 cut(s) 689
PkrI GCNGC 7 cut(s) 187, 197, 227, 355, 365, 370, 589
Ple19I CGATCG 1 cut(s) 464
Psp1406I AACGTT 1 cut(s) 569
PspPI GGNCC 1 cut(s) 722
PstI CTGCAG 1 cut(s) 829
PsuI RGATCY 1 cut(s) 974
PvuI CGATCG 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 2 cut(s) 801, 983
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 7 cut(s) 186, 196, 226, 354, 364, 369, 588
Sau3AI GATC 5 cut(s) 358, 461, 652, 902, 974
Sau96I GGNCC 1 cut(s) 722
ScrFI CCNGG 3 cut(s) 295, 343, 401
SduI GDGCHC 2 cut(s) 968, 1064
SfaNI GCATC 4 cut(s) 212, 460, 900, 1081
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 1 cut(s) 722
SmiMI CAYNNNNRTG 2 cut(s) 801, 983
SmlI CTYRAG 2 cut(s) 71, 412
SmoI CTYRAG 2 cut(s) 71, 412
Sse9I AATT 2 cut(s) 333, 897
SsiI CCGC 9 cut(s) 19, 93, 186, 193, 196, 225, 364, 369, 587
SspMI CTAG 3 cut(s) 659, 671, 972
StyD4I CCNGG 3 cut(s) 293, 341, 399
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 600, 866
TaiI ACGT 2 cut(s) 53, 572
TaqI TCGA 2 cut(s) 464, 655
TasI AATT 2 cut(s) 333, 897
TatI WGTACW 1 cut(s) 510
TauI GCSGC 6 cut(s) 188, 198, 228, 366, 371, 590
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TscAI CASTG 2 cut(s) 732, 990
TseFI GTSAC 2 cut(s) 892, 953
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 2 cut(s) 892, 953
TspDTI ATGAA 8 cut(s) 558, 728, 761, 798, 900, 935, 1034, 1049
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 2 cut(s) 732, 990
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 1 cut(s) 333
XceI RCATGY 1 cut(s) 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 747
XmnI GAANNNNTTC 2 cut(s) 688, 789
XspI CTAG 3 cut(s) 659, 671, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.