FvH4_2g32690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013622
Physical Location & Seq
Reverse (-)
24724268 .. 24726059
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32690.t1

Sequence Viewer

Length: 1065 bp
ATGGCTTCCACAACAACAAAACCAGTTAAACTTGGAGAGCTACTCAGGGAGCAGCAAGAACCCTTTGTCCTAGAGGCTTACCTATTTGAAAGAGGGTGTCTCAGAAAGAGCAATAGCATTAGTTCAAGCAAGAGTTTAAAGAGATCATGTAGTTGGGGACAAAACAAGAGCAAAAAGGGTACTCCTAGCTTCTCCAAGTTACTGAGATCTGTCTATAACAAGCTTGTTTCCAAAAATGGTGGCTCAAGAACCGAGAATTCCGAAAAAGAAGAGGGTAAGTTTGATGCCGACACTGAGATTACTCTTCCTCGAGATTGCCTTGAAGATTCGGATGGACTTTCTTCTTCTAGTAGCAGCAGAACACAGTACGAATCATGCTGTGATAGTGAAAAAGATGAAGCTGTTGCCACAGTTTCATTCCAGAATGAAGATCAAGTCTCGCTTGCAGTAGAAGGAACTTCTCGAATTTCAAATCTCTGCAATATGAAAGTAGAGAGAAAGATAGCACTGCTCAACGGGGAAACATCATCGAAGAAGAAGCAGTCTAAGGAACACACCTCAATTTCAGTACTGGAAGATAGACCTTACCATGCAGTACCCAACAAGGTCATCGAGGAATCCACGTTATCATCTTCTCTGTGGGAACTACTTTTCCAGCCACCATTAGAGAAGCCAAAAGGTACTTCTGGAGTTCCAGAAATTCTAGAGCCGGTGATCAGATCAAATCCTTCTCCACACAAATCGAAAAGGATGTTGCAGCAGACAAGGCAGCTTCTGTTTGATTGTGTAAGAGAGATGACAGAAACTCATGCAAAGCAAATGAAAGAGCAGAACAGCACAAAGTTTTTGGGGGCAGAAGAACTAGGAAAGCTGATTTATCAGAAACTAAGGATTTGGGATAGACAGGCTGGGAATGAGACCAACATCGATTTCTTGTTGGACTCAGACTTCGAAGAATGGAATTGTAATGAACAAGAAGAGATTTGTTGGAAAATTGGGGACGCCATTTTGGAGGACATCGTTGAAGAAATTTGTTGCTCTCCCATTGAGTTTAGATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378

Protein Analysis

355

Amino Acids

40.01

Weight (kDa)

5.4

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 216 - 343 1.5e-06 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32690
malus_domestica MD08G1078600.v1.1 MD15G1065400.v1.1
prunus_persica Prupe.1G419500_v2.0.a1
pyrus_communis pycom08g06500 pycom15g06190
rosa_chinensis RchiOBHm_Chr6g0309981
rosa_laevigata RLG00000010519
rosa_multiflora Rmu_sc0000294.1_g000010
rosa_roxburghii Rroxscaffold_7G00158980
rosa_rugosa Rorug06G0376500 Rorug06G0376600
rosa_samantha Rh6AG490300 Rh6BG499800 Rh6CG504600 Rh6CG504700 Rh6DG490700
rosa_wichuraiana Rw6G042680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 256, 465, 699, 1029
AcyI GRCGYC 1 cut(s) 1002
AfaI GTAC 5 cut(s) 181, 368, 570, 597, 682
AgsI TTSAA 5 cut(s) 89, 126, 323, 471, 1025
AjuI GAANNNNNNNTTGG 4 cut(s) 667, 699, 914, 946
AloI GAACNNNNNNTCC 4 cut(s) 51, 83, 636, 668
AluBI AGCT 6 cut(s) 40, 189, 223, 401, 772, 871
AluI AGCT 6 cut(s) 40, 189, 223, 401, 772, 871
Alw26I GTCTC 3 cut(s) 104, 442, 911
AlwNI CAGNNNCTG 1 cut(s) 775
Ama87I CYCGRG 1 cut(s) 309
ApeKI GCWGC 4 cut(s) 52, 354, 757, 769
ApoI RAATTY 4 cut(s) 256, 465, 699, 1029
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
AsuHPI GGTGA 1 cut(s) 724
AsuII TTCGAA 1 cut(s) 951
AvaI CYCGRG 1 cut(s) 309
BbvI GCAGC 4 cut(s) 64, 366, 769, 781
BccI CCATC 1 cut(s) 326
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 3 cut(s) 104, 442, 911
BfaI CTAG 5 cut(s) 71, 186, 348, 704, 863
BglII AGATCT 1 cut(s) 206
BisI GCNGC 4 cut(s) 53, 355, 758, 770
BlsI GCNGC 4 cut(s) 54, 356, 759, 771
BmcAI AGTACT 1 cut(s) 570
BmeT110I CYCGRG 1 cut(s) 309
BmsI GCATC 1 cut(s) 274
BplI GAGNNNNNCTC 4 cut(s) 27, 59, 84, 116
BpmI CTGGAG 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 927
BsaHI GRCGYC 1 cut(s) 1002
BsaI GGTCTC 1 cut(s) 911
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 2 cut(s) 23, 576
BseCI ATCGAT 1 cut(s) 927
BseGI GGATG 2 cut(s) 337, 756
BseMII CTCAG 5 cut(s) 58, 115, 194, 285, 957
BseNI ACTGG 2 cut(s) 23, 576
BseXI GCAGC 4 cut(s) 64, 366, 769, 781
BseYI CCCAGC 1 cut(s) 908
BshVI ATCGAT 1 cut(s) 927
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 1 cut(s) 710
BslFI GGGAC 2 cut(s) 171, 1013
BsmAI GTCTC 3 cut(s) 104, 442, 911
BsmFI GGGAC 2 cut(s) 171, 1013
Bso31I GGTCTC 1 cut(s) 911
BsoBI CYCGRG 1 cut(s) 309
Bsp119I TTCGAA 1 cut(s) 951
Bsp143I GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
BspCNI CTCAG 5 cut(s) 57, 114, 195, 286, 956
BspDI ATCGAT 1 cut(s) 927
BspT104I TTCGAA 1 cut(s) 951
BspTNI GGTCTC 1 cut(s) 911
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 2 cut(s) 23, 576
BssAI RCCGGY 1 cut(s) 709
BssMI GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
BssNI GRCGYC 1 cut(s) 1002
Bst4CI ACNGT 2 cut(s) 366, 412
Bst6I CTCTTC 3 cut(s) 264, 309, 972
BstACI GRCGYC 1 cut(s) 1002
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 8 cut(s) 44, 101, 203, 294, 546, 887, 943, 1062
BstF5I GGATG 2 cut(s) 337, 756
BstKTI GATC 6 cut(s) 146, 209, 433, 717, 722, 1058
BstMAI GTCTC 3 cut(s) 104, 442, 911
BstMBI GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
BstMWI GCNNNNNNNGC 1 cut(s) 766
BstV1I GCAGC 4 cut(s) 64, 366, 769, 781
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 927
BsuTUI ATCGAT 1 cut(s) 927
BtsCI GGATG 2 cut(s) 337, 756
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 2 cut(s) 291, 506
Cac8I GCNNGC 1 cut(s) 444
CaiI CAGNNNCTG 1 cut(s) 775
Cfr10I RCCGGY 1 cut(s) 709
ClaI ATCGAT 1 cut(s) 927
CseI GACGC 1 cut(s) 1010
Csp6I GTAC 5 cut(s) 180, 367, 569, 596, 681
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 4 cut(s) 147, 375, 590, 809
CviQI GTAC 5 cut(s) 180, 367, 569, 596, 681
DdeI CTNAG 8 cut(s) 44, 101, 203, 294, 546, 887, 943, 1062
DpnI GATC 6 cut(s) 145, 208, 432, 716, 721, 1057
DpnII GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
DraI TTTAAA 1 cut(s) 138
Eam1104I CTCTTC 3 cut(s) 264, 309, 972
EarI CTCTTC 3 cut(s) 264, 309, 972
Eco31I GGTCTC 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 256
FaeI CATG 4 cut(s) 150, 378, 593, 812
FaiI YATR 6 cut(s) 148, 216, 376, 485, 591, 810
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 171, 1013
FatI CATG 4 cut(s) 146, 374, 589, 808
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 4 cut(s) 53, 355, 758, 770
FokI GGATG 2 cut(s) 344, 763
Fsp4HI GCNGC 4 cut(s) 53, 355, 758, 770
FspBI CTAG 5 cut(s) 71, 186, 348, 704, 863
GluI GCNGC 4 cut(s) 53, 355, 758, 770
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 708
HapII CCGG 1 cut(s) 710
HgaI GACGC 1 cut(s) 1010
Hin1I GRCGYC 1 cut(s) 1002
Hin1II CATG 4 cut(s) 150, 378, 593, 812
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 4 cut(s) 326, 371, 617, 941
HpaII CCGG 1 cut(s) 710
HphI GGTGA 1 cut(s) 724
Hpy188I TCNGA 6 cut(s) 104, 262, 331, 719, 882, 946
Hpy188III TCNNGA 7 cut(s) 246, 311, 421, 462, 687, 695, 704
HpyAV CCTTC 2 cut(s) 446, 738
HpyCH4III ACNGT 2 cut(s) 366, 412
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 5 cut(s) 446, 480, 593, 757, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 766
HpyF3I CTNAG 8 cut(s) 44, 101, 203, 294, 546, 887, 943, 1062
HpySE526I ACGT 1 cut(s) 623
Hsp92I GRCGYC 1 cut(s) 1002
Hsp92II CATG 4 cut(s) 150, 378, 593, 812
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 4 cut(s) 64, 366, 769, 781
LweI GCATC 1 cut(s) 274
MaeI CTAG 5 cut(s) 71, 186, 348, 704, 863
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 1 cut(s) 198
MalI GATC 6 cut(s) 145, 208, 432, 716, 721, 1057
MboI GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
MflI RGATCY 1 cut(s) 206
MluCI AATT 7 cut(s) 256, 465, 561, 699, 961, 993, 1029
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 2 cut(s) 918, 968
MnlI CCTC 7 cut(s) 67, 86, 265, 318, 568, 607, 1006
MseI TTAA 2 cut(s) 27, 137
MspI CCGG 1 cut(s) 710
MwoI GCNNNNNNNGC 1 cut(s) 766
NdeII GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
NlaIII CATG 4 cut(s) 150, 378, 593, 812
NspV TTCGAA 1 cut(s) 951
PaeR7I CTCGAG 1 cut(s) 309
PfeI GAWTC 3 cut(s) 326, 371, 617
PkrI GCNGC 4 cut(s) 54, 356, 759, 771
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
PspFI CCCAGC 1 cut(s) 908
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 5 cut(s) 181, 368, 570, 597, 682
RsaNI GTAC 5 cut(s) 180, 367, 569, 596, 681
SaqAI TTAA 2 cut(s) 27, 137
SatI GCNGC 4 cut(s) 53, 355, 758, 770
Sau3AI GATC 6 cut(s) 143, 206, 430, 714, 719, 1055
ScaI AGTACT 1 cut(s) 570
SchI GAGTC 1 cut(s) 935
SfaNI GCATC 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 951
SlaI CTCGAG 1 cut(s) 309
SmlI CTYRAG 2 cut(s) 244, 309
SmoI CTYRAG 2 cut(s) 244, 309
Sse9I AATT 7 cut(s) 256, 465, 561, 699, 961, 993, 1029
SspMI CTAG 5 cut(s) 71, 186, 348, 704, 863
TaaI ACNGT 2 cut(s) 366, 412
TaiI ACGT 1 cut(s) 626
TaqI TCGA 7 cut(s) 310, 463, 530, 612, 743, 927, 951
TasI AATT 7 cut(s) 256, 465, 561, 699, 961, 993, 1029
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 3 cut(s) 326, 371, 617
Tru1I TTAA 2 cut(s) 27, 137
Tru9I TTAA 2 cut(s) 27, 137
TscAI CASTG 2 cut(s) 298, 513
TseI GCWGC 4 cut(s) 52, 354, 757, 769
TspDTI ATGAA 6 cut(s) 405, 411, 441, 500, 836, 984
TspRI CASTG 2 cut(s) 298, 513
XapI RAATTY 4 cut(s) 256, 465, 699, 1029
XbaI TCTAGA 1 cut(s) 703
XhoI CTCGAG 1 cut(s) 309
XspI CTAG 5 cut(s) 71, 186, 348, 704, 863
ZrmI AGTACT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.