Rw6G042680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013622
Physical Location & Seq
Forward (+)
66053603 .. 66054938
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042680.1

Sequence Viewer

Length: 1080 bp
ATGGCTTCCACAACAACAAAACCAGTTAAACAACTTGGAGAGCTTCTCCAAGAGCAGCAAGAACCCTTTGTCCTAGATAGCTTGAGTTCAAGCAATAGCATTAATTCAAGCAAGAGTTTAAAGAGGTCATCTAGTTGTGGACCAATCAAGAGCAAAAAGGGTACTCCTAGCTTCTCCAAGATACTGAGATCTGTCTATAACAAGCTTGTTTCCAAAAATGGTGGCTCGAGAACTAAGAGTTCCGGAAAAGAAGAGGGAAAGTTTGATGCCAACACTGAGATTACTCTTCCTAGTGATTGCCTTGGAGATTTGGATGGATTTTCTTCTTCTAGTAGCAGAACACAGTATGAATCATGCTGTGATAGTGACAAAGATGAAGCTTGCGCCACTGTTTTGTTGCAGAATGAAGATGAAGCCTCGCTTGCAGTAGAAGGCACTTCTCAAGTTCCAAATCTCTGCAATATGAAAGAAGAGACAAAGATAGCACTGCTCAATGGGGAATCATCGAAGAAGAAGAAGAAGACGCAGACTAAGCAACACACCTCAATTTCAGTACTAGAAGATAGACCTTCTCATGCAGGTTTACCTCTTCAGAAATCACCCAACTCCATGTTATCAGCTTCTCTTTGGGAACTACTTTTCCAGCCACCATTGGAGAGGCCAAGAGATACTTTTGGAGTTCAGGAAATGCTAGAGCCGGTAATCAGATCGAATTCTTCTCCACACAAATCGAAAAGGATGTTGCAGCAGACAAGGCAGCTTCTTTTCGATTGTGTGAGAGAGGTGACAGAATCCCATGCAAAGCAAATGAAAGAGGAGCAGAACAGCACAAAGTTTTTGGGGGCAGAAGAACTGGGAAAGCTCATTTCTGAGAAATTAAGGATTTGGGATAGACAGGCTGGGGATGAAACCAACATCGACTTTTTGTTGGATTCAGATATCCTGAGTTCAGCTGAAGAACGCAATTGTAATGAACAAGAAGAGAGAGAGATTTGTTGCGAAATTGGGGACGCCATTTTAGAAGAGATCATCAAAGAAACTGTTGCTCTACCGATTAGTTTAGATCCTGTTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378

Protein Analysis

359

Amino Acids

39.76

Weight (kDa)

5.22

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 236 - 346 1.9e-06 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32690
malus_domestica MD08G1078600.v1.1 MD15G1065400.v1.1
prunus_persica Prupe.1G419500_v2.0.a1
pyrus_communis pycom08g06500 pycom15g06190
rosa_chinensis RchiOBHm_Chr6g0309981
rosa_laevigata RLG00000010519
rosa_multiflora Rmu_sc0000294.1_g000010
rosa_roxburghii Rroxscaffold_7G00158980
rosa_rugosa Rorug06G0376500 Rorug06G0376600
rosa_samantha Rh6AG490300 Rh6BG499800 Rh6CG504600 Rh6CG504700 Rh6DG490700
rosa_wichuraiana Rw6G042680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 569
AccIII TCCGGA 1 cut(s) 242
AclWI GGATC 1 cut(s) 1058
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 2 cut(s) 575, 975
AcyI GRCGYC 1 cut(s) 1011
AfaI GTAC 2 cut(s) 163, 555
AgsI TTSAA 2 cut(s) 90, 108
AloI GAACNNNNNNTCC 4 cut(s) 54, 86, 624, 656
AluBI AGCT 9 cut(s) 43, 81, 171, 205, 380, 620, 760, 862, 953
AluI AGCT 9 cut(s) 43, 81, 171, 205, 380, 620, 760, 862, 953
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 1 cut(s) 1058
Ama87I CYCGRG 1 cut(s) 226
Aor13HI TCCGGA 1 cut(s) 242
AoxI GGCC 1 cut(s) 659
ApeKI GCWGC 3 cut(s) 55, 745, 757
ApoI RAATTY 1 cut(s) 712
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 591, 796
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 527
BbvI GCAGC 3 cut(s) 67, 757, 769
BccI CCATC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 7 cut(s) 74, 132, 168, 291, 330, 557, 692
BfuAI ACCTGC 1 cut(s) 569
BglII AGATCT 1 cut(s) 188
BisI GCNGC 3 cut(s) 56, 746, 758
BlsI GCNGC 3 cut(s) 57, 747, 759
BmcAI AGTACT 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 863
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 527
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpuEI CTTGAG 2 cut(s) 103, 426
BsaHI GRCGYC 1 cut(s) 1011
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 23, 858
BseAI TCCGGA 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 3 cut(s) 319, 744, 910
BseMII CTCAG 4 cut(s) 176, 267, 861, 935
BseNI ACTGG 2 cut(s) 23, 858
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 3 cut(s) 67, 757, 769
BseYI CCCAGC 1 cut(s) 899
BshFI GGCC 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 243, 698
BslFI GGGAC 1 cut(s) 1022
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 1022
BsnI GGCC 1 cut(s) 661
BsoBI CYCGRG 1 cut(s) 226
Bsp13I TCCGGA 1 cut(s) 242
Bsp143I GATC 4 cut(s) 188, 707, 1026, 1063
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 4 cut(s) 177, 268, 862, 936
BspEI TCCGGA 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 569
BspPI GGATC 1 cut(s) 1058
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 2 cut(s) 23, 858
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 188, 707, 1026, 1063
BssNI GRCGYC 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 345, 391, 1042
Bst6I CTCTTC 6 cut(s) 246, 291, 465, 594, 975, 1017
BstACI GRCGYC 1 cut(s) 1011
BstC8I GCNNGC 2 cut(s) 382, 423
BstDEI CTNAG 6 cut(s) 185, 234, 276, 531, 870, 944
BstF5I GGATG 3 cut(s) 319, 744, 910
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 4 cut(s) 191, 710, 1029, 1066
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 4 cut(s) 188, 707, 1026, 1063
BstMWI GCNNNNNNNGC 3 cut(s) 422, 532, 754
BstV1I GCAGC 3 cut(s) 67, 757, 769
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 2 cut(s) 188, 1063
BstYI RGATCY 2 cut(s) 188, 1063
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 3 cut(s) 319, 744, 910
BtsI GCAGTG 1 cut(s) 485
BtsIMutI CAGTG 3 cut(s) 273, 387, 485
BveI ACCTGC 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 382, 423
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 140
CseI GACGC 2 cut(s) 532, 1019
Csp6I GTAC 2 cut(s) 162, 554
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 4 cut(s) 354, 575, 610, 797
CviQI GTAC 2 cut(s) 162, 554
DdeI CTNAG 6 cut(s) 185, 234, 276, 531, 870, 944
DpnI GATC 4 cut(s) 190, 709, 1028, 1065
DpnII GATC 4 cut(s) 188, 707, 1026, 1063
DraI TTTAAA 1 cut(s) 120
Eam1104I CTCTTC 6 cut(s) 246, 291, 465, 594, 975, 1017
EarI CTCTTC 6 cut(s) 246, 291, 465, 594, 975, 1017
Eco130I CCWWGG 1 cut(s) 301
Eco32I GATATC 1 cut(s) 940
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 575, 975
Eco88I CYCGRG 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 712
EcoRV GATATC 1 cut(s) 940
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 4 cut(s) 357, 578, 613, 800
FaiI YATR 7 cut(s) 198, 348, 355, 464, 576, 611, 798
FalI AAGNNNNNCTT 4 cut(s) 405, 437, 655, 687
FaqI GGGAC 1 cut(s) 1022
FatI CATG 4 cut(s) 353, 574, 609, 796
Fnu4HI GCNGC 3 cut(s) 56, 746, 758
FokI GGATG 3 cut(s) 326, 751, 917
Fsp4HI GCNGC 3 cut(s) 56, 746, 758
FspBI CTAG 7 cut(s) 74, 132, 168, 291, 330, 557, 692
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 56, 746, 758
GsaI CCCAGC 1 cut(s) 903
HaeIII GGCC 1 cut(s) 661
HapII CCGG 2 cut(s) 243, 698
HgaI GACGC 2 cut(s) 532, 1019
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 1011
Hin1II CATG 4 cut(s) 357, 578, 613, 800
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 203, 378
HinfI GANTC 4 cut(s) 350, 500, 791, 932
HpaII CCGG 2 cut(s) 243, 698
HphI GGTGA 2 cut(s) 591, 796
Hpy166II GTNNAC 2 cut(s) 140, 584
Hpy188I TCNGA 5 cut(s) 594, 707, 871, 937, 1079
Hpy188III TCNNGA 5 cut(s) 148, 228, 243, 683, 943
Hpy8I GTNNAC 2 cut(s) 140, 584
HpyAV CCTTC 2 cut(s) 425, 579
HpyCH4III ACNGT 3 cut(s) 345, 391, 1042
HpyCH4V TGCA 6 cut(s) 400, 425, 459, 578, 745, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 532, 754
HpyF3I CTNAG 6 cut(s) 185, 234, 276, 531, 870, 944
Hsp92I GRCGYC 1 cut(s) 1011
Hsp92II CATG 4 cut(s) 357, 578, 613, 800
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 242
Kzo9I GATC 4 cut(s) 188, 707, 1026, 1063
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 3 cut(s) 67, 757, 769
LweI GCATC 1 cut(s) 256
MaeI CTAG 7 cut(s) 74, 132, 168, 291, 330, 557, 692
MaeIII GTNAC 2 cut(s) 365, 784
MalI GATC 4 cut(s) 190, 709, 1028, 1065
MboI GATC 4 cut(s) 188, 707, 1026, 1063
MfeI CAATTG 1 cut(s) 964
MflI RGATCY 2 cut(s) 188, 1063
MluCI AATT 6 cut(s) 103, 546, 712, 875, 964, 1002
MmeI TCCRAC 1 cut(s) 909
MnlI CCTC 8 cut(s) 117, 247, 427, 553, 597, 651, 775, 808
MroI TCCGGA 1 cut(s) 242
MseI TTAA 4 cut(s) 27, 102, 119, 878
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 2 cut(s) 243, 698
MunI CAATTG 1 cut(s) 964
MwoI GCNNNNNNNGC 3 cut(s) 422, 532, 754
NdeII GATC 4 cut(s) 188, 707, 1026, 1063
NlaIII CATG 4 cut(s) 357, 578, 613, 800
NmuCI GTSAC 2 cut(s) 365, 784
PaeR7I CTCGAG 1 cut(s) 226
PfeI GAWTC 4 cut(s) 350, 500, 791, 932
PkrI GCNGC 3 cut(s) 57, 747, 759
PshBI ATTAAT 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 899
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 2 cut(s) 188, 1063
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 2 cut(s) 163, 555
RsaNI GTAC 2 cut(s) 162, 554
SaqAI TTAA 4 cut(s) 27, 102, 119, 878
SatI GCNGC 3 cut(s) 56, 746, 758
Sau3AI GATC 4 cut(s) 188, 707, 1026, 1063
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 555
SfaNI GCATC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 226
SmlI CTYRAG 3 cut(s) 82, 226, 441
SmoI CTYRAG 3 cut(s) 82, 226, 441
Sse9I AATT 6 cut(s) 103, 546, 712, 875, 964, 1002
SspMI CTAG 7 cut(s) 74, 132, 168, 291, 330, 557, 692
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 345, 391, 1042
TaqI TCGA 6 cut(s) 227, 506, 710, 731, 768, 918
TasI AATT 6 cut(s) 103, 546, 712, 875, 964, 1002
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 4 cut(s) 350, 500, 791, 932
Tru1I TTAA 4 cut(s) 27, 102, 119, 878
Tru9I TTAA 4 cut(s) 27, 102, 119, 878
TscAI CASTG 3 cut(s) 280, 394, 492
TseFI GTSAC 2 cut(s) 365, 784
TseI GCWGC 3 cut(s) 55, 745, 757
Tsp45I GTSAC 2 cut(s) 365, 784
TspDTI ATGAA 8 cut(s) 363, 390, 420, 426, 479, 824, 921, 987
TspRI CASTG 3 cut(s) 280, 394, 492
VpaK11BI GGWCC 1 cut(s) 140
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 226
XspI CTAG 7 cut(s) 74, 132, 168, 291, 330, 557, 692
ZrmI AGTACT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.