Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013622

Physical Location & Seq

Genomic Coordinates Forward (+)

66652785 .. 66653468

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG504600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTTCCACAACAACAAAACCAGTTAAACAACTTGGAGAGCTTCTCCAAGAGCAGCAAGAACCCTTTGTCCTAGATGTTTACCTATTTGAAAGAGGGTGTCTGAGAAAGAGCTTGAGTTCAAGCAATAGCATTAATTCAAGCAAGAGTTTAAAGAGGTCATCTAGTTGTGGACCAATCAAGAGCAAAAAGGGTACTCCTAGCTTCTCCAAGATACTGAGATCTGTCTATAACAAGCTTGTTTCCAAAAATGGTGGCTCGAGAACTAAGAGTTCCGGAAAAGAAGAGGGAAAGTTTGATGCCAACACTGAGATTACTCTTCCTAGTGATTGCCTTGGAGATTTGGATGGATTTTCTTCTTCAAGTAGCAGAACACAGTATGAATCATGCTGTGATAGTGACAAAGATGAAGCTTGCGCCACTGTTTTGTTGCAGAATGAAGATGAAGCCTCGCTTGCAGTAGAAGGCACTTCTCAAGTTCCAAATCTCTGCAATATGAAAGAAGAGACAAAGGTTGCTACAGATAGCACTGCTCAATGGGGAATCATCAAAGAAGAAGAAGACGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378

Protein Analysis

190

Amino Acids

20.59

Weight (kDa)

5.1

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013622)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32690
malus_domestica	MD08G1078600.v1.1 MD15G1065400.v1.1
prunus_persica	Prupe.1G419500_v2.0.a1
pyrus_communis	pycom08g06500 pycom15g06190
rosa_chinensis	RchiOBHm_Chr6g0309981
rosa_laevigata	RLG00000010519
rosa_multiflora	Rmu_sc0000294.1_g000010
rosa_roxburghii	Rroxscaffold_7G00158980
rosa_rugosa	Rorug06G0376500 Rorug06G0376600
rosa_samantha	Rh6AG490300 Rh6BG499800 Rh6CG504600 Rh6CG504700 Rh6DG490700
rosa_wichuraiana	Rw6G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	275
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	92, 123, 141, 363
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	5 cut(s)	43, 114, 204, 238, 413
AluI	AGCT	5 cut(s)	43, 114, 204, 238, 413
Alw26I	GTCTC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	55
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	4 cut(s)	74, 165, 201, 324
BfmI	CTRYAG	1 cut(s)	519
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	173
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	567
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	2 cut(s)	136, 459
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	95, 209, 300
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	221
BspCNI	CTCAG	3 cut(s)	96, 210, 301
BspEI	TCCGGA	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	378, 424
Bst6I	CTCTTC	3 cut(s)	279, 324, 498
BstC8I	GCNNGC	2 cut(s)	415, 456
BstDEI	CTNAG	4 cut(s)	104, 218, 267, 309
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	306, 420, 528
Cac8I	GCNNGC	2 cut(s)	415, 456
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	8 cut(s)	5, 43, 114, 204, 238, 258, 413, 449
CviKI_1	RGCY	8 cut(s)	5, 43, 114, 204, 238, 258, 413, 449
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	4 cut(s)	104, 218, 267, 309
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	279, 324, 498
EarI	CTCTTC	3 cut(s)	279, 324, 498
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	1 cut(s)	390
FaiI	YATR	4 cut(s)	231, 381, 388, 497
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FatI	CATG	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	4 cut(s)	74, 165, 201, 324
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	1 cut(s)	56
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	236, 411
HinfI	GANTC	2 cut(s)	383, 543
HpaII	CCGG	1 cut(s)	276
Hpy166II	GTNNAC	2 cut(s)	82, 173
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	3 cut(s)	181, 261, 276
Hpy8I	GTNNAC	2 cut(s)	82, 173
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	378, 424
HpyCH4V	TGCA	3 cut(s)	433, 458, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	4 cut(s)	104, 218, 267, 309
Hsp92II	CATG	1 cut(s)	390
HspAI	GCGC	1 cut(s)	417
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	36, 289
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	4 cut(s)	74, 165, 201, 324
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	9 cut(s)	296, 311, 348, 351, 452, 515, 566, 569, 572
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	4 cut(s)	89, 150, 280, 460
MroI	TCCGGA	1 cut(s)	275
MseI	TTAA	3 cut(s)	27, 135, 152
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	383, 543
PkrI	GCNGC	1 cut(s)	57
PshBI	ATTAAT	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	27, 135, 152
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	173
SetI	ASST	8 cut(s)	45, 87, 116, 161, 206, 240, 415, 516
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	3 cut(s)	115, 259, 474
SmoI	CTYRAG	3 cut(s)	115, 259, 474
Sse9I	AATT	1 cut(s)	136
SspMI	CTAG	4 cut(s)	74, 165, 201, 324
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	378, 424
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	383, 543
Tru1I	TTAA	3 cut(s)	27, 135, 152
Tru9I	TTAA	3 cut(s)	27, 135, 152
TscAI	CASTG	3 cut(s)	313, 427, 535
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	5 cut(s)	396, 423, 453, 459, 512
TspRI	CASTG	3 cut(s)	313, 427, 535
VpaK11BI	GGWCC	1 cut(s)	173
VspI	ATTAAT	1 cut(s)	135
XhoI	CTCGAG	1 cut(s)	259
XspI	CTAG	4 cut(s)	74, 165, 201, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.