Prupe.1G419500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013622
Physical Location & Seq
Reverse (-)
36324431 .. 36326502
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G419500.1

Sequence Viewer

Length: 1140 bp
ATGGCTTCCACAATACAGAAGCCAGTAAAACAACTCGCAGAGCTCCTCCAGGAGCAACAAGAACCCTTTGTCCTAGAGGTTTACCTATTTGAAAGAGGGTATCTGAGAAAGAGCTTGAGTTCAAATAGAGAGGGTGGCTCTAGTTTCTGCAAGACTTTTAACAGATCATGCAGTTGGGGCCTAAGGAAGAGCAAGGGTGCTCTCAGCTGTTCCAAAGTACTGAGATCTGTGTATAACAAGCTTGTTTCAAGAAACAGTGGGCCAAGCAATAAGAGTTCTGAAAACAAAGAAGCAGAACTCAATGCCGACACCGAAATGCGCAGAAAGAACCAAGAAATTGTGGATTCAGGTAGATTTTCCTCTGCTAGCAGTAGGACACAGTATGATTCATGCTCGGAGGGTGAGAAGGATGAAGCATCAGTTTCTTTGCAAAATGATCATAAGGCCTCCCTTGCAGCCGACACTTCTCAAGTTTCAAAACCCTGCAATATGATCAAAGAGAGAAAGATAGAACAGTTCAATGGAGGTTCATTGAAGAGTCACCGTAAGCAACAAAACCCCGTTTCAGTACTAAAAGATACACCACCTTCCCATGCAGATGCAGTGCAAGAACTCCCGGCCATGTCAAGAAAAAAGGAAAGTCCATGTCCATCTACTTGTAATTTCAAGCTAGCAGACGACTCAATAGTATCAGCTTCTCTGTGGGAGCTGCTTTTCCAGCCAGCATTAGAGAAGCCAAGAGGGTCTGGAGTTTCAGAAAAGCTAGAGCCAGTCAGGTCTAATATTAATCCTTCCCCTCACTTCGCGAAATCCAAGATGGTGTTGCAGCAAACAAGGCAGCTTCTGTTTGATTGTGTGAGAGAGATGACAGAAACTCATGCAAAGAAAGGGAGAGAAAAGCAGCGAAACTGCAAAGGGTTCCTGGGAGCCGAAGAGATTGGAAACCTGCTTTATGAGAAATTAGGGACATGGGGCAATCAGGCTGGACATGAAGCCTACATAAATTTTGTTTTGGAGTTGGACTTGTTGGGTTCAGCTGAAGAATGGAGTAACAATTACCAAGAAAGAAGGGAAATCGGGAACGAAATCGGCGACACCATTTTAGAAGAGATCATCGAAGAAATTGTTGCTGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378

Protein Analysis

380

Amino Acids

42.47

Weight (kDa)

7.53

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32690
malus_domestica MD08G1078600.v1.1 MD15G1065400.v1.1
prunus_persica Prupe.1G419500_v2.0.a1
pyrus_communis pycom08g06500 pycom15g06190
rosa_chinensis RchiOBHm_Chr6g0309981
rosa_laevigata RLG00000010519
rosa_multiflora Rmu_sc0000294.1_g000010
rosa_roxburghii Rroxscaffold_7G00158980
rosa_rugosa Rorug06G0376500 Rorug06G0376600
rosa_samantha Rh6AG490300 Rh6BG499800 Rh6CG504600 Rh6CG504700 Rh6DG490700
rosa_wichuraiana Rw6G042680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 954
AccII CGCG 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 1003
AcuI CTGAAG 1 cut(s) 1059
AfaI GTAC 2 cut(s) 219, 570
AgsI TTSAA 7 cut(s) 92, 123, 249, 477, 520, 535, 667
AjnI CCWGG 2 cut(s) 48, 921
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
Alw21I GWGCWC 2 cut(s) 45, 202
AlwNI CAGNNNCTG 1 cut(s) 844
AoxI GGCC 4 cut(s) 178, 260, 444, 618
ApeKI GCWGC 5 cut(s) 455, 709, 826, 838, 901
ApoI RAATTY 1 cut(s) 1003
AseI ATTAAT 1 cut(s) 786
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 178, 260
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 2 cut(s) 413, 533
AsuNHI GCTAGC 2 cut(s) 365, 670
AxyI CCTNAGG 1 cut(s) 182
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 45, 202
BbvI GCAGC 5 cut(s) 467, 696, 838, 850, 913
BccI CCATC 2 cut(s) 658, 811
BciT130I CCWGG 2 cut(s) 50, 923
BclI TGATCA 2 cut(s) 436, 492
BcnI CCSGG 1 cut(s) 617
BfaI CTAG 5 cut(s) 74, 141, 366, 671, 764
BfuAI ACCTGC 1 cut(s) 954
BglII AGATCT 1 cut(s) 224
BisI GCNGC 5 cut(s) 456, 710, 827, 839, 902
BlsI GCNGC 5 cut(s) 457, 711, 828, 840, 903
BmcAI AGTACT 2 cut(s) 219, 570
Bme1390I CCNGG 3 cut(s) 50, 617, 923
BmgT120I GGNCC 2 cut(s) 178, 260
BmiI GGNNCC 3 cut(s) 179, 920, 928
BmrFI CCNGG 3 cut(s) 50, 617, 923
BmsI GCATC 2 cut(s) 425, 589
BmtI GCTAGC 2 cut(s) 369, 674
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 32, 768
BpuEI CTTGAG 2 cut(s) 136, 453
BpuMI CCSGG 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 922
Bse1I ACTGG 2 cut(s) 23, 770
Bse21I CCTNAGG 1 cut(s) 182
BseBI CCWGG 2 cut(s) 50, 923
BseDI CCNNGG 1 cut(s) 922
BseGI GGATG 1 cut(s) 415
BseMII CTCAG 3 cut(s) 95, 212, 217
BseNI ACTGG 2 cut(s) 23, 770
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 5 cut(s) 467, 696, 838, 850, 913
Bsh1236I CGCG 1 cut(s) 806
BshFI GGCC 4 cut(s) 180, 262, 446, 620
BsiHKAI GWGCWC 2 cut(s) 45, 202
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 1 cut(s) 979
BsmFI GGGAC 1 cut(s) 979
BsnI GGCC 4 cut(s) 180, 262, 446, 620
Bsp1286I GDGCHC 2 cut(s) 45, 202
Bsp143I GATC 5 cut(s) 164, 224, 436, 492, 1110
Bsp68I TCGCGA 1 cut(s) 806
BspANI GGCC 4 cut(s) 180, 262, 446, 620
BspCNI CTCAG 3 cut(s) 96, 213, 216
BspFNI CGCG 1 cut(s) 806
BspLI GGNNCC 3 cut(s) 179, 920, 928
BspMI ACCTGC 1 cut(s) 954
BspOI GCTAGC 2 cut(s) 369, 674
BspQI GCTCTTC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 23, 770
BssECI CCNNGG 1 cut(s) 922
BssMI GATC 5 cut(s) 164, 224, 436, 492, 1110
Bst2UI CCWGG 2 cut(s) 50, 923
Bst4CI ACNGT 4 cut(s) 257, 381, 516, 545
Bst6I CTCTTC 4 cut(s) 182, 530, 927, 1101
BstC8I GCNNGC 3 cut(s) 367, 672, 723
BstDEI CTNAG 4 cut(s) 104, 182, 203, 221
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 806
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 5 cut(s) 167, 227, 439, 495, 1113
BstMBI GATC 5 cut(s) 164, 224, 436, 492, 1110
BstMWI GCNNNNNNNGC 4 cut(s) 177, 452, 718, 835
BstNI CCWGG 2 cut(s) 50, 923
BstSCI CCNGG 3 cut(s) 48, 615, 921
BstUI CGCG 1 cut(s) 806
BstV1I GCAGC 5 cut(s) 467, 696, 838, 850, 913
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 180, 262, 446, 620
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 262, 609
BtuMI TCGCGA 1 cut(s) 806
BveI ACCTGC 1 cut(s) 954
Cac8I GCNNGC 3 cut(s) 367, 672, 723
CaiI CAGNNNCTG 1 cut(s) 844
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 178, 260
Csp6I GTAC 2 cut(s) 218, 569
CviAII CATG 8 cut(s) 168, 390, 593, 622, 645, 878, 969, 989
CviQI GTAC 2 cut(s) 218, 569
DdeI CTNAG 4 cut(s) 104, 182, 203, 221
DpnI GATC 5 cut(s) 166, 226, 438, 494, 1112
DpnII GATC 5 cut(s) 164, 224, 436, 492, 1110
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 4 cut(s) 182, 530, 927, 1101
EarI CTCTTC 4 cut(s) 182, 530, 927, 1101
Ecl136II GAGCTC 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 1059
Eco81I CCTNAGG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 48, 921
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 8 cut(s) 171, 393, 596, 625, 648, 881, 972, 992
FaqI GGGAC 1 cut(s) 979
FatI CATG 8 cut(s) 167, 389, 592, 621, 644, 877, 968, 988
FbaI TGATCA 2 cut(s) 436, 492
Fnu4HI GCNGC 5 cut(s) 456, 710, 827, 839, 902
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 5 cut(s) 456, 710, 827, 839, 902
FspBI CTAG 5 cut(s) 74, 141, 366, 671, 764
FspI TGCGCA 1 cut(s) 320
GlaI GCGC 1 cut(s) 320
GluI GCNGC 5 cut(s) 456, 710, 827, 839, 902
GsuI CTGGAG 2 cut(s) 32, 768
HaeIII GGCC 4 cut(s) 180, 262, 446, 620
HapII CCGG 1 cut(s) 617
HhaI GCGC 1 cut(s) 321
Hin1II CATG 8 cut(s) 171, 393, 596, 625, 648, 881, 972, 992
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 4 cut(s) 344, 386, 538, 680
HpaII CCGG 1 cut(s) 617
HphI GGTGA 2 cut(s) 413, 533
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 105, 280, 397, 757
Hpy188III TCNNGA 5 cut(s) 249, 627, 747, 805, 1078
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 4 cut(s) 400, 597, 801, 1062
HpyCH4III ACNGT 4 cut(s) 257, 381, 516, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 452, 718, 835
HpyF3I CTNAG 4 cut(s) 104, 182, 203, 221
Hsp92II CATG 8 cut(s) 171, 393, 596, 625, 648, 881, 972, 992
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 436, 492
Kzo9I GATC 5 cut(s) 164, 224, 436, 492, 1110
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 4 cut(s) 48, 52, 706, 926
Lsp1109I GCAGC 5 cut(s) 467, 696, 838, 850, 913
LweI GCATC 2 cut(s) 425, 589
MaeI CTAG 5 cut(s) 74, 141, 366, 671, 764
MaeIII GTNAC 2 cut(s) 539, 1049
MalI GATC 5 cut(s) 166, 226, 438, 494, 1112
MboI GATC 5 cut(s) 164, 224, 436, 492, 1110
MboII GAAGA 6 cut(s) 199, 547, 944, 1052, 1118, 1130
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 45, 202
MluCI AATT 6 cut(s) 336, 661, 959, 1003, 1054, 1122
MlyI GAGTC 2 cut(s) 547, 674
MmeI TCCRAC 1 cut(s) 999
MseI TTAA 2 cut(s) 159, 786
MslI CAYNNNNRTG 2 cut(s) 314, 597
MspA1I CMGCKG 2 cut(s) 207, 1037
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 3 cut(s) 50, 617, 923
MvaI CCWGG 2 cut(s) 50, 923
MvnI CGCG 1 cut(s) 806
MwoI GCNNNNNNNGC 4 cut(s) 177, 452, 718, 835
NciI CCSGG 1 cut(s) 617
NdeII GATC 5 cut(s) 164, 224, 436, 492, 1110
NheI GCTAGC 2 cut(s) 365, 670
NlaIII CATG 8 cut(s) 171, 393, 596, 625, 648, 881, 972, 992
NlaIV GGNNCC 3 cut(s) 179, 920, 928
NmuCI GTSAC 1 cut(s) 539
NruI TCGCGA 1 cut(s) 806
NsbI TGCGCA 1 cut(s) 320
PceI AGGCCT 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 1089
PfeI GAWTC 2 cut(s) 344, 386
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 5 cut(s) 457, 711, 828, 840, 903
PleI GAGTC 2 cut(s) 546, 674
PpsI GAGTC 2 cut(s) 546, 674
PshBI ATTAAT 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 48, 921
PspGI CCWGG 2 cut(s) 48, 921
PspN4I GGNNCC 3 cut(s) 179, 920, 928
PspPI GGNCC 2 cut(s) 178, 260
PstNI CAGNNNCTG 1 cut(s) 844
PsuI RGATCY 1 cut(s) 224
PvuII CAGCTG 2 cut(s) 207, 1037
RruI TCGCGA 1 cut(s) 806
RsaI GTAC 2 cut(s) 219, 570
RsaNI GTAC 2 cut(s) 218, 569
RseI CAYNNNNRTG 2 cut(s) 314, 597
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 159, 786
SatI GCNGC 5 cut(s) 456, 710, 827, 839, 902
Sau3AI GATC 5 cut(s) 164, 224, 436, 492, 1110
Sau96I GGNCC 2 cut(s) 178, 260
ScaI AGTACT 2 cut(s) 219, 570
SchI GAGTC 2 cut(s) 547, 674
ScrFI CCNGG 3 cut(s) 50, 617, 923
SduI GDGCHC 2 cut(s) 45, 202
SfaNI GCATC 2 cut(s) 425, 589
SmiMI CAYNNNNRTG 2 cut(s) 314, 597
SmlI CTYRAG 2 cut(s) 115, 468
SmoI CTYRAG 2 cut(s) 115, 468
Sse9I AATT 6 cut(s) 336, 661, 959, 1003, 1054, 1122
SseBI AGGCCT 1 cut(s) 446
SspI AATATT 1 cut(s) 784
SspMI CTAG 5 cut(s) 74, 141, 366, 671, 764
SstI GAGCTC 1 cut(s) 45
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 3 cut(s) 48, 615, 921
TaaI ACNGT 4 cut(s) 257, 381, 516, 545
TaqI TCGA 1 cut(s) 1116
TasI AATT 6 cut(s) 336, 661, 959, 1003, 1054, 1122
TatI WGTACW 2 cut(s) 217, 568
TfiI GAWTC 2 cut(s) 344, 386
Tru1I TTAA 2 cut(s) 159, 786
Tru9I TTAA 2 cut(s) 159, 786
TscAI CASTG 2 cut(s) 262, 609
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 5 cut(s) 455, 709, 826, 838, 901
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 4 cut(s) 378, 426, 519, 1005
TspRI CASTG 2 cut(s) 262, 609
VspI ATTAAT 1 cut(s) 786
XapI RAATTY 1 cut(s) 1003
XspI CTAG 5 cut(s) 74, 141, 366, 671, 764
ZrmI AGTACT 2 cut(s) 219, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.