Rroxscaffold_7G00158980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013622
Physical Location & Seq
Reverse (-)
2308104 .. 2309604
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158980.1

Sequence Viewer

Length: 1149 bp
ATGTGTTCAATCTCAGCCTCTGCAGCAACACAGAGTTTTCTAATGGCTTCCACAACAACAAAACCAGTTAAACAACTTGGAGAGCTTCTCCAAGAGCAGCAAGAACCCTTTGTCCTAGATGTTTACCTATGTGAAAGAGGGTGTCTGAGAAAGAGCTCGAGTTCAAGTAATAGCATTAATTCAAGCAAGAGTTTAAAGAGATCATCTAGTTGTGGACCAATCAAGAGCAAAAGGAGTACTCCTAGCTTCTCCAAGATACTGAGATCTGTCTATAACAAGCTTGTTTCTAAAAATGGTGGCTCAAGAACTAAGAGTTCCGGAAAAGAAGAGGGAAAGTTTGATGCCAACACTGAGATTACTCTTCCTAGTGATTGCCTTGGAGATTTGGATGGATTTTCTTCTTCTAGTAGCAGAACACAGTATGAATCATGCTGTGATAGTGACAAAGATGAAGCTTGCGCAACTGTTTTGTTGCAGAATGAAGATGAAGCCTCGCTTGCAGTAGAAGGCACTTCTCAAGTTCCAAATCTCTGCAATATGAAAGAAGACACAAAGATAGCACTGCTCAATGGGGAATCATCGAAGAAGAAGAAGCCGCAGTCTAAGCAACACACCTCAATTTCAGTACTAGAAGATAGACCTTCTCATGCAGTACCCAACAAGGTCATGGAAGACTCCATGTTATCAGCTTCTCTTTGGGAACTACTTTTCCAGCCACCATTGGAGAGGCCCAGAGATACTTTTGGAGTTCCGGAGATGCTAGAGCCGGTAATCAGATCGAATTCTTCTCCACACAAATCGAAAAGGAAGTTGCAGCAGACAAGGCAGCTTCTTTTCGATTGTGTGAGAGAGGTGACAGAATCCCATGCAAAGCAAATGAAAGAGGAGCAGAACAGCACAAAGTTTTTGGGGGCAGAAGAACTGGGAAAGCTGATTTCTGAGAAATTAAGGATTTGGGATAGACAGGCTGGGGATGAAACCAACATCGACTTTTTGTTGGATTCAGATATCCTGAGTTCAGCTGAACAATGGAACTGTAATGAACAAGAAGAGAGAGAGATTTGTTGCGAAATTGGGGACGCCATTTTAGAAGAGATCATCAAAGAAACTGTTGCTCTACCGTTTGGTTTAGATCCTGTTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378

Protein Analysis

382

Amino Acids

42.33

Weight (kDa)

5.23

Isoelectric Point (pI)

66.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 265 - 369 4.1e-08 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32690
malus_domestica MD08G1078600.v1.1 MD15G1065400.v1.1
prunus_persica Prupe.1G419500_v2.0.a1
pyrus_communis pycom08g06500 pycom15g06190
rosa_chinensis RchiOBHm_Chr6g0309981
rosa_laevigata RLG00000010519
rosa_multiflora Rmu_sc0000294.1_g000010
rosa_roxburghii Rroxscaffold_7G00158980
rosa_rugosa Rorug06G0376500 Rorug06G0376600
rosa_samantha Rh6AG490300 Rh6BG499800 Rh6CG504600 Rh6CG504700 Rh6DG490700
rosa_wichuraiana Rw6G042680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 460
AccIII TCCGGA 2 cut(s) 317, 751
AciI CCGC 1 cut(s) 596
AclWI GGATC 1 cut(s) 1127
AcsI RAATTY 1 cut(s) 781
AcyI GRCGYC 1 cut(s) 1080
AfaI GTAC 3 cut(s) 238, 627, 654
AgsI TTSAA 3 cut(s) 9, 165, 183
AloI GAACNNNNNNTCC 4 cut(s) 96, 128, 693, 725
AluBI AGCT 9 cut(s) 85, 156, 246, 280, 455, 689, 829, 931, 1022
AluI AGCT 9 cut(s) 85, 156, 246, 280, 455, 689, 829, 931, 1022
Alw21I GWGCWC 1 cut(s) 158
AlwI GGATC 1 cut(s) 1127
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 157
Aor13HI TCCGGA 2 cut(s) 317, 751
AoxI GGCC 1 cut(s) 728
ApeKI GCWGC 4 cut(s) 23, 97, 814, 826
ApoI RAATTY 1 cut(s) 781
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 2 cut(s) 215, 729
AsuHPI GGTGA 1 cut(s) 865
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 552, 678
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 4 cut(s) 35, 109, 826, 838
BccI CCATC 1 cut(s) 383
BfaI CTAG 7 cut(s) 116, 207, 243, 366, 405, 629, 761
BfmI CTRYAG 1 cut(s) 21
BglII AGATCT 1 cut(s) 263
BisI GCNGC 5 cut(s) 24, 98, 596, 815, 827
BlsI GCNGC 5 cut(s) 25, 99, 597, 816, 828
BmcAI AGTACT 2 cut(s) 238, 627
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 215, 729
BmrI ACTGGG 1 cut(s) 932
BmsI GCATC 2 cut(s) 331, 747
BmuI ACTGGG 1 cut(s) 932
BpiI GAAGAC 2 cut(s) 552, 678
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpuEI CTTGAG 2 cut(s) 286, 501
BsaHI GRCGYC 1 cut(s) 1080
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 2 cut(s) 317, 751
Bse118I RCCGGY 1 cut(s) 766
Bse1I ACTGG 2 cut(s) 65, 927
BseAI TCCGGA 2 cut(s) 317, 751
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 394, 979
BseMII CTCAG 6 cut(s) 27, 137, 251, 342, 930, 1004
BseNI ACTGG 2 cut(s) 65, 927
BseRI GAGGAG 1 cut(s) 899
BseXI GCAGC 4 cut(s) 35, 109, 826, 838
BseYI CCCAGC 1 cut(s) 968
BshFI GGCC 1 cut(s) 730
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 3 cut(s) 318, 752, 767
BslFI GGGAC 1 cut(s) 1091
BsmFI GGGAC 1 cut(s) 1091
BsnI GGCC 1 cut(s) 730
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 2 cut(s) 317, 751
Bsp143I GATC 5 cut(s) 200, 263, 776, 1095, 1132
BspACI CCGC 1 cut(s) 596
BspANI GGCC 1 cut(s) 730
BspCNI CTCAG 6 cut(s) 26, 138, 252, 343, 931, 1005
BspEI TCCGGA 2 cut(s) 317, 751
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 1127
BsrFI RCCGGY 1 cut(s) 766
BsrI ACTGG 2 cut(s) 65, 927
BssAI RCCGGY 1 cut(s) 766
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 5 cut(s) 200, 263, 776, 1095, 1132
BssNI GRCGYC 1 cut(s) 1080
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 5 cut(s) 420, 466, 1037, 1111, 1122
Bst6I CTCTTC 4 cut(s) 321, 366, 1044, 1086
BstACI GRCGYC 1 cut(s) 1080
BstC8I GCNNGC 2 cut(s) 457, 498
BstDEI CTNAG 8 cut(s) 13, 146, 260, 309, 351, 603, 939, 1013
BstF5I GGATG 2 cut(s) 394, 979
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 5 cut(s) 203, 266, 779, 1098, 1135
BstMBI GATC 5 cut(s) 200, 263, 776, 1095, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 23, 497, 604, 823
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 4 cut(s) 35, 109, 826, 838
BstV2I GAAGAC 2 cut(s) 552, 678
BstX2I RGATCY 2 cut(s) 263, 1132
BstYI RGATCY 2 cut(s) 263, 1132
BsuRI GGCC 1 cut(s) 730
BtsCI GGATG 2 cut(s) 394, 979
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 2 cut(s) 348, 560
Cac8I GCNNGC 2 cut(s) 457, 498
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 461
Cfr10I RCCGGY 1 cut(s) 766
Cfr13I GGNCC 2 cut(s) 215, 729
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 3 cut(s) 237, 626, 653
CviAII CATG 5 cut(s) 429, 647, 667, 679, 866
CviQI GTAC 3 cut(s) 237, 626, 653
DdeI CTNAG 8 cut(s) 13, 146, 260, 309, 351, 603, 939, 1013
DpnI GATC 5 cut(s) 202, 265, 778, 1097, 1134
DpnII GATC 5 cut(s) 200, 263, 776, 1095, 1132
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 4 cut(s) 321, 366, 1044, 1086
EarI CTCTTC 4 cut(s) 321, 366, 1044, 1086
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 781
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 5 cut(s) 432, 650, 670, 682, 869
FaiI YATR 9 cut(s) 130, 273, 423, 430, 539, 648, 668, 680, 867
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 1 cut(s) 1091
FatI CATG 5 cut(s) 428, 646, 666, 678, 865
Fnu4HI GCNGC 5 cut(s) 24, 98, 596, 815, 827
FokI GGATG 2 cut(s) 401, 986
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 24, 98, 596, 815, 827
FspBI CTAG 7 cut(s) 116, 207, 243, 366, 405, 629, 761
FspI TGCGCA 1 cut(s) 460
GlaI GCGC 1 cut(s) 460
GluI GCNGC 5 cut(s) 24, 98, 596, 815, 827
GsaI CCCAGC 1 cut(s) 972
HaeIII GGCC 1 cut(s) 730
HapII CCGG 3 cut(s) 318, 752, 767
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 1080
Hin1II CATG 5 cut(s) 432, 650, 670, 682, 869
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HindIII AAGCTT 2 cut(s) 278, 453
HinfI GANTC 5 cut(s) 425, 575, 674, 860, 1001
HpaII CCGG 3 cut(s) 318, 752, 767
HphI GGTGA 1 cut(s) 865
Hpy166II GTNNAC 2 cut(s) 124, 215
Hpy188I TCNGA 5 cut(s) 147, 776, 940, 1006, 1148
Hpy188III TCNNGA 5 cut(s) 223, 303, 318, 752, 1012
Hpy8I GTNNAC 2 cut(s) 124, 215
HpyAV CCTTC 2 cut(s) 500, 651
HpyCH4III ACNGT 5 cut(s) 420, 466, 1037, 1111, 1122
HpyCH4V TGCA 7 cut(s) 23, 475, 500, 534, 650, 814, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 497, 604, 823
HpyF3I CTNAG 8 cut(s) 13, 146, 260, 309, 351, 603, 939, 1013
Hsp92I GRCGYC 1 cut(s) 1080
Hsp92II CATG 5 cut(s) 432, 650, 670, 682, 869
HspAI GCGC 1 cut(s) 459
Kpn2I TCCGGA 2 cut(s) 317, 751
Kzo9I GATC 5 cut(s) 200, 263, 776, 1095, 1132
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 4 cut(s) 35, 109, 826, 838
LweI GCATC 2 cut(s) 331, 747
MaeI CTAG 7 cut(s) 116, 207, 243, 366, 405, 629, 761
MaeIII GTNAC 2 cut(s) 440, 853
MalI GATC 5 cut(s) 202, 265, 778, 1097, 1134
MboI GATC 5 cut(s) 200, 263, 776, 1095, 1132
MflI RGATCY 2 cut(s) 263, 1132
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 5 cut(s) 178, 618, 781, 944, 1071
MlyI GAGTC 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 978
MnlI CCTC 8 cut(s) 28, 131, 322, 502, 625, 720, 844, 877
MroI TCCGGA 2 cut(s) 317, 751
MseI TTAA 4 cut(s) 69, 177, 194, 947
MspA1I CMGCKG 1 cut(s) 1022
MspI CCGG 3 cut(s) 318, 752, 767
MwoI GCNNNNNNNGC 4 cut(s) 23, 497, 604, 823
NdeII GATC 5 cut(s) 200, 263, 776, 1095, 1132
NlaIII CATG 5 cut(s) 432, 650, 670, 682, 869
NmuCI GTSAC 2 cut(s) 440, 853
NsbI TGCGCA 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 157
PfeI GAWTC 4 cut(s) 425, 575, 860, 1001
PkrI GCNGC 5 cut(s) 25, 99, 597, 816, 828
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PshBI ATTAAT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 968
PspPI GGNCC 2 cut(s) 215, 729
PspXI VCTCGAGB 1 cut(s) 157
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 263, 1132
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 3 cut(s) 238, 627, 654
RsaNI GTAC 3 cut(s) 237, 626, 653
SacI GAGCTC 1 cut(s) 158
SaqAI TTAA 4 cut(s) 69, 177, 194, 947
SatI GCNGC 5 cut(s) 24, 98, 596, 815, 827
Sau3AI GATC 5 cut(s) 200, 263, 776, 1095, 1132
Sau96I GGNCC 2 cut(s) 215, 729
ScaI AGTACT 2 cut(s) 238, 627
SchI GAGTC 1 cut(s) 668
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 2 cut(s) 331, 747
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 157
SmlI CTYRAG 3 cut(s) 157, 301, 516
SmoI CTYRAG 3 cut(s) 157, 301, 516
Sse9I AATT 5 cut(s) 178, 618, 781, 944, 1071
SsiI CCGC 1 cut(s) 596
SspMI CTAG 7 cut(s) 116, 207, 243, 366, 405, 629, 761
SstI GAGCTC 1 cut(s) 158
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 5 cut(s) 420, 466, 1037, 1111, 1122
TaqI TCGA 6 cut(s) 158, 581, 779, 800, 837, 987
TasI AATT 5 cut(s) 178, 618, 781, 944, 1071
TatI WGTACW 2 cut(s) 236, 625
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 4 cut(s) 425, 575, 860, 1001
Tru1I TTAA 4 cut(s) 69, 177, 194, 947
Tru9I TTAA 4 cut(s) 69, 177, 194, 947
TscAI CASTG 2 cut(s) 355, 567
TseFI GTSAC 2 cut(s) 440, 853
TseI GCWGC 4 cut(s) 23, 97, 814, 826
Tsp45I GTSAC 2 cut(s) 440, 853
TspDTI ATGAA 8 cut(s) 438, 465, 495, 501, 554, 893, 990, 1056
TspRI CASTG 2 cut(s) 355, 567
VpaK11BI GGWCC 1 cut(s) 215
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 157
XspI CTAG 7 cut(s) 116, 207, 243, 366, 405, 629, 761
ZrmI AGTACT 2 cut(s) 238, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.