Rh6CG504700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013622
Physical Location & Seq
Forward (+)
66653649 .. 66654131
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG504700.1

Sequence Viewer

Length: 483 bp
ATGGAAAACTCCATGTTATCAGCTTCTCTTTGGGAACTACTTTTCCAGCCACCATTGGAGAGGCCAAGAGATACTTTTGGAGTTCCAGAAATGCTAGAGCCGGTAATCAGATCGAATTCTTCTCCACACAAATCGAAAAGGATGTTGCAGCAGACAAGGCAGCTTCTTTTCGATTGTGTGAGAGAGGTGACAGAATCCCATGCAAAGCAAATGAAAGAGGAGCAGAACAGCACAAAGTTTTTGGGGGCGGAAGAACTGGGAAAGCTGATTTCTGAGAAATTAAGGATTTGGGATAGACAGGCTGGGGATGAAACCAACATCGACTTTTTGTTGGATTCAGATATCCTGAGTTCAGCTGAAGAATGGAATTGTAATGAACAACAAGAGAGAGAGATTTGCTGCGAAATTGGGGACGCCATTTTAGAAGAGATCATCAAAGAAACTGTTGCTCTACCGTTTAGTTTAGATCCTGTTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378

Protein Analysis

160

Amino Acids

18.44

Weight (kDa)

4.55

Isoelectric Point (pI)

63.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 44 - 147 4.6e-08 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32690
malus_domestica MD08G1078600.v1.1 MD15G1065400.v1.1
prunus_persica Prupe.1G419500_v2.0.a1
pyrus_communis pycom08g06500 pycom15g06190
rosa_chinensis RchiOBHm_Chr6g0309981
rosa_laevigata RLG00000010519
rosa_multiflora Rmu_sc0000294.1_g000010
rosa_roxburghii Rroxscaffold_7G00158980
rosa_rugosa Rorug06G0376500 Rorug06G0376600
rosa_samantha Rh6AG490300 Rh6BG499800 Rh6CG504600 Rh6CG504700 Rh6DG490700
rosa_wichuraiana Rw6G042680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 414
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 4 cut(s) 23, 163, 265, 356
AluI AGCT 4 cut(s) 23, 163, 265, 356
AlwI GGATC 1 cut(s) 461
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 148, 160, 399
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 199
BbvI GCAGC 3 cut(s) 160, 172, 386
BfaI CTAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 149, 161, 400
BlsI GCNGC 3 cut(s) 150, 162, 401
BmrI ACTGGG 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 414
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 147, 313
BseMII CTCAG 2 cut(s) 264, 338
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 3 cut(s) 160, 172, 386
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 3 cut(s) 110, 429, 466
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 265, 339
BspPI GGATC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 3 cut(s) 110, 429, 466
BssNI GRCGYC 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 445, 456
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 273, 347
BstF5I GGATG 2 cut(s) 147, 313
BstKTI GATC 3 cut(s) 113, 432, 469
BstMBI GATC 3 cut(s) 110, 429, 466
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 160, 172, 386
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 147, 313
Cfr10I RCCGGY 1 cut(s) 100
CseI GACGC 1 cut(s) 422
CviAII CATG 2 cut(s) 13, 200
CviJI RGCY 8 cut(s) 23, 49, 64, 100, 163, 265, 302, 356
CviKI_1 RGCY 8 cut(s) 23, 49, 64, 100, 163, 265, 302, 356
DdeI CTNAG 2 cut(s) 273, 347
DpnI GATC 3 cut(s) 112, 431, 468
DpnII GATC 3 cut(s) 110, 429, 466
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 263
Eco32I GATATC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 343
FaeI CATG 2 cut(s) 16, 203
FaiI YATR 2 cut(s) 14, 201
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 1 cut(s) 425
FatI CATG 2 cut(s) 12, 199
Fnu4HI GCNGC 3 cut(s) 149, 161, 400
FokI GGATG 2 cut(s) 154, 320
Fsp4HI GCNGC 3 cut(s) 149, 161, 400
FspBI CTAG 1 cut(s) 95
GluI GCNGC 3 cut(s) 149, 161, 400
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 422
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 2 cut(s) 16, 203
HinfI GANTC 2 cut(s) 194, 335
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 110, 274, 340, 482
Hpy188III TCNNGA 2 cut(s) 86, 346
HpyCH4III ACNGT 2 cut(s) 445, 456
HpyCH4V TGCA 2 cut(s) 148, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 2 cut(s) 273, 347
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 2 cut(s) 16, 203
Kzo9I GATC 3 cut(s) 110, 429, 466
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 7 cut(s) 59, 99, 114, 242, 284, 288, 359
Lsp1109I GCAGC 3 cut(s) 160, 172, 386
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 112, 431, 468
MboI GATC 3 cut(s) 110, 429, 466
MboII GAAGA 4 cut(s) 111, 263, 371, 437
MflI RGATCY 1 cut(s) 466
MluCI AATT 4 cut(s) 115, 278, 367, 405
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 3 cut(s) 54, 178, 211
MseI TTAA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 3 cut(s) 110, 429, 466
NlaIII CATG 2 cut(s) 16, 203
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 194, 335
PkrI GCNGC 3 cut(s) 150, 162, 401
PspFI CCCAGC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 3 cut(s) 149, 161, 400
Sau3AI GATC 3 cut(s) 110, 429, 466
SetI ASST 5 cut(s) 25, 165, 189, 267, 358
Sse9I AATT 4 cut(s) 115, 278, 367, 405
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 445, 456
TaqI TCGA 4 cut(s) 113, 134, 171, 321
TasI AATT 4 cut(s) 115, 278, 367, 405
TfiI GAWTC 2 cut(s) 194, 335
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 3 cut(s) 148, 160, 399
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 227, 324, 390
XapI RAATTY 1 cut(s) 115
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.