Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

28727057 .. 28727899

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACACCATGCTCAAGAAAACACAAGGTCGGAAGAAAATCGAGATTAAGCGGATAGAAAATACGAGCAACAAACAAGTTACCTTCTCAAAGCGCCGCGCCGGATTATTCAAGAAGGCCGGTGAGTTGAGCGTGCTATGTGGCGCTCACATGGCAGTCATCGTGTTCTCTAGTGCCAACAAGGTCTTCTGTTATGGGCACCCCGACATCCATGCAGTGATCGAGAGCTATCAAAATGGTCTCAGCTCTGTAGTCGGAGCTGATGATAAGGCCCAAGAGGTTCTCATCGCCGAGTACAACAAATTGTGTGAGGAGAAGCATAAGGAGGAAGAGGAGTTGAAGAAGAAGATGGCGGAGGCGAAAGCCGAGGCGAGTGAGAAGAAGACGATGATGGAAATGGGAATGACCGGGGTTCAAGTTCTTAATGAGGGGTTTTGGTGGGATGAGCCGGTGGATTTGGTGAGGCTGGAGGAGCGAGAGAGGCAGAAGTACATGATGGCATTGGAAACCTTGAGGAACAAGGTAGCTGATAGGGCTCATCACAAGAAGATTATGAGTGGGACTGTTGCAGGGACATCTCTTCCTCCTGTTCATCGACTTCATATGATGGCACCCGATAATTGTTTCGGTACTGATTTCGGTGATCAATTTGGGAACCATGGTTTTGGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

225

Amino Acids

25.26

Weight (kDa)

8.25

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	18 - 65	6.9e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	198, 610
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	52, 97, 353
AfaI	GTAC	3 cut(s)	296, 491, 631
AgsI	TTSAA	3 cut(s)	112, 340, 416
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	4 cut(s)	228, 246, 260, 527
AluI	AGCT	4 cut(s)	228, 246, 260, 527
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	117, 270
AspLEI	GCGC	3 cut(s)	96, 101, 146
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	3 cut(s)	134, 472, 653
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	2 cut(s)	198, 610
BanII	GRGCYC	1 cut(s)	538
BbsI	GAAGAC	2 cut(s)	178, 389
BccI	CCATC	4 cut(s)	343, 385, 490, 601
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	2 cut(s)	171, 673
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	2 cut(s)	97, 147
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	200, 612, 656
BmrFI	CCNGG	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	178, 389
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	366, 408, 658
Bse118I	RCCGGY	2 cut(s)	119, 448
BseDI	CCNNGG	3 cut(s)	366, 408, 658
BseGI	GGATG	2 cut(s)	207, 448
BseMII	CTCAG	1 cut(s)	256
BseRI	GAGGAG	3 cut(s)	326, 347, 485
BseSI	GKGCMC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	119, 272
BshNI	GGYRCC	2 cut(s)	198, 610
BsiSI	CCGG	4 cut(s)	102, 120, 408, 449
BslFI	GGGAC	2 cut(s)	574, 586
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	2 cut(s)	574, 586
BsnI	GGCC	2 cut(s)	119, 272
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	201, 538
Bsp143I	GATC	2 cut(s)	219, 643
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	3 cut(s)	52, 97, 353
BspANI	GGCC	2 cut(s)	119, 272
BspCNI	CTCAG	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	200, 612, 656
BspT107I	GGYRCC	2 cut(s)	198, 610
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	2 cut(s)	119, 448
BssAI	RCCGGY	2 cut(s)	119, 448
BssECI	CCNNGG	3 cut(s)	366, 408, 658
BssMI	GATC	2 cut(s)	219, 643
BssT1I	CCWWGG	1 cut(s)	658
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	324, 585
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	207, 448
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	2 cut(s)	97, 147
BstHHI	GCGC	3 cut(s)	96, 101, 146
BstKTI	GATC	2 cut(s)	222, 646
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	219, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 472, 481, 533
BstSCI	CCNGG	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	2 cut(s)	178, 389
BstXI	CCANNNNNNTGG	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	119, 272
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	207, 448
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	3 cut(s)	96, 101, 146
Cfr10I	RCCGGY	2 cut(s)	119, 448
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	295, 490, 630
CviAII	CATG	5 cut(s)	10, 151, 212, 493, 659
CviQI	GTAC	3 cut(s)	295, 490, 630
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	2 cut(s)	221, 645
DpnII	GATC	2 cut(s)	219, 643
Eam1104I	CTCTTC	2 cut(s)	324, 585
EarI	CTCTTC	2 cut(s)	324, 585
EciI	GGCGGA	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	538
Eco31I	GGTCTC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	5 cut(s)	13, 154, 215, 496, 662
FaqI	GGGAC	2 cut(s)	574, 586
FatI	CATG	5 cut(s)	9, 150, 211, 492, 658
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	2 cut(s)	194, 455
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	2 cut(s)	171, 673
GlaI	GCGC	3 cut(s)	95, 100, 145
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	2 cut(s)	97, 147
HaeIII	GGCC	2 cut(s)	119, 272
HapII	CCGG	4 cut(s)	102, 120, 408, 449
HhaI	GCGC	3 cut(s)	96, 101, 146
Hin1II	CATG	5 cut(s)	13, 154, 215, 496, 662
Hin6I	GCGC	3 cut(s)	94, 99, 144
HinP1I	GCGC	3 cut(s)	94, 99, 144
HpaII	CCGG	4 cut(s)	102, 120, 408, 449
HphI	GGTGA	3 cut(s)	134, 472, 653
Hpy188I	TCNGA	2 cut(s)	33, 257
Hpy188III	TCNNGA	4 cut(s)	16, 43, 112, 223
HpyAV	CCTTC	2 cut(s)	94, 109
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	2 cut(s)	215, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 472, 481, 533
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	5 cut(s)	13, 154, 215, 496, 662
HspAI	GCGC	3 cut(s)	94, 99, 144
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	219, 643
LmnI	GCTCC	2 cut(s)	257, 472
LpnPI	CCDG	7 cut(s)	115, 133, 421, 452, 462, 555, 600
MaeI	CTAG	2 cut(s)	171, 673
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	221, 645
MboI	GATC	2 cut(s)	219, 643
MhlI	GDGCHC	2 cut(s)	201, 538
MluCI	AATT	3 cut(s)	302, 619, 647
MmeI	TCCRAC	2 cut(s)	11, 235
MseI	TTAA	2 cut(s)	48, 423
MspI	CCGG	4 cut(s)	102, 120, 408, 449
MspR9I	CCNGG	1 cut(s)	409
MteI	GCGCNGCGC	1 cut(s)	97
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	152, 472, 481, 533
NciI	CCSGG	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	658
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	2 cut(s)	219, 643
NlaIII	CATG	5 cut(s)	13, 154, 215, 496, 662
NlaIV	GGNNCC	3 cut(s)	200, 612, 656
NmeAIII	GCCGAG	2 cut(s)	316, 391
PkrI	GCNGC	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	200, 612, 656
PspPI	GGNCC	1 cut(s)	271
RsaI	GTAC	3 cut(s)	296, 491, 631
RsaNI	GTAC	3 cut(s)	295, 490, 630
SaqAI	TTAA	2 cut(s)	48, 423
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	219, 643
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	201, 538
SfcI	CTRYAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	14, 511
SmoI	CTYRAG	2 cut(s)	14, 511
Sse9I	AATT	3 cut(s)	302, 619, 647
SsiI	CCGC	3 cut(s)	52, 97, 353
SspMI	CTAG	2 cut(s)	171, 673
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	42, 222, 595
TasI	AATT	3 cut(s)	302, 619, 647
TatI	WGTACW	2 cut(s)	294, 489
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	48, 423
Tru9I	TTAA	2 cut(s)	48, 423
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	581, 590
TspRI	CASTG	1 cut(s)	222
XspI	CTAG	2 cut(s)	171, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.