Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

33013980 .. 33014663

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCCAAGAAGACTCAAGGTCGCAAGAAAATCGAGATCAAGAAGCTAGAGAACTCTAGCAACAAACAAGTCACCTTCTCCAAACGCCGCTCCGGCCTATTCAAAAAAGCTGGCGAGCTTAGCGTGCTCTGCGGCGCCCATGTGGCCATTATAGTGTTCTCTGGAGCAGGGAAGGCGTTTTGCTATGGACACCCGAACGTCAACGCCGTGCTCGAGAGCTATCAACACGGTCTTACTTCAGTCGTCAGAGCTGATCATGACGAGGCTGCAGGCGATTTGCTGGTGGTGGAGTGCAACAAAGAGTACATGGAGGCGGAGAAGGAGTTTCAGGATTTGAAGAGGAAAGCTACAGAGATCAAACAAACGGCGAATGAGAAGAAGAACATGATGAAGGCAATGAATATCAGTGAAGGGTTTTGGTGGGATGAGGCTGTGGATATGGTAATGATGGATGAACGGGATGGGGAGCAGTACCTCAAGGCGTTGGAGGAGGTGAGAGGAAAGGTGGCTGCTAGGGTTCATGAGTTGAAGATTTTGAATGGGATTATGACTAAGACCGGGCCGTCAATTCCTGAGGTTGATCATCGGCTTAATCATCATATGCCGTTCATGACCGCCGATACTTATTTTGGTAATGGTCAGGATGTCCAATTTGGTTCTGCTTATCATGATTTAGGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

228

Amino Acids

25.5

Weight (kDa)

7.13

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	5.9e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	90
AciI	CCGC	4 cut(s)	88, 132, 314, 615
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	305, 473
AgsI	TTSAA	4 cut(s)	103, 337, 529, 538
AhdI	GACNNNNNGTC	1 cut(s)	18
AluBI	AGCT	6 cut(s)	46, 110, 118, 219, 251, 347
AluI	AGCT	6 cut(s)	46, 110, 118, 219, 251, 347
Alw21I	GWGCWC	2 cut(s)	129, 213
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	3 cut(s)	94, 144, 560
ApeKI	GCWGC	2 cut(s)	266, 509
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	64, 505
AvaI	CYCGRG	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	573
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	129, 213
BbvI	GCAGC	2 cut(s)	253, 496
BccI	CCATC	2 cut(s)	442, 455
BceAI	ACGGC	4 cut(s)	191, 381, 547, 589
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BclI	TGATCA	2 cut(s)	253, 580
BcnI	CCSGG	1 cut(s)	559
BfaI	CTAG	4 cut(s)	47, 57, 513, 682
BfmI	CTRYAG	2 cut(s)	267, 348
BfoI	RGCGCY	1 cut(s)	138
BglI	GCCNNNNNGGC	2 cut(s)	93, 143
BisI	GCNGC	4 cut(s)	88, 133, 267, 510
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	4 cut(s)	89, 134, 268, 511
Bme1390I	CCNGG	1 cut(s)	559
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	559
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	402
BseGI	GGATG	4 cut(s)	430, 457, 466, 649
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	253, 496
BshFI	GGCC	3 cut(s)	96, 146, 562
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	129, 213
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	93, 558
BsnI	GGCC	3 cut(s)	96, 146, 562
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	129, 213
Bsp143I	GATC	4 cut(s)	36, 253, 354, 580
Bsp1720I	GCTNAGC	1 cut(s)	119
BspACI	CCGC	4 cut(s)	88, 132, 314, 615
BspANI	GGCC	3 cut(s)	96, 146, 562
BspCNI	CTCAG	1 cut(s)	565
BspHI	TCATGA	4 cut(s)	256, 520, 609, 667
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	402
BssMI	GATC	4 cut(s)	36, 253, 354, 580
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	112, 116, 125, 271
BstDEI	CTNAG	3 cut(s)	119, 552, 573
BstF5I	GGATG	4 cut(s)	430, 457, 466, 649
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	4 cut(s)	39, 256, 357, 583
BstMBI	GATC	4 cut(s)	36, 253, 354, 580
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 120, 124, 129, 143, 173
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	2 cut(s)	267, 348
BstV1I	GCAGC	2 cut(s)	253, 496
BstV2I	GAAGAC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	96, 146, 562
BtsCI	GGATG	4 cut(s)	430, 457, 466, 649
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	4 cut(s)	112, 116, 125, 271
CciI	TCATGA	4 cut(s)	256, 520, 609, 667
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	304, 472
CviAII	CATG	7 cut(s)	140, 257, 307, 385, 521, 610, 668
CviQI	GTAC	2 cut(s)	304, 472
DdeI	CTNAG	3 cut(s)	119, 552, 573
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	4 cut(s)	38, 255, 356, 582
DpnII	GATC	4 cut(s)	36, 253, 354, 580
DrdI	GACNNNNNNGTC	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	18
DseDI	GACNNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	573
Eco88I	CYCGRG	1 cut(s)	212
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
FaeI	CATG	7 cut(s)	143, 260, 310, 388, 524, 613, 671
FatI	CATG	7 cut(s)	139, 256, 306, 384, 520, 609, 667
FauNDI	CATATG	1 cut(s)	600
FbaI	TGATCA	2 cut(s)	253, 580
Fnu4HI	GCNGC	4 cut(s)	88, 133, 267, 510
FokI	GGATG	4 cut(s)	437, 464, 473, 656
Fsp4HI	GCNGC	4 cut(s)	88, 133, 267, 510
FspBI	CTAG	4 cut(s)	47, 57, 513, 682
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	88, 133, 267, 510
GsuI	CTGGAG	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	96, 146, 562
HapII	CCGG	2 cut(s)	93, 558
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	7 cut(s)	143, 260, 310, 388, 524, 613, 671
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	93, 558
HphI	GGTGA	2 cut(s)	64, 505
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	5 cut(s)	85, 166, 313, 385, 404
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	269, 294
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 120, 124, 129, 143, 173
HpyF3I	CTNAG	3 cut(s)	119, 552, 573
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	7 cut(s)	143, 260, 310, 388, 524, 613, 671
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	253, 580
Kzo9I	GATC	4 cut(s)	36, 253, 354, 580
LmnI	GCTCC	3 cut(s)	95, 164, 466
Lsp1109I	GCAGC	2 cut(s)	253, 496
MaeI	CTAG	4 cut(s)	47, 57, 513, 682
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	38, 255, 356, 582
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	4 cut(s)	36, 253, 354, 580
MboII	GAAGA	5 cut(s)	22, 349, 388, 391, 541
MhlI	GDGCHC	2 cut(s)	129, 213
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	2 cut(s)	567, 650
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	9 cut(s)	256, 304, 333, 421, 481, 484, 485, 491, 568
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	2 cut(s)	93, 558
MspR9I	CCNGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	6 cut(s)	93, 120, 124, 129, 143, 173
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	559
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	4 cut(s)	36, 253, 354, 580
NlaIII	CATG	7 cut(s)	143, 260, 310, 388, 524, 613, 671
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	4 cut(s)	256, 520, 609, 667
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 210
PkrI	GCNGC	4 cut(s)	89, 134, 268, 511
PleI	GAGTC	1 cut(s)	7
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	305, 473
RsaNI	GTAC	2 cut(s)	304, 472
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	4 cut(s)	88, 133, 267, 510
Sau3AI	GATC	4 cut(s)	36, 253, 354, 580
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	559
SduI	GDGCHC	2 cut(s)	129, 213
SfcI	CTRYAG	2 cut(s)	267, 348
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	3 cut(s)	15, 212, 476
SmoI	CTYRAG	3 cut(s)	15, 212, 476
Sse9I	AATT	2 cut(s)	567, 650
SsiI	CCGC	4 cut(s)	88, 132, 314, 615
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	4 cut(s)	47, 57, 513, 682
StyD4I	CCNGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	33, 213
TasI	AATT	2 cut(s)	567, 650
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	90, 135
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	266, 509
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	404, 413, 468, 509, 598
TspRI	CASTG	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	212
XspI	CTAG	4 cut(s)	47, 57, 513, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.