Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Forward (+)

61300833 .. 61301498

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCCAAGAAAACCCAAGGCCGGAAGAAAATCGAGATTAAGCGGATAGAGAATTCGAGCAATAAACAAGTCACCTTCTCAAAGCGCCGCGCCGGCATATTCAAGAAGGCTGGCGAGTTAAGCGTGCTATGTGGCGCGCACATGGCAGTCATCGTGTTCTCTAGTGCCAACAAGGTGTTCTGTTATGGGCACCCAGACATTCATGCAGTGATCGAGAGTTATCAAAATGGGCTCAACTCTGTAGTCGGAGCTGATGATAAGGCCCAGGAGGTTCTCATGGCGGAGTACAACAAAGAGTGCGAGGAGAAGCATAAGGAGGAAGGGGAGTTGAAGAAGAAGATGGCGGAGATGAAAGCCAAGGCAAATGAGAAGAAGATGATGATGGAAATGAGCACGAGCGGGAATCAGGTGCGTGAGGGGTTTTGGTGGGATGAGCCGGTGGATTTGGTCATGCTGGAGGAGCGAGAGAGGGAGCAGTACATGATGGCATTGGAAACCTTGAGGAACAAGGTAGCTGATAAGGCTCATCACAAGAAAATTTTGAGTGGGACTATTGCCGAGACATCAGTTCCGGCTGTTCATCGACTCTATCATATGATGACACCCAATAATTGTTTTGGTACTGGTTTCGGCGATCAATATGGGAACCATGGTTTTGGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

221

Amino Acids

25.05

Weight (kDa)

8.74

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	9.6e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	399
AccII	CGCG	2 cut(s)	90, 137
AciI	CCGC	5 cut(s)	43, 88, 281, 344, 399
AcsI	RAATTY	2 cut(s)	52, 537
AfaI	GTAC	3 cut(s)	287, 479, 622
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	103, 331
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	2 cut(s)	251, 515
AluI	AGCT	2 cut(s)	251, 515
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	554
AoxI	GGCC	2 cut(s)	19, 261
ApoI	RAATTY	2 cut(s)	52, 537
AspLEI	GCGC	4 cut(s)	87, 92, 137, 139
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	395
BccI	CCATC	3 cut(s)	334, 376, 478
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	191, 647
BmrFI	CCNGG	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	520
BsaJI	CCNNGG	4 cut(s)	16, 264, 357, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	2 cut(s)	92, 436
Bse1I	ACTGG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	4 cut(s)	16, 264, 357, 649
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	628
BsePI	GCGCGC	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	317, 473
BseSI	GKGCMC	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	90, 137
BshFI	GGCC	2 cut(s)	21, 263
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	4 cut(s)	22, 93, 437, 572
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	21, 263
Bsp1286I	GDGCHC	3 cut(s)	192, 234, 395
Bsp143I	GATC	2 cut(s)	210, 634
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	5 cut(s)	43, 88, 281, 344, 399
BspANI	GGCC	2 cut(s)	21, 263
BspFNI	CGCG	2 cut(s)	90, 137
BspLI	GGNNCC	2 cut(s)	191, 647
BspT107I	GGYRCC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	399
BsrFI	RCCGGY	2 cut(s)	92, 436
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	2 cut(s)	92, 436
BssECI	CCNNGG	4 cut(s)	16, 264, 357, 649
BssHII	GCGCGC	1 cut(s)	135
BssMI	GATC	2 cut(s)	210, 634
BssSI	CACGAG	1 cut(s)	394
BssT1I	CCWWGG	3 cut(s)	16, 357, 649
Bst2BI	CACGAG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	94, 112, 125, 137
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	2 cut(s)	90, 137
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	4 cut(s)	87, 92, 137, 139
BstKTI	GATC	2 cut(s)	213, 637
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	210, 634
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 120, 143, 460, 521
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	2 cut(s)	90, 137
BstXI	CCANNNNNNTGG	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	21, 263
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	94, 112, 125, 137
CfoI	GCGC	4 cut(s)	87, 92, 137, 139
Cfr10I	RCCGGY	2 cut(s)	92, 436
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	286, 478, 621
CviAII	CATG	6 cut(s)	142, 203, 277, 451, 481, 650
CviQI	GTAC	3 cut(s)	286, 478, 621
DpnI	GATC	2 cut(s)	212, 636
DpnII	GATC	2 cut(s)	210, 634
EciI	GGCGGA	2 cut(s)	296, 359
Eco130I	CCWWGG	3 cut(s)	16, 357, 649
Eco24I	GRGCYC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	3 cut(s)	16, 357, 649
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	3 cut(s)	16, 357, 649
FaeI	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	6 cut(s)	141, 202, 276, 450, 480, 649
FauI	CCCGC	1 cut(s)	392
FauNDI	CATATG	1 cut(s)	594
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	4 cut(s)	86, 91, 136, 138
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	21, 263
HapII	CCGG	4 cut(s)	22, 93, 437, 572
HhaI	GCGC	4 cut(s)	87, 92, 137, 139
Hin1II	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
Hin6I	GCGC	4 cut(s)	85, 90, 135, 137
HinP1I	GCGC	4 cut(s)	85, 90, 135, 137
HinfI	GANTC	2 cut(s)	403, 585
HpaII	CCGG	4 cut(s)	22, 93, 437, 572
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	3 cut(s)	34, 103, 214
HpyAV	CCTTC	3 cut(s)	85, 100, 314
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 120, 143, 460, 521
Hsp92II	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
HspAI	GCGC	4 cut(s)	85, 90, 135, 137
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	210, 634
LmnI	GCTCC	3 cut(s)	248, 460, 472
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	212, 636
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	2 cut(s)	210, 634
MboII	GAAGA	6 cut(s)	37, 343, 346, 349, 382, 385
MhlI	GDGCHC	3 cut(s)	192, 234, 395
MluCI	AATT	3 cut(s)	52, 537, 610
MlyI	GAGTC	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	262, 295, 310, 409, 451, 462, 495
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	2 cut(s)	39, 119
MspI	CCGG	4 cut(s)	22, 93, 437, 572
MspR9I	CCNGG	1 cut(s)	266
MteI	GCGCNGCGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	90, 137
MwoI	GCNNNNNNNGC	5 cut(s)	93, 120, 143, 460, 521
NaeI	GCCGGC	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	649
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	2 cut(s)	210, 634
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
NlaIV	GGNNCC	2 cut(s)	191, 647
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	70
PauI	GCGCGC	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	191, 647
PspPI	GGNCC	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	135
RsaI	GTAC	3 cut(s)	287, 479, 622
RsaNI	GTAC	3 cut(s)	286, 478, 621
SaqAI	TTAA	2 cut(s)	39, 119
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	210, 634
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	3 cut(s)	192, 234, 395
SetI	ASST	8 cut(s)	77, 177, 253, 273, 411, 500, 513, 517
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	3 cut(s)	52, 537, 610
SsiI	CCGC	5 cut(s)	43, 88, 281, 344, 399
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	3 cut(s)	16, 357, 649
TaqI	TCGA	4 cut(s)	33, 56, 213, 583
TasI	AATT	3 cut(s)	52, 537, 610
TatI	WGTACW	2 cut(s)	285, 477
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	39, 119
Tru9I	TTAA	2 cut(s)	39, 119
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	191, 365, 569
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	2 cut(s)	52, 537
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.