Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

68376025 .. 68376693

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG449700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCCAAGAAGACCCAAGGCCGCAAGAAAATTGAGATCAAGAAGCTAGAGAACTCTAGCAACAAACAAGTCACATTCTCAAAACGCCGCGCCGGCATATTCAAAAAAGCTGGCGAGCTTAGTGTGCTTTGTGGCGCCCATGTGGCAATTATAGTGTTCTCTGGCGCAGGGAAGGTGTTTTGCTATGGACACCCGAACATCAACATGGTGCTCGAGAGCTATCAAAACGGTCTTAGTTCAGTCGTCAGAGTTAATGAGGAGGCTGGCGATTTGCTGGTAGCGGAGTTCAACAAAGAGTACGTGGAGGCGGAGAAGGAGTTTGAGGATTTGAAGAGGAAAGCCACGGGGATTAAACAGATGGCGGATGAGAAGAAGAAGATGATGAAGAAAATGAACATGAGTGAGGGGTTTTGGTGGGATGAGGCTGTGGATTTGGCAATGATGGATGAACGGGAAGGGGAGCAGTATTTCAAGGCGTTGGAAGAGCTAAGGCGAAAGGTGGCTGCTAGGGTTGATGAGTTGAAGATTTTGAATGGGACTATGATGGGGCCGCCGGTCCCGGCGGTTCATCATCGACTTTGTCATGTGCCGTTCATGACCACCAATAATCGTTTTGGTAATTGTCAGGACGTCCAATTTGGTTCTGGTTATCATGATTTAGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

222

Amino Acids

25.14

Weight (kDa)

8.92

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	3.4e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	90
AciI	CCGC	7 cut(s)	22, 88, 281, 308, 362, 551, 563
AcyI	GRCGYC	2 cut(s)	135, 630
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	6 cut(s)	103, 289, 331, 472, 523, 532
AluBI	AGCT	5 cut(s)	46, 110, 118, 219, 487
AluI	AGCT	5 cut(s)	46, 110, 118, 219, 487
Alw21I	GWGCWC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	19, 548
ApeKI	GCWGC	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
AspLEI	GCGC	3 cut(s)	92, 137, 167
AspS9I	GGNCC	2 cut(s)	548, 556
AsuC2I	CCSGG	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	3 cut(s)	352, 436, 538
BceAI	ACGGC	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	560
BfaI	CTAG	3 cut(s)	47, 57, 507
BfoI	RGCGCY	1 cut(s)	138
BglI	GCCNNNNNGGC	2 cut(s)	93, 143
BisI	GCNGC	4 cut(s)	22, 88, 504, 551
BlsI	GCNGC	4 cut(s)	23, 89, 505, 552
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	548, 556
BmiI	GGNNCC	3 cut(s)	136, 549, 558
BmrFI	CCNGG	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	301
BsaHI	GRCGYC	2 cut(s)	135, 630
BsaJI	CCNNGG	2 cut(s)	16, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bse118I	RCCGGY	2 cut(s)	92, 553
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	16, 342
BseGI	GGATG	3 cut(s)	370, 424, 451
BseMI	GCAATG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	21, 550
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	93, 554, 560
BslFI	GGGAC	2 cut(s)	542, 550
BsmFI	GGGAC	2 cut(s)	542, 550
BsnI	GGCC	2 cut(s)	21, 550
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	7 cut(s)	22, 88, 281, 308, 362, 551, 563
BspANI	GGCC	2 cut(s)	21, 550
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	2 cut(s)	594, 652
BspLI	GGNNCC	3 cut(s)	136, 549, 558
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	2 cut(s)	92, 553
BssAI	RCCGGY	2 cut(s)	92, 553
BssECI	CCNNGG	2 cut(s)	16, 342
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	2 cut(s)	135, 630
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	326, 477
BstACI	GRCGYC	2 cut(s)	135, 630
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	94, 112, 116, 265
BstDEI	CTNAG	3 cut(s)	119, 233, 488
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	370, 424, 451
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	3 cut(s)	92, 137, 167
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
BstSCI	CCNGG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	21, 550
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	370, 424, 451
Cac8I	GCNNGC	4 cut(s)	94, 112, 116, 265
CciI	TCATGA	2 cut(s)	594, 652
CfoI	GCGC	3 cut(s)	92, 137, 167
Cfr10I	RCCGGY	2 cut(s)	92, 553
Cfr13I	GGNCC	2 cut(s)	548, 556
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	6 cut(s)	140, 205, 397, 584, 595, 653
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	119, 233, 488
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	326, 477
EarI	CTCTTC	2 cut(s)	326, 477
EciI	GGCGGA	2 cut(s)	323, 377
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	6 cut(s)	143, 208, 400, 587, 598, 656
FaqI	GGGAC	2 cut(s)	542, 550
FatI	CATG	6 cut(s)	139, 204, 396, 583, 594, 652
Fnu4HI	GCNGC	4 cut(s)	22, 88, 504, 551
FokI	GGATG	3 cut(s)	377, 431, 458
Fsp4HI	GCNGC	4 cut(s)	22, 88, 504, 551
FspBI	CTAG	3 cut(s)	47, 57, 507
GlaI	GCGC	3 cut(s)	91, 136, 166
GluI	GCNGC	4 cut(s)	22, 88, 504, 551
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	21, 550
HapII	CCGG	3 cut(s)	93, 554, 560
HhaI	GCGC	3 cut(s)	92, 137, 167
Hin1I	GRCGYC	2 cut(s)	135, 630
Hin1II	CATG	6 cut(s)	143, 208, 400, 587, 598, 656
Hin6I	GCGC	3 cut(s)	90, 135, 165
HinP1I	GCGC	3 cut(s)	90, 135, 165
HpaII	CCGG	3 cut(s)	93, 554, 560
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	5 cut(s)	40, 214, 595, 626, 653
HpyAV	CCTTC	3 cut(s)	166, 307, 449
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	300, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
HpyF3I	CTNAG	3 cut(s)	119, 233, 488
HpySE526I	ACGT	2 cut(s)	300, 630
Hsp92I	GRCGYC	2 cut(s)	135, 630
Hsp92II	CATG	6 cut(s)	143, 208, 400, 587, 598, 656
HspAI	GCGC	3 cut(s)	90, 135, 165
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	47, 57, 507
MaeII	ACGT	2 cut(s)	300, 630
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	8 cut(s)	22, 343, 382, 385, 388, 397, 494, 535
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	4 cut(s)	30, 147, 619, 635
Mly113I	GGCGCC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	250, 253, 298, 316, 327, 397, 415
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	3 cut(s)	252, 351, 667
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	3 cut(s)	93, 554, 560
MspR9I	CCNGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
NaeI	GCCGGC	1 cut(s)	94
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	6 cut(s)	143, 208, 400, 587, 598, 656
NlaIV	GGNNCC	3 cut(s)	136, 549, 558
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	2 cut(s)	594, 652
PciSI	GCTCTTC	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	94
PflFI	GACNNNGTC	1 cut(s)	579
PkrI	GCNGC	4 cut(s)	23, 89, 505, 552
PluTI	GGCGCC	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	136, 549, 558
PspPI	GGNCC	2 cut(s)	548, 556
PsyI	GACNNNGTC	1 cut(s)	579
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	252, 351, 667
SatI	GCNGC	4 cut(s)	22, 88, 504, 551
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	2 cut(s)	548, 556
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	9 cut(s)	48, 112, 120, 177, 221, 303, 489, 501, 633
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	30, 147, 619, 635
SsiI	CCGC	7 cut(s)	22, 88, 281, 308, 362, 551, 563
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	3 cut(s)	47, 57, 507
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	303, 633
TaqI	TCGA	2 cut(s)	213, 574
TasI	AATT	4 cut(s)	30, 147, 619, 635
TauI	GCSGC	3 cut(s)	24, 90, 553
Tru1I	TTAA	3 cut(s)	252, 351, 667
Tru9I	TTAA	3 cut(s)	252, 351, 667
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	398, 407, 462, 557, 583
Tth111I	GACNNNGTC	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	212
XspI	CTAG	3 cut(s)	47, 57, 507
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.