Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

17777533 .. 17778379

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G120200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTTATCTTGAGAAAACTTCCCAAGAGGACCCAAGGCCGCAAGAGAATCGAGATCAAGAAGCTCGAGAATCTCAACAACAAGCAAGTCACCTTCTCCAAGCGCCGTTCTGGAATATTCAAAAAGGCGGCGGAGCTGAGCGTTTTGTGCGGCGCTGAGGTGGGAGTCATTGTTTTCTCCACCGCGGGCAAAGTGTTCTGCTACGGGCACCCGAATGTGGAGACAGTGCTAGACTGCTACCGTAGTGGGGTTGCTCCTCCTGCGGTATTTGATGACACAGCAGGAGACCAAAACCCTAATAGAGTGCCCATGGCGGAGTTTAACAAGGAGTACATGGAGGCAATTAAAGAGTTGGAGGAGCAGAAGAGGAGGGTTGTGGAGGTGAAAGAGGAGGTGAGGATGAAGAAGGTGGTGGGTGGGTGTGGTGAGAGGTTTTGGTGGGAGGATGAGAGTGTTGATTTGGATGCGTTAGATGTGCAGGAAGTTGAGCATTACTTGATGTCATTGGAGGATGTGAGGAAGAAGGTGGCTGCTAGGCTTCATGAGGTGAGAATTCTGAATGGGACATTGACACCGAGGGCGCTGCCGCCCGTACCGGCAGTTCATCGGCTTTGTCACATGCCGATGATGACAAATGGTTTTGGTGCTCAGGGTGGACAATTTGGTGGTGGATATCCCGGTTTTGGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

231

Amino Acids

25.8

Weight (kDa)

8.92

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	1 cut(s)	185
AciI	CCGC	9 cut(s)	40, 128, 131, 150, 183, 185, 263, 314, 587
AcsI	RAATTY	1 cut(s)	552
AfaI	GTAC	2 cut(s)	332, 594
AfiI	CCNNNNNNNGG	4 cut(s)	217, 247, 683, 684
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	2 cut(s)	64, 136
AluI	AGCT	2 cut(s)	64, 136
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	215, 279
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	530, 583
ApoI	RAATTY	1 cut(s)	552
AspLEI	GCGC	3 cut(s)	105, 155, 583
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	5 cut(s)	82, 394, 406, 437, 559
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	30
BaeGI	GKGCMC	2 cut(s)	210, 309
BanI	GGYRCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	649
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	517, 570
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 565, 599
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	215, 279
BfaI	CTAG	2 cut(s)	230, 534
BfoI	RGCGCY	3 cut(s)	106, 156, 584
BisI	GCNGC	6 cut(s)	40, 129, 151, 531, 584, 587
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	6 cut(s)	41, 130, 152, 532, 585, 588
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	32, 209
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	1 cut(s)	454
Bpu10I	CCTNAGC	2 cut(s)	156, 648
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	34, 183, 309, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 247, 683, 684
Bse118I	RCCGGY	1 cut(s)	595
BseDI	CCNNGG	4 cut(s)	34, 183, 309, 575
BseGI	GGATG	4 cut(s)	405, 451, 469, 517
BseLI	CCNNNNNNNGG	4 cut(s)	217, 247, 683, 684
BseMII	CTCAG	3 cut(s)	128, 147, 662
BseRI	GAGGAG	4 cut(s)	246, 371, 382, 404
BseSI	GKGCMC	2 cut(s)	210, 309
BseXI	GCAGC	2 cut(s)	517, 570
BsgI	GTGCAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	596, 678
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	4 cut(s)	217, 247, 683, 684
BsmAI	GTCTC	2 cut(s)	215, 279
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	210, 309, 649
Bsp143I	GATC	1 cut(s)	54
Bsp1720I	GCTNAGC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	9 cut(s)	40, 128, 131, 150, 183, 185, 263, 314, 587
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	3 cut(s)	129, 148, 661
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	32, 209
BspT107I	GGYRCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	34, 183, 309, 575
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	34, 309
Bst4CI	ACNGT	2 cut(s)	226, 242
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	137, 156, 648
BstDSI	CCRYGG	2 cut(s)	183, 309
BstF5I	GGATG	4 cut(s)	405, 451, 469, 517
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	3 cut(s)	106, 156, 584
BstHHI	GCGC	3 cut(s)	105, 155, 583
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	215, 279
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 260
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	676
BstSLI	GKGCMC	2 cut(s)	210, 309
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	517, 570
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	183, 309
BtsCI	GGATG	4 cut(s)	405, 451, 469, 517
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	3 cut(s)	105, 155, 583
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	30
Cfr42I	CCGCGG	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	331, 593
CviAII	CATG	4 cut(s)	310, 334, 542, 619
CviJI	RGCY	6 cut(s)	39, 64, 136, 530, 538, 610
CviKI_1	RGCY	6 cut(s)	39, 64, 136, 530, 538, 610
CviQI	GTAC	2 cut(s)	331, 593
DdeI	CTNAG	3 cut(s)	137, 156, 648
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	2 cut(s)	146, 329
Eco130I	CCWWGG	2 cut(s)	34, 309
Eco31I	GGTCTC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	552
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	2 cut(s)	34, 309
ErhI	CCWWGG	2 cut(s)	34, 309
FaeI	CATG	4 cut(s)	313, 337, 545, 622
FaiI	YATR	4 cut(s)	311, 335, 543, 620
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	4 cut(s)	309, 333, 541, 618
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	6 cut(s)	40, 129, 151, 531, 584, 587
FokI	GGATG	4 cut(s)	412, 458, 476, 524
Fsp4HI	GCNGC	6 cut(s)	40, 129, 151, 531, 584, 587
FspBI	CTAG	2 cut(s)	230, 534
GlaI	GCGC	3 cut(s)	104, 154, 582
GluI	GCNGC	6 cut(s)	40, 129, 151, 531, 584, 587
HaeII	RGCGCY	3 cut(s)	106, 156, 584
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	596, 678
HhaI	GCGC	3 cut(s)	105, 155, 583
Hin1II	CATG	4 cut(s)	313, 337, 545, 622
Hin6I	GCGC	3 cut(s)	103, 153, 581
HinP1I	GCGC	3 cut(s)	103, 153, 581
HinfI	GANTC	3 cut(s)	48, 70, 165
HpaII	CCGG	2 cut(s)	596, 678
HphI	GGTGA	5 cut(s)	82, 394, 406, 437, 559
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	1 cut(s)	558
Hpy188III	TCNNGA	6 cut(s)	10, 52, 58, 67, 111, 542
Hpy8I	GTNNAC	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	103, 400, 517
HpyCH4III	ACNGT	2 cut(s)	226, 242
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 260
HpyF3I	CTNAG	3 cut(s)	137, 156, 648
Hsp92II	CATG	4 cut(s)	313, 337, 545, 622
HspAI	GCGC	3 cut(s)	103, 153, 581
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	133, 259, 358
LpnPI	CCDG	6 cut(s)	96, 267, 273, 464, 609, 635
Lsp1109I	GCAGC	2 cut(s)	517, 570
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	230, 534
MaeIII	GTNAC	2 cut(s)	88, 614
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	3 cut(s)	376, 415, 532
MhlI	GDGCHC	3 cut(s)	210, 309, 649
MluCI	AATT	3 cut(s)	342, 552, 659
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	333
MseI	TTAA	2 cut(s)	321, 345
MslI	CAYNNNNRTG	2 cut(s)	213, 623
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	596, 678
MspR9I	CCNGG	1 cut(s)	678
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	147, 260
NciI	CCSGG	1 cut(s)	678
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	4 cut(s)	313, 337, 545, 622
NlaIV	GGNNCC	2 cut(s)	32, 209
NmuCI	GTSAC	2 cut(s)	88, 614
NspI	RCATGY	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	48, 70
PkrI	GCNGC	6 cut(s)	41, 130, 152, 532, 585, 588
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	32, 209
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PsrI	GAACNNNNNNTAC	2 cut(s)	585, 617
RsaI	GTAC	2 cut(s)	332, 594
RsaNI	GTAC	2 cut(s)	331, 593
RseI	CAYNNNNRTG	2 cut(s)	213, 623
SacII	CCGCGG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	321, 345
SatI	GCNGC	6 cut(s)	40, 129, 151, 531, 584, 587
Sau3AI	GATC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	3 cut(s)	210, 309, 649
SfaNI	GCATC	1 cut(s)	454
Sfr274I	CTCGAG	1 cut(s)	65
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	213, 623
SmlI	CTYRAG	2 cut(s)	10, 65
SmoI	CTYRAG	2 cut(s)	10, 65
Sse9I	AATT	3 cut(s)	342, 552, 659
SsiI	CCGC	9 cut(s)	40, 128, 131, 150, 183, 185, 263, 314, 587
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	2 cut(s)	230, 534
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	2 cut(s)	34, 309
TaaI	ACNGT	2 cut(s)	226, 242
TaqI	TCGA	2 cut(s)	51, 66
TasI	AATT	3 cut(s)	342, 552, 659
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	4 cut(s)	42, 131, 153, 589
TfiI	GAWTC	2 cut(s)	48, 70
Tru1I	TTAA	2 cut(s)	321, 345
Tru9I	TTAA	2 cut(s)	321, 345
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	88, 614
TseI	GCWGC	2 cut(s)	530, 583
Tsp45I	GTSAC	2 cut(s)	88, 614
TspDTI	ATGAA	3 cut(s)	416, 530, 593
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	552
XceI	RCATGY	1 cut(s)	622
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	2 cut(s)	230, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.