Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

63090978 .. 63091852

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCCAAGAAGACCCAAGGCCGCAAGAAAATTGAGATCAAGAAGCTAGAGAACTCTAGCAACAAACAAGTCACATTCTCAAAACGCCGTGCCGGCATATTCAAAAAAGCCGGCGAGCTTAGTGTGCTTTGCGGCGCCCATGTGGCCATTATAGTGTTCTCTGGCGCAGGGAAGGTGTTTTGCTATGGACACCCGAACATCAACACGGTGCTCGAGAGCTATCAAAACGGTCTTAGTTCAGTTGTCAGAGTTAATGAGGAGGCTGGCGATTTGCTGGTGGAGGAGTTCAACAAAGAGTACGTGGAGGCAGAGAAGGAGTTTGAGGATTTGAAGAGGAAAGCCACGGGGATTAAACAGATGGCGGATGAGAAGAAGAAGATGATGAAGGAAATGAATATGAGTGAGGGGTTTTGGTGGGATGAGGCTGTAGATTTGGCAATGATGGATGAACGGGAATGGGAGCAGTACTTCAAGGCGTTGGAAGAGCTAAGGCGAAAGGTGGCTGCTAGGGTTGATGAGTTGAAGATTTTGAATGGGACTATGATGGGGCCGCCGGTCCCGGCGGTTCATCATCGGCTTTGTCATGTGCCGTTCATGACCGCCAATAATCGTTTTGGTAATTGTCAGGACGTCCAATTTGGTTCTGGTTATCATGATTTAGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

222

Amino Acids

25.27

Weight (kDa)

8.25

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	3.4e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	6 cut(s)	22, 132, 362, 551, 563, 600
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	135, 630
AfaI	GTAC	2 cut(s)	299, 467
AgsI	TTSAA	6 cut(s)	103, 289, 331, 472, 523, 532
AluBI	AGCT	4 cut(s)	46, 118, 219, 487
AluI	AGCT	4 cut(s)	46, 118, 219, 487
Alw21I	GWGCWC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	3 cut(s)	19, 144, 548
ApeKI	GCWGC	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
AspLEI	GCGC	2 cut(s)	137, 167
AspS9I	GGNCC	2 cut(s)	548, 556
AsuC2I	CCSGG	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	3 cut(s)	352, 436, 538
BceAI	ACGGC	2 cut(s)	72, 574
BcnI	CCSGG	1 cut(s)	560
BfaI	CTAG	3 cut(s)	47, 57, 507
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	138
BglI	GCCNNNNNGGC	2 cut(s)	93, 143
BisI	GCNGC	4 cut(s)	22, 133, 504, 551
BlsI	GCNGC	4 cut(s)	23, 134, 505, 552
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	548, 556
BmiI	GGNNCC	3 cut(s)	136, 549, 558
BmrFI	CCNGG	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	301
BsaHI	GRCGYC	2 cut(s)	135, 630
BsaJI	CCNNGG	2 cut(s)	16, 342
Bse118I	RCCGGY	3 cut(s)	92, 110, 553
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	16, 342
BseGI	GGATG	3 cut(s)	370, 424, 451
BseMI	GCAATG	1 cut(s)	444
BseRI	GAGGAG	2 cut(s)	272, 296
BseXI	GCAGC	1 cut(s)	490
BshFI	GGCC	3 cut(s)	21, 146, 550
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	4 cut(s)	93, 111, 554, 560
BslFI	GGGAC	2 cut(s)	542, 550
BsmFI	GGGAC	2 cut(s)	542, 550
BsnI	GGCC	3 cut(s)	21, 146, 550
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	6 cut(s)	22, 132, 362, 551, 563, 600
BspANI	GGCC	3 cut(s)	21, 146, 550
BspHI	TCATGA	2 cut(s)	594, 652
BspLI	GGNNCC	3 cut(s)	136, 549, 558
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	3 cut(s)	92, 110, 553
BssAI	RCCGGY	3 cut(s)	92, 110, 553
BssECI	CCNNGG	2 cut(s)	16, 342
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	2 cut(s)	135, 630
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	208, 230
Bst6I	CTCTTC	2 cut(s)	326, 477
BstACI	GRCGYC	2 cut(s)	135, 630
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	94, 112, 116, 265
BstDEI	CTNAG	3 cut(s)	119, 233, 488
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	370, 424, 451
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 167
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	21, 146, 550
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	370, 424, 451
Cac8I	GCNNGC	4 cut(s)	94, 112, 116, 265
CciI	TCATGA	2 cut(s)	594, 652
CfoI	GCGC	2 cut(s)	137, 167
Cfr10I	RCCGGY	3 cut(s)	92, 110, 553
Cfr13I	GGNCC	2 cut(s)	548, 556
Csp6I	GTAC	2 cut(s)	298, 466
CviAII	CATG	4 cut(s)	140, 584, 595, 653
CviQI	GTAC	2 cut(s)	298, 466
DdeI	CTNAG	3 cut(s)	119, 233, 488
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	326, 477
EarI	CTCTTC	2 cut(s)	326, 477
EciI	GGCGGA	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	4 cut(s)	143, 587, 598, 656
FaiI	YATR	9 cut(s)	98, 141, 152, 186, 398, 542, 585, 596, 654
FaqI	GGGAC	2 cut(s)	542, 550
FatI	CATG	4 cut(s)	139, 583, 594, 652
Fnu4HI	GCNGC	4 cut(s)	22, 133, 504, 551
FokI	GGATG	3 cut(s)	377, 431, 458
Fsp4HI	GCNGC	4 cut(s)	22, 133, 504, 551
FspBI	CTAG	3 cut(s)	47, 57, 507
GlaI	GCGC	2 cut(s)	136, 166
GluI	GCNGC	4 cut(s)	22, 133, 504, 551
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	21, 146, 550
HapII	CCGG	4 cut(s)	93, 111, 554, 560
HhaI	GCGC	2 cut(s)	137, 167
Hin1I	GRCGYC	2 cut(s)	135, 630
Hin1II	CATG	4 cut(s)	143, 587, 598, 656
Hin6I	GCGC	2 cut(s)	135, 165
HinP1I	GCGC	2 cut(s)	135, 165
HpaII	CCGG	4 cut(s)	93, 111, 554, 560
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	5 cut(s)	40, 214, 595, 626, 653
HpyAV	CCTTC	3 cut(s)	166, 307, 379
HpyCH4III	ACNGT	2 cut(s)	208, 230
HpyCH4IV	ACGT	2 cut(s)	300, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
HpyF3I	CTNAG	3 cut(s)	119, 233, 488
HpySE526I	ACGT	2 cut(s)	300, 630
Hsp92I	GRCGYC	2 cut(s)	135, 630
Hsp92II	CATG	4 cut(s)	143, 587, 598, 656
HspAI	GCGC	2 cut(s)	135, 165
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	2 cut(s)	92, 110
KroNI	GCCGGC	2 cut(s)	94, 112
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	47, 57, 507
MaeII	ACGT	2 cut(s)	300, 630
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	7 cut(s)	22, 343, 382, 385, 388, 494, 535
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	30, 619, 635
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	250, 253, 274, 298, 316, 327, 397, 415
Mox20I	TGGCCA	1 cut(s)	146
MroNI	GCCGGC	2 cut(s)	92, 110
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	252, 351, 667
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	4 cut(s)	93, 111, 554, 560
MspR9I	CCNGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
NaeI	GCCGGC	2 cut(s)	94, 112
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	1 cut(s)	36
NgoMIV	GCCGGC	2 cut(s)	92, 110
NlaIII	CATG	4 cut(s)	143, 587, 598, 656
NlaIV	GGNNCC	3 cut(s)	136, 549, 558
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	2 cut(s)	594, 652
PciSI	GCTCTTC	1 cut(s)	477
PdiI	GCCGGC	2 cut(s)	94, 112
PkrI	GCNGC	4 cut(s)	23, 134, 505, 552
PluTI	GGCGCC	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	136, 549, 558
PspPI	GGNCC	2 cut(s)	548, 556
RsaI	GTAC	2 cut(s)	299, 467
RsaNI	GTAC	2 cut(s)	298, 466
RseI	CAYNNNNRTG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	252, 351, 667
SatI	GCNGC	4 cut(s)	22, 133, 504, 551
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	2 cut(s)	548, 556
ScaI	AGTACT	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	8 cut(s)	48, 120, 177, 221, 303, 489, 501, 633
SfcI	CTRYAG	1 cut(s)	426
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	30, 619, 635
SsiI	CCGC	6 cut(s)	22, 132, 362, 551, 563, 600
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	3 cut(s)	47, 57, 507
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	208, 230
TaiI	ACGT	2 cut(s)	303, 633
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	30, 619, 635
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	3 cut(s)	24, 135, 553
Tru1I	TTAA	3 cut(s)	252, 351, 667
Tru9I	TTAA	3 cut(s)	252, 351, 667
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	398, 407, 462, 557, 583
VpaK11BI	GGWCC	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	212
XspI	CTAG	3 cut(s)	47, 57, 507
ZraI	GACGTC	1 cut(s)	631
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.