Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

64941297 .. 64941965

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTCCAAGAAGACCCAAGGCCGCAAGAAAATTGAGATCAAGAAGCTAGAGAACTCTAGCAACAAACAAGTCACATTCTCAAAACGCCGCGCCGGCATATTCAAAAAAGCCGGCGAGCTTAGTGTGCTTTGCGGCGCCCATGTGGCCATTATAGTGTTCTCTGGCGCAGGAAAGGTGTTTTGCTATGGACACCCAAACATCAACACTGTGCTCGAGAGCTATCAAAACGGTCTTAGTTCAGTCGTCAGAGTTAATGAGGAGGCTGGCAATTTGTTGGTGGCGGAGTTCAACAAAGAGTACGTGGAGGCGGAGAAGGAGTTTGAGGATTTGAAGAGGAAAGCCACGGGGATTAAACAGATGGCGGATGAGAAGAAGAAGATGATGAAGGAAATGAATATGAGTGAGGGGTTTTGGTGGGATGAGGTTGTGGATTTGGCAATGATGGATGAACGGGAAGGGGAGCAGTACTTCAAGGCATTGGAAGAGCTAAGGCTAAAGGTGGCTGCTAGGGTTGATGAGTTGAAGATTTTGAATGGGACTATGATGGGGCCACCGGTCCCGACGTTTCATCATCGGCTTTGTCATGTGCCGTTCATGATCGCCAATAATCGTTTTGGTAATTGTCAAGACGTCCAATATAGTTCTGGTTATCATGATTTAGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

222

Amino Acids

25.2

Weight (kDa)

8.55

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	3.4e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	134
AccII	CGCG	1 cut(s)	90
AciI	CCGC	6 cut(s)	22, 88, 132, 281, 308, 362
AcoI	YGGCCR	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	135, 630
AfaI	GTAC	2 cut(s)	299, 467
AgeI	ACCGGT	1 cut(s)	553
AgsI	TTSAA	6 cut(s)	103, 289, 331, 472, 523, 532
AluBI	AGCT	4 cut(s)	46, 118, 219, 487
AluI	AGCT	4 cut(s)	46, 118, 219, 487
Alw21I	GWGCWC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	3 cut(s)	19, 144, 548
ApeKI	GCWGC	1 cut(s)	503
AsiGI	ACCGGT	1 cut(s)	553
AspLEI	GCGC	3 cut(s)	92, 137, 167
AspS9I	GGNCC	2 cut(s)	548, 556
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	3 cut(s)	352, 436, 538
BceAI	ACGGC	1 cut(s)	574
BfaI	CTAG	3 cut(s)	47, 57, 507
BfoI	RGCGCY	1 cut(s)	138
BglI	GCCNNNNNGGC	2 cut(s)	93, 143
BisI	GCNGC	4 cut(s)	22, 88, 133, 504
BlsI	GCNGC	4 cut(s)	23, 89, 134, 505
BmcAI	AGTACT	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	548, 556
BmiI	GGNNCC	3 cut(s)	136, 549, 558
BpiI	GAAGAC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	301
BsaHI	GRCGYC	2 cut(s)	135, 630
BsaJI	CCNNGG	2 cut(s)	16, 342
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bse118I	RCCGGY	3 cut(s)	92, 110, 553
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	16, 342
BseGI	GGATG	3 cut(s)	370, 424, 451
BseMI	GCAATG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	21, 146, 550
BshNI	GGYRCC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	553
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	93, 111, 554
BslFI	GGGAC	2 cut(s)	542, 550
BsmFI	GGGAC	2 cut(s)	542, 550
BsnI	GGCC	3 cut(s)	21, 146, 550
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	36, 597
BspACI	CCGC	6 cut(s)	22, 88, 132, 281, 308, 362
BspANI	GGCC	3 cut(s)	21, 146, 550
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	2 cut(s)	594, 652
BspLI	GGNNCC	3 cut(s)	136, 549, 558
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	3 cut(s)	92, 110, 553
BssAI	RCCGGY	3 cut(s)	92, 110, 553
BssECI	CCNNGG	2 cut(s)	16, 342
BssMI	GATC	2 cut(s)	36, 597
BssNI	GRCGYC	2 cut(s)	135, 630
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	208, 230
Bst6I	CTCTTC	2 cut(s)	326, 477
BstACI	GRCGYC	2 cut(s)	135, 630
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	94, 112, 116, 265
BstDEI	CTNAG	3 cut(s)	119, 233, 488
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	370, 424, 451
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	3 cut(s)	92, 137, 167
BstKTI	GATC	2 cut(s)	39, 600
BstMBI	GATC	2 cut(s)	36, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	21, 146, 550
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	370, 424, 451
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	4 cut(s)	94, 112, 116, 265
CciI	TCATGA	2 cut(s)	594, 652
CfoI	GCGC	3 cut(s)	92, 137, 167
Cfr10I	RCCGGY	3 cut(s)	92, 110, 553
Cfr13I	GGNCC	2 cut(s)	548, 556
Csp6I	GTAC	2 cut(s)	298, 466
CspAI	ACCGGT	1 cut(s)	553
CviAII	CATG	4 cut(s)	140, 584, 595, 653
CviQI	GTAC	2 cut(s)	298, 466
DdeI	CTNAG	3 cut(s)	119, 233, 488
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	2 cut(s)	38, 599
DpnII	GATC	2 cut(s)	36, 597
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	326, 477
EarI	CTCTTC	2 cut(s)	326, 477
EciI	GGCGGA	3 cut(s)	296, 323, 377
Eco130I	CCWWGG	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	16
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	4 cut(s)	143, 587, 598, 656
FaqI	GGGAC	2 cut(s)	542, 550
FatI	CATG	4 cut(s)	139, 583, 594, 652
Fnu4HI	GCNGC	4 cut(s)	22, 88, 133, 504
FokI	GGATG	3 cut(s)	377, 431, 458
Fsp4HI	GCNGC	4 cut(s)	22, 88, 133, 504
FspBI	CTAG	3 cut(s)	47, 57, 507
GlaI	GCGC	3 cut(s)	91, 136, 166
GluI	GCNGC	4 cut(s)	22, 88, 133, 504
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	21, 146, 550
HapII	CCGG	3 cut(s)	93, 111, 554
HhaI	GCGC	3 cut(s)	92, 137, 167
Hin1I	GRCGYC	2 cut(s)	135, 630
Hin1II	CATG	4 cut(s)	143, 587, 598, 656
Hin6I	GCGC	3 cut(s)	90, 135, 165
HinP1I	GCGC	3 cut(s)	90, 135, 165
HpaII	CCGG	3 cut(s)	93, 111, 554
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	6 cut(s)	40, 214, 559, 595, 626, 653
Hpy99I	CGWCG	1 cut(s)	565
HpyAV	CCTTC	3 cut(s)	307, 379, 449
HpyCH4III	ACNGT	2 cut(s)	208, 230
HpyCH4IV	ACGT	3 cut(s)	300, 563, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
HpyF3I	CTNAG	3 cut(s)	119, 233, 488
HpySE526I	ACGT	3 cut(s)	300, 563, 630
Hsp92I	GRCGYC	2 cut(s)	135, 630
Hsp92II	CATG	4 cut(s)	143, 587, 598, 656
HspAI	GCGC	3 cut(s)	90, 135, 165
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	2 cut(s)	92, 110
KroNI	GCCGGC	2 cut(s)	94, 112
Kzo9I	GATC	2 cut(s)	36, 597
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	7 cut(s)	106, 124, 147, 153, 249, 567, 630
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	47, 57, 507
MaeII	ACGT	3 cut(s)	300, 563, 630
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	38, 599
MboI	GATC	2 cut(s)	36, 597
MboII	GAAGA	7 cut(s)	22, 343, 382, 385, 388, 494, 535
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	30, 268, 619
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	250, 253, 298, 316, 327, 397, 415
Mox20I	TGGCCA	1 cut(s)	146
MroNI	GCCGGC	2 cut(s)	92, 110
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	252, 351, 667
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	3 cut(s)	93, 111, 554
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	93, 124, 143
NaeI	GCCGGC	2 cut(s)	94, 112
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	2 cut(s)	36, 597
NgoMIV	GCCGGC	2 cut(s)	92, 110
NlaIII	CATG	4 cut(s)	143, 587, 598, 656
NlaIV	GGNNCC	3 cut(s)	136, 549, 558
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	212
PagI	TCATGA	2 cut(s)	594, 652
PciSI	GCTCTTC	1 cut(s)	477
PdiI	GCCGGC	2 cut(s)	94, 112
PinAI	ACCGGT	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	23, 89, 134, 505
PluTI	GGCGCC	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	136, 549, 558
PspPI	GGNCC	2 cut(s)	548, 556
RsaI	GTAC	2 cut(s)	299, 467
RsaNI	GTAC	2 cut(s)	298, 466
RseI	CAYNNNNRTG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	252, 351, 667
SatI	GCNGC	4 cut(s)	22, 88, 133, 504
Sau3AI	GATC	2 cut(s)	36, 597
Sau96I	GGNCC	2 cut(s)	548, 556
ScaI	AGTACT	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	213
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	30, 268, 619
SsiI	CCGC	6 cut(s)	22, 88, 132, 281, 308, 362
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	3 cut(s)	47, 57, 507
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	208, 230
TaiI	ACGT	3 cut(s)	303, 566, 633
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	30, 268, 619
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	3 cut(s)	24, 90, 135
Tru1I	TTAA	3 cut(s)	252, 351, 667
Tru9I	TTAA	3 cut(s)	252, 351, 667
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	398, 407, 462, 557, 583
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	212
XspI	CTAG	3 cut(s)	47, 57, 507
ZraI	GACGTC	1 cut(s)	631
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.