Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

8807239 .. 8807916

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATCGACGCCATGCCCAAGAAAACCCAAGGCCGGAAGAAAATCGAGATTAAGCGGATAGAGAATTCGAGCAATAAACAAGTCACCTTCTCAAAGCGCCGCGCCGGCATATTCAAGAAGGCTGGCGAGTTAAGCGTGCTATGTGGCGCGCACATGGCAGTCATCGTGTTCTCTAGTGCCAACAAGGTGTTCTGTTATGGGCACCCAGACATTCATGCAGTGATCGAGAGCTATCAAAATGGGCTCACCTCTGTAGTCGGAGCTGATGATAAGGCCCAAGAGGTTCTCATGGCGGAGTACAACAAAGAGTGCGAGGAGAAGCATAAGGAGGAAGAGGAGTTGAAGAAGAAGATGGCGGAGACGAAAGCCAAGGCAAATGAGAAGAAGATGATGATGGAAATGAGCACGAGCGGGAATCAGGTGCGTGAGGGGTTTTGGTGGGATGAGCCGGTGGATTTGGTCATGCTGGAGGAGCGAGAGAGGGAGCAGTACATGATGGCATTGGAAACCTTGAGGAACAAGGTAGCTGATAAGGCTCATCACAAGAAGATTTTGAGTGGGACTATTGCTGGGACATCAGTTCCGGCTGTTCATCGACTATATCATATGATGACACCCAATAATTGTTTTGGTACTGGTTTCGGTGATCAATATGGGAACCATGGTTTTGGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

225

Amino Acids

25.45

Weight (kDa)

8.54

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 66	9.9e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	411
AccII	CGCG	2 cut(s)	102, 149
AciI	CCGC	5 cut(s)	55, 100, 293, 356, 411
AcsI	RAATTY	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	3 cut(s)	299, 491, 634
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	115, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	3 cut(s)	231, 263, 527
AluI	AGCT	3 cut(s)	231, 263, 527
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	2 cut(s)	31, 273
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	4 cut(s)	99, 104, 149, 151
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	76, 238, 656
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	407
BccI	CCATC	3 cut(s)	346, 388, 490
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	203, 659
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	532
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	28, 369, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	2 cut(s)	104, 448
Bse1I	ACTGG	1 cut(s)	640
BseDI	CCNNGG	3 cut(s)	28, 369, 661
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	640
BsePI	GCGCGC	1 cut(s)	147
BseRI	GAGGAG	3 cut(s)	329, 350, 485
BseSI	GKGCMC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	2 cut(s)	102, 149
BshFI	GGCC	2 cut(s)	33, 275
BshNI	GGYRCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	34, 105, 449, 584
BslFI	GGGAC	2 cut(s)	574, 586
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	574, 586
BsnI	GGCC	2 cut(s)	33, 275
Bsp1286I	GDGCHC	3 cut(s)	204, 246, 407
Bsp143I	GATC	3 cut(s)	3, 222, 646
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	5 cut(s)	55, 100, 293, 356, 411
BspANI	GGCC	2 cut(s)	33, 275
BspFNI	CGCG	2 cut(s)	102, 149
BspLI	GGNNCC	2 cut(s)	203, 659
BspT107I	GGYRCC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	411
BsrFI	RCCGGY	2 cut(s)	104, 448
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	2 cut(s)	104, 448
BssECI	CCNNGG	3 cut(s)	28, 369, 661
BssHII	GCGCGC	1 cut(s)	147
BssMI	GATC	3 cut(s)	3, 222, 646
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	406
BssT1I	CCWWGG	3 cut(s)	28, 369, 661
Bst2BI	CACGAG	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	4 cut(s)	106, 124, 137, 149
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	2 cut(s)	102, 149
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	4 cut(s)	99, 104, 149, 151
BstKTI	GATC	3 cut(s)	6, 225, 649
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	3, 222, 646
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 132, 155, 472, 533
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	2 cut(s)	102, 149
BstXI	CCANNNNNNTGG	1 cut(s)	668
BsuRI	GGCC	2 cut(s)	33, 275
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	4 cut(s)	106, 124, 137, 149
CfoI	GCGC	4 cut(s)	99, 104, 149, 151
Cfr10I	RCCGGY	2 cut(s)	104, 448
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	298, 490, 633
CviAII	CATG	7 cut(s)	13, 154, 215, 289, 463, 493, 662
CviQI	GTAC	3 cut(s)	298, 490, 633
DpnI	GATC	3 cut(s)	5, 224, 648
DpnII	GATC	3 cut(s)	3, 222, 646
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	2 cut(s)	308, 371
Eco130I	CCWWGG	3 cut(s)	28, 369, 661
Eco24I	GRGCYC	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	64
EcoT14I	CCWWGG	3 cut(s)	28, 369, 661
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	3 cut(s)	28, 369, 661
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	7 cut(s)	16, 157, 218, 292, 466, 496, 665
FaqI	GGGAC	2 cut(s)	574, 586
FatI	CATG	7 cut(s)	12, 153, 214, 288, 462, 492, 661
FauI	CCCGC	1 cut(s)	404
FauNDI	CATATG	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	4 cut(s)	98, 103, 148, 150
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	33, 275
HapII	CCGG	4 cut(s)	34, 105, 449, 584
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	4 cut(s)	99, 104, 149, 151
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	7 cut(s)	16, 157, 218, 292, 466, 496, 665
Hin6I	GCGC	4 cut(s)	97, 102, 147, 149
HinP1I	GCGC	4 cut(s)	97, 102, 147, 149
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	4 cut(s)	34, 105, 449, 584
HphI	GGTGA	3 cut(s)	76, 238, 656
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	46, 115, 226
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	97, 112
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 132, 155, 472, 533
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	7 cut(s)	16, 157, 218, 292, 466, 496, 665
HspAI	GCGC	4 cut(s)	97, 102, 147, 149
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	3, 222, 646
LmnI	GCTCC	3 cut(s)	260, 472, 484
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	5, 224, 648
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	3 cut(s)	3, 222, 646
MboII	GAAGA	8 cut(s)	49, 344, 355, 358, 361, 394, 397, 559
MhlI	GDGCHC	3 cut(s)	204, 246, 407
MluCI	AATT	2 cut(s)	64, 622
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	9 cut(s)	259, 274, 307, 322, 328, 421, 463, 474, 507
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	2 cut(s)	51, 131
MspI	CCGG	4 cut(s)	34, 105, 449, 584
MteI	GCGCNGCGC	1 cut(s)	100
MvnI	CGCG	2 cut(s)	102, 149
MwoI	GCNNNNNNNGC	5 cut(s)	105, 132, 155, 472, 533
NaeI	GCCGGC	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	661
NdeI	CATATG	1 cut(s)	606
NdeII	GATC	3 cut(s)	3, 222, 646
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	7 cut(s)	16, 157, 218, 292, 466, 496, 665
NlaIV	GGNNCC	2 cut(s)	203, 659
NmuCI	GTSAC	1 cut(s)	82
PauI	GCGCGC	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	203, 659
PspPI	GGNCC	1 cut(s)	274
PteI	GCGCGC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	299, 491, 634
RsaNI	GTAC	3 cut(s)	298, 490, 633
SaqAI	TTAA	2 cut(s)	51, 131
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	3 cut(s)	3, 222, 646
Sau96I	GGNCC	1 cut(s)	274
SduI	GDGCHC	3 cut(s)	204, 246, 407
SfcI	CTRYAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	2 cut(s)	64, 622
SsiI	CCGC	5 cut(s)	55, 100, 293, 356, 411
SspMI	CTAG	1 cut(s)	174
StyI	CCWWGG	3 cut(s)	28, 369, 661
TaqI	TCGA	5 cut(s)	6, 45, 68, 225, 595
TasI	AATT	2 cut(s)	64, 622
TatI	WGTACW	2 cut(s)	297, 489
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	51, 131
Tru9I	TTAA	2 cut(s)	51, 131
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	203, 581
TspRI	CASTG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	64
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.