Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Forward (+)

60356094 .. 60356759

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCCAAGAAAACCCAAGGCCGGAAGAAAATCGAGATTAAGCGGATAGAGAATTCGAGCAATAAACAAGTCACCTTCTCAAAGCGCCGCGCCGGCATATTCAAGAAGGCTGGCGAGTTAAGCGTGCTATGTGGCGCGCACATGGCAGTCATCGTGTTCTCTAGTGCCAACAAGGTGTTCTGTTATGGGCACCCAGACATCCATGCAGTGATCGAGAGTTATCAAAATGGGCTCAACTCTGTAGTCGGAGCTGACGATAAGGCCCAAGAGGTTCTCATGGCGGAGTACAACAAAGAGTGCGAGAAGAAGCGTAAGGAGGAAGAGGAGTTGAAGAAGAAGATGGCGGAGACGAAAGCCAAGGCAAATGAGAAGAAGATGATGATGGAAATGAGCACGAGCGGGAATCAGGTGCGTGAGGGGTTTTGGTGGGATGAGCCGGTGGATTTGGTCATGCTGGAGGAGCGCGAGAGGGAGCAGTACATGATGGCATTGGAAACCTTGAGGAACAAGGTAGCTGATAAGGCTCATCACAAGAAGATTTTGAGTGGGACTATTGCTGAGACATCAGTTCCGGCTGTTCATCGACTATATCATATGATGACACCCAATAACTGTTTTGGTACTGGTTTCGGTGATCAATATGGGAACCATGGTTTTGGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

221

Amino Acids

25.11

Weight (kDa)

9.01

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	9.6e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	399
AccII	CGCG	3 cut(s)	90, 137, 465
AciI	CCGC	5 cut(s)	43, 88, 281, 344, 399
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	3 cut(s)	287, 479, 622
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	103, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	2 cut(s)	251, 515
AluI	AGCT	2 cut(s)	251, 515
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	341, 554
AoxI	GGCC	2 cut(s)	19, 261
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	5 cut(s)	87, 92, 137, 139, 465
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	64, 644
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	395
BccI	CCATC	3 cut(s)	334, 376, 478
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	341, 554
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	191, 647
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	16, 357, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	2 cut(s)	92, 436
Bse1I	ACTGG	1 cut(s)	628
BseDI	CCNNGG	3 cut(s)	16, 357, 649
BseGI	GGATG	2 cut(s)	198, 436
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	628
BsePI	GCGCGC	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	338, 473
BseSI	GKGCMC	1 cut(s)	192
Bsh1236I	CGCG	3 cut(s)	90, 137, 465
BshFI	GGCC	2 cut(s)	21, 263
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	4 cut(s)	22, 93, 437, 572
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	341, 554
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	21, 263
Bsp1286I	GDGCHC	3 cut(s)	192, 234, 395
Bsp143I	GATC	2 cut(s)	210, 634
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	5 cut(s)	43, 88, 281, 344, 399
BspANI	GGCC	2 cut(s)	21, 263
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	3 cut(s)	90, 137, 465
BspLI	GGNNCC	2 cut(s)	191, 647
BspT107I	GGYRCC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	399
BsrFI	RCCGGY	2 cut(s)	92, 436
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	2 cut(s)	92, 436
BssECI	CCNNGG	3 cut(s)	16, 357, 649
BssHII	GCGCGC	1 cut(s)	135
BssMI	GATC	2 cut(s)	210, 634
BssSI	CACGAG	1 cut(s)	394
BssT1I	CCWWGG	3 cut(s)	16, 357, 649
Bst2BI	CACGAG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	1 cut(s)	315
BstC8I	GCNNGC	4 cut(s)	94, 112, 125, 137
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	198, 436
BstFNI	CGCG	3 cut(s)	90, 137, 465
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	5 cut(s)	87, 92, 137, 139, 465
BstKTI	GATC	2 cut(s)	213, 637
BstMAI	GTCTC	2 cut(s)	341, 554
BstMBI	GATC	2 cut(s)	210, 634
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 120, 143, 460, 521
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	3 cut(s)	90, 137, 465
BstXI	CCANNNNNNTGG	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	21, 263
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	198, 436
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	94, 112, 125, 137
CfoI	GCGC	5 cut(s)	87, 92, 137, 139, 465
Cfr10I	RCCGGY	2 cut(s)	92, 436
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	286, 478, 621
CviAII	CATG	6 cut(s)	142, 203, 277, 451, 481, 650
CviQI	GTAC	3 cut(s)	286, 478, 621
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	2 cut(s)	212, 636
DpnII	GATC	2 cut(s)	210, 634
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	2 cut(s)	296, 359
Eco130I	CCWWGG	3 cut(s)	16, 357, 649
Eco24I	GRGCYC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	52
EcoT14I	CCWWGG	3 cut(s)	16, 357, 649
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	3 cut(s)	16, 357, 649
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	6 cut(s)	141, 202, 276, 450, 480, 649
FauI	CCCGC	1 cut(s)	392
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	185, 443
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	5 cut(s)	86, 91, 136, 138, 464
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	21, 263
HapII	CCGG	4 cut(s)	22, 93, 437, 572
HhaI	GCGC	5 cut(s)	87, 92, 137, 139, 465
Hin1II	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
Hin6I	GCGC	5 cut(s)	85, 90, 135, 137, 463
HinP1I	GCGC	5 cut(s)	85, 90, 135, 137, 463
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	4 cut(s)	22, 93, 437, 572
HphI	GGTGA	2 cut(s)	64, 644
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	3 cut(s)	34, 103, 214
HpyAV	CCTTC	2 cut(s)	85, 100
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 120, 143, 460, 521
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
HspAI	GCGC	5 cut(s)	85, 90, 135, 137, 463
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	210, 634
LmnI	GCTCC	3 cut(s)	248, 460, 472
LpnPI	CCDG	9 cut(s)	35, 96, 106, 207, 392, 440, 450, 585, 609
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	212, 636
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	2 cut(s)	210, 634
MboII	GAAGA	9 cut(s)	37, 316, 332, 343, 346, 349, 382, 385, 547
MhlI	GDGCHC	3 cut(s)	192, 234, 395
MluCI	AATT	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	262, 310, 316, 409, 451, 462, 495
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	2 cut(s)	39, 119
MspI	CCGG	4 cut(s)	22, 93, 437, 572
MteI	GCGCNGCGC	1 cut(s)	88
MvnI	CGCG	3 cut(s)	90, 137, 465
MwoI	GCNNNNNNNGC	5 cut(s)	93, 120, 143, 460, 521
NaeI	GCCGGC	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	649
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	2 cut(s)	210, 634
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	6 cut(s)	145, 206, 280, 454, 484, 653
NlaIV	GGNNCC	2 cut(s)	191, 647
NmuCI	GTSAC	1 cut(s)	70
PauI	GCGCGC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	191, 647
PspPI	GGNCC	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	135
RsaI	GTAC	3 cut(s)	287, 479, 622
RsaNI	GTAC	3 cut(s)	286, 478, 621
SaqAI	TTAA	2 cut(s)	39, 119
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	210, 634
Sau96I	GGNCC	1 cut(s)	262
SduI	GDGCHC	3 cut(s)	192, 234, 395
SetI	ASST	8 cut(s)	77, 177, 253, 273, 411, 500, 513, 517
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	5 cut(s)	43, 88, 281, 344, 399
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	3 cut(s)	16, 357, 649
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	4 cut(s)	33, 56, 213, 583
TasI	AATT	1 cut(s)	52
TatI	WGTACW	2 cut(s)	285, 477
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	39, 119
Tru9I	TTAA	2 cut(s)	39, 119
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.