Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

33920407 .. 33920880

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1322300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTAGACTGGTATTGCACTGTGGCAAGTCCTCCTCCAGTGTCTGATGATAGCACTAGAGATCAAAATCCTAATGGGGTGCCCGTGGCAGAGTTCAACAAGCAGTACATGGAGGTGATTAGGGAGTTGGAGGAACAGAAGCGGAGAGTTGTGGAGGCTGAAGAGGCGGTGAATATGAAAATGGATGTGATGGATGCAGCGGGTAGGTATGGTGACAGGTTTTGGTGGGAGGATGAGCGTGTTGACTTGGAAGGGTTGGATATGCAGGAAGTTGAGCATTACTTGATTGCATTAGAGGATGTAAGGAAGCAGGTGGCTGCTAGGCTTCATCAAAAGACGATTTTGAATGGGACGTTGAACCTGGGGGCTATGCTGCTGGTTCCAGATCGACTTTGTCATCTGCCGGTGATGACCAACGGTTTTGGTGATCAGGATGGTCAATCCGGTGGTGGCTATCACAGTTTTGGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

4.59

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	79
AciI	CCGC	3 cut(s)	142, 167, 200
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	97, 346, 358
AjnI	CCWGG	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	197, 317, 373
AsuHPI	GGTGA	5 cut(s)	127, 181, 224, 418, 437
BaeGI	GKGCMC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	209, 304, 360
BccI	CCATC	2 cut(s)	184, 428
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	3 cut(s)	5, 57, 321
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	198, 318, 374
BlsI	GCNGC	3 cut(s)	199, 319, 375
Bme1390I	CCNGG	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	81, 381
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	84, 361
BsaWI	WCCGGW	1 cut(s)	443
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	14, 38
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	84, 361
BseGI	GGATG	5 cut(s)	190, 199, 238, 304, 439
BseJI	GATNNNNATC	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	14, 38
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	209, 304, 360
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	404, 444
BslFI	GGGAC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	61, 385, 427
BspACI	CCGC	3 cut(s)	142, 167, 200
BspLI	GGNNCC	2 cut(s)	81, 381
BspMI	ACCTGC	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	14, 38
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	84, 361
BssMI	GATC	3 cut(s)	61, 385, 427
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	22, 419, 461
Bst6I	CTCTTC	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	5 cut(s)	190, 199, 238, 304, 439
BstKTI	GATC	3 cut(s)	64, 388, 430
BstMBI	GATC	3 cut(s)	61, 385, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	209, 304, 360
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	5 cut(s)	190, 199, 238, 304, 439
BtsIMutI	CAGTG	2 cut(s)	18, 45
BveI	ACCTGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	158, 317, 325, 368, 453
CviKI_1	RGCY	5 cut(s)	158, 317, 325, 368, 453
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	3 cut(s)	63, 387, 429
DpnII	GATC	3 cut(s)	61, 385, 427
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	112
FaiI	YATR	6 cut(s)	110, 176, 210, 263, 371, 472
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	108
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	198, 318, 374
FokI	GGATG	5 cut(s)	197, 206, 245, 311, 446
Fsp4HI	GCNGC	3 cut(s)	198, 318, 374
FspBI	CTAG	3 cut(s)	5, 57, 321
GluI	GCNGC	3 cut(s)	198, 318, 374
GsuI	CTGGAG	1 cut(s)	21
HapII	CCGG	2 cut(s)	404, 444
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	404, 444
HphI	GGTGA	5 cut(s)	127, 181, 224, 418, 437
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	383, 431
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	22, 419, 461
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	18, 197, 265, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	61, 385, 427
Lsp1109I	GCAGC	3 cut(s)	209, 304, 360
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	3 cut(s)	5, 57, 321
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	3 cut(s)	63, 387, 429
MboI	GATC	3 cut(s)	61, 385, 427
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	108, 237
MnlI	CCTC	8 cut(s)	42, 45, 106, 124, 148, 157, 223, 289
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	404, 444
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	61, 385, 427
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	81, 381
NmuCI	GTSAC	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	301
PflFI	GACNNNGTC	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	199, 319, 375
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	81, 381
PstNI	CAGNNNCTG	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	393
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	113
SatI	GCNGC	3 cut(s)	198, 318, 374
Sau3AI	GATC	3 cut(s)	61, 385, 427
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	6 cut(s)	117, 209, 221, 315, 356, 363
SfaNI	GCATC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	113
SsiI	CCGC	3 cut(s)	142, 167, 200
SspMI	CTAG	3 cut(s)	5, 57, 321
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	22, 419, 461
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	388
TatI	WGTACW	1 cut(s)	105
TscAI	CASTG	2 cut(s)	25, 45
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	197, 317, 373
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	191, 317
TspRI	CASTG	2 cut(s)	25, 45
Tth111I	GACNNNGTC	1 cut(s)	393
XspI	CTAG	3 cut(s)	5, 57, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.