Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Forward (+)

26413409 .. 26414050

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTACCAGTCACCACAAAGAAGTATTAACACACTTCTTCTCAAAAGAAGAAGAAGAAGAAGGGCCGGCATATTCAAAAAAGCCGGCGAGCTTAGTGTGCTTTGCGGCGCCCATGTGGCCATTATAGTGTTCTCTGGCGCAGGGAAGGTGTTTTGCTATGGACACCCGAACATCAACACGGTGCTCGAGAGCTATCAAAACGGTCTTAGTTCAGTTGTCAGAGTTAATGAGGAGGCTGGCGATTTGCTGGTGGCGGAGTTCAACAAAGAGTACGTGGAGGCAGAGAAGGAGTTTGAGGATTTGAAGAGGAAAGCCACGGGGATTAAACAGATGGCGGATGAGAAGAAGAAGATGATGAAGGAAATGAATATGAGTGAGGGGTTTTGGTGGGATGAGGCTGTGGATTTGGCAATGATGGATGAACGGGAATGGGAGCAGTACTTCAAGGCGTTGGAAGAGTTAAGGCGAAAGGTGGCTGCTAGGGTTGATGAGTTGAAGATTTTGAATGGGACTATGATGGGGCCGCCGGTCCCGGCGGTTCATCATCGGCTTTGTCATGTGCCGTTCATGACCTCCAATAATTGTTTTGGTAATTGTCAGGACGTCCAATTTGGTTCTGGTTATCATGATTTAGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

213

Amino Acids

24.33

Weight (kDa)

7.66

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 53	7.9e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	5 cut(s)	105, 254, 335, 524, 536
AcoI	YGGCCR	1 cut(s)	117
AcyI	GRCGYC	2 cut(s)	108, 603
AfaI	GTAC	3 cut(s)	5, 272, 440
AgsI	TTSAA	6 cut(s)	76, 262, 304, 445, 496, 505
AluBI	AGCT	2 cut(s)	91, 192
AluI	AGCT	2 cut(s)	91, 192
Alw21I	GWGCWC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	63, 117, 521
ApeKI	GCWGC	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspLEI	GCGC	2 cut(s)	110, 140
AspS9I	GGNCC	3 cut(s)	63, 521, 529
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	529
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	325, 409, 511
BceAI	ACGGC	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	106, 477, 524
BlsI	GCNGC	3 cut(s)	107, 478, 525
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	3 cut(s)	63, 521, 529
BmiI	GGNNCC	3 cut(s)	109, 522, 531
BmrFI	CCNGG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	2 cut(s)	108, 603
BsaJI	CCNNGG	1 cut(s)	315
Bse118I	RCCGGY	3 cut(s)	65, 83, 526
Bse1I	ACTGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	343, 397, 424
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	3 cut(s)	65, 119, 523
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	4 cut(s)	66, 84, 527, 533
BslFI	GGGAC	2 cut(s)	515, 523
BsmFI	GGGAC	2 cut(s)	515, 523
BsnI	GGCC	3 cut(s)	65, 119, 523
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	186
BspACI	CCGC	5 cut(s)	105, 254, 335, 524, 536
BspANI	GGCC	3 cut(s)	65, 119, 523
BspHI	TCATGA	2 cut(s)	567, 625
BspLI	GGNNCC	3 cut(s)	109, 522, 531
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	3 cut(s)	65, 83, 526
BsrI	ACTGG	1 cut(s)	7
BssAI	RCCGGY	3 cut(s)	65, 83, 526
BssECI	CCNNGG	1 cut(s)	315
BssNI	GRCGYC	2 cut(s)	108, 603
Bst4CI	ACNGT	2 cut(s)	181, 203
Bst6I	CTCTTC	2 cut(s)	299, 450
BstACI	GRCGYC	2 cut(s)	108, 603
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	4 cut(s)	67, 85, 89, 238
BstDEI	CTNAG	2 cut(s)	92, 206
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	343, 397, 424
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 140
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 116
BstSCI	CCNGG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	65, 119, 523
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	343, 397, 424
Cac8I	GCNNGC	4 cut(s)	67, 85, 89, 238
CciI	TCATGA	2 cut(s)	567, 625
CfoI	GCGC	2 cut(s)	110, 140
Cfr10I	RCCGGY	3 cut(s)	65, 83, 526
Cfr13I	GGNCC	3 cut(s)	63, 521, 529
Csp6I	GTAC	3 cut(s)	4, 271, 439
CviAII	CATG	4 cut(s)	113, 557, 568, 626
CviQI	GTAC	3 cut(s)	4, 271, 439
DdeI	CTNAG	2 cut(s)	92, 206
DinI	GGCGCC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	299, 450
EarI	CTCTTC	2 cut(s)	299, 450
EciI	GGCGGA	2 cut(s)	269, 350
Eco47I	GGWCC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	4 cut(s)	116, 560, 571, 629
FaiI	YATR	9 cut(s)	71, 114, 125, 159, 371, 515, 558, 569, 627
FaqI	GGGAC	2 cut(s)	515, 523
FatI	CATG	4 cut(s)	112, 556, 567, 625
Fnu4HI	GCNGC	3 cut(s)	106, 477, 524
FokI	GGATG	3 cut(s)	350, 404, 431
Fsp4HI	GCNGC	3 cut(s)	106, 477, 524
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	2 cut(s)	109, 139
GluI	GCNGC	3 cut(s)	106, 477, 524
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	65, 119, 523
HapII	CCGG	4 cut(s)	66, 84, 527, 533
HhaI	GCGC	2 cut(s)	110, 140
Hin1I	GRCGYC	2 cut(s)	108, 603
Hin1II	CATG	4 cut(s)	116, 560, 571, 629
Hin6I	GCGC	2 cut(s)	108, 138
HinP1I	GCGC	2 cut(s)	108, 138
HpaII	CCGG	4 cut(s)	66, 84, 527, 533
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	4 cut(s)	187, 568, 599, 626
HpyAV	CCTTC	4 cut(s)	54, 139, 280, 352
HpyCH4III	ACNGT	2 cut(s)	181, 203
HpyCH4IV	ACGT	2 cut(s)	273, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 116
HpyF3I	CTNAG	2 cut(s)	92, 206
HpySE526I	ACGT	2 cut(s)	273, 603
Hsp92I	GRCGYC	2 cut(s)	108, 603
Hsp92II	CATG	4 cut(s)	116, 560, 571, 629
HspAI	GCGC	2 cut(s)	108, 138
KasI	GGCGCC	1 cut(s)	107
KroI	GCCGGC	2 cut(s)	65, 83
KroNI	GCCGGC	2 cut(s)	67, 85
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	273, 603
MaeIII	GTNAC	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	3 cut(s)	580, 592, 608
MluNI	TGGCCA	1 cut(s)	119
Mly113I	GGCGCC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	8 cut(s)	223, 226, 271, 289, 300, 370, 388, 583
Mox20I	TGGCCA	1 cut(s)	119
MroNI	GCCGGC	2 cut(s)	65, 83
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	5 cut(s)	27, 225, 324, 461, 640
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	4 cut(s)	66, 84, 527, 533
MspR9I	CCNGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	2 cut(s)	97, 116
NaeI	GCCGGC	2 cut(s)	67, 85
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	533
NgoMIV	GCCGGC	2 cut(s)	65, 83
NlaIII	CATG	4 cut(s)	116, 560, 571, 629
NlaIV	GGNNCC	3 cut(s)	109, 522, 531
NmuCI	GTSAC	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	185
PagI	TCATGA	2 cut(s)	567, 625
PdiI	GCCGGC	2 cut(s)	67, 85
PkrI	GCNGC	3 cut(s)	107, 478, 525
PluTI	GGCGCC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	109, 522, 531
PspPI	GGNCC	3 cut(s)	63, 521, 529
RsaI	GTAC	3 cut(s)	5, 272, 440
RsaNI	GTAC	3 cut(s)	4, 271, 439
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	5 cut(s)	27, 225, 324, 461, 640
SatI	GCNGC	3 cut(s)	106, 477, 524
Sau96I	GGNCC	3 cut(s)	63, 521, 529
ScaI	AGTACT	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	7 cut(s)	93, 150, 194, 276, 474, 575, 606
SfoI	GGCGCC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	529
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	580, 592, 608
SsiI	CCGC	5 cut(s)	105, 254, 335, 524, 536
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	181, 203
TaiI	ACGT	2 cut(s)	276, 606
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	580, 592, 608
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	108, 526
Tru1I	TTAA	5 cut(s)	27, 225, 324, 461, 640
Tru9I	TTAA	5 cut(s)	27, 225, 324, 461, 640
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	5 cut(s)	371, 380, 435, 530, 556
VpaK11BI	GGWCC	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XhoI	CTCGAG	1 cut(s)	185
XspI	CTAG	1 cut(s)	480
ZraI	GACGTC	1 cut(s)	604
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.