Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Reverse (-)

8664480 .. 8668412

Gene Structure 3933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCCAAGAAAACCCAAGGCCGGAAGAAAATCGAGATCAAGCGGATAGAGAATTCGAGCAATAAACAAGTCACCTTCTCAAAGCGCCGCGCTGGCATATTCAAGAAGGCTGGCGAGTTAAGCGTGCTATGTGGCGCGCACATGGCAGTCATCGTGTTCTCTAGTGCCAACAAGGTGTTCTGTTATGGGCACCCAGACATCCATGCAGTGATCGAGAGCTATCAAAATGGGCTCAACTCTGTTGTCGGAGCTGATGATAAGGCCCAGGAGGTTCTCATGGCAGAGTACAACAAACAGTGCGAGGAGAAGCATAAGGAGGAAGAGGAGTTGAAGAAGAAGATGGCGGAGACGAAAGCCAAGGCAAATGAGAAGAAGATGATGATGGAAATAAGCACAAGCAGGAATCAGATGCGTGAGGGGTTTTGGTGGGATGAGCCGGTGGATTTGGTCACGCTGGAAGAGCGAGAGAGGGAGCAGTACATGATGGCATTGGAAACCTTGAGGAACAAGGTAGCTGATAAGGCTCATCACAAGAAGATTTTGAGTGGGACTATTGCCGGGACATCAGTTCCGGCTGTTCATCGACTTTATCATATGATGACACCCAATAATTGTTTTGGTACTGGTTTCGGTGATCAATATGGGAACCATGGTGATTTTTCGGCTCTGGATCGAAGGATATCTCTGGGGCGTGGTGGTGCAGTCTGGTGGGTCTCATGGGCAGATCGACGGGGTTGCAGATTGAGGGCGCTGGGTTGGGGCAGTTTCGATTTCGGGGCGGCGTGGATCGTGGAGCGTTGTGTTGTGGAGTCGAGGCGGTTTCGACTTGGGTGGCGGAATCATGGAGCGCTGGGTCGTGGTAGGGTCCGTGGTGGTGTCGCGTCGTGCCGGTGGGCTGAGGCCGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGGTCAGTTTGAGTGCATTTGCGTTCTTGTTTTCGGAGCTTGTGCAATACAGCCAAACACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

338

Amino Acids

37.94

Weight (kDa)

8.72

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	1.9e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	3 cut(s)	90, 137, 881
AciI	CCGC	7 cut(s)	43, 88, 344, 779, 817, 835, 903
AclWI	GGATC	2 cut(s)	678, 794
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	3 cut(s)	287, 479, 622
AfeI	AGCGCT	1 cut(s)	849
AfiI	CCNNNNNNNGG	2 cut(s)	21, 1007
AgsI	TTSAA	2 cut(s)	103, 331
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	219, 251, 515, 910, 986
AluI	AGCT	5 cut(s)	219, 251, 515, 910, 986
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	2 cut(s)	341, 718
AlwI	GGATC	2 cut(s)	678, 794
Aor51HI	AGCGCT	1 cut(s)	849
AoxI	GGCC	3 cut(s)	19, 261, 900
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AspLEI	GCGC	6 cut(s)	87, 92, 137, 139, 751, 850
AspS9I	GGNCC	2 cut(s)	262, 865
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	64, 644, 665
AvaII	GGWCC	1 cut(s)	865
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	2 cut(s)	234, 912
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	912
BbvCI	CCTCAGC	1 cut(s)	897
BccI	CCATC	3 cut(s)	334, 376, 478
BcgI	CGANNNNNNTGC	2 cut(s)	717, 751
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	341, 718
BfaI	CTAG	1 cut(s)	162
BfoI	RGCGCY	3 cut(s)	88, 752, 851
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	88, 780, 903
BlsI	GCNGC	3 cut(s)	89, 781, 904
Bme1390I	CCNGG	2 cut(s)	266, 559
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	2 cut(s)	262, 865
BmiI	GGNNCC	3 cut(s)	191, 647, 866
BmrFI	CCNGG	2 cut(s)	266, 559
BmsI	GCATC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	5 cut(s)	16, 264, 357, 649, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 1007
Bse118I	RCCGGY	2 cut(s)	436, 888
Bse1I	ACTGG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	5 cut(s)	16, 264, 357, 649, 868
BseGI	GGATG	2 cut(s)	198, 436
BseLI	CCNNNNNNNGG	2 cut(s)	21, 1007
BseMII	CTCAG	1 cut(s)	888
BseNI	ACTGG	1 cut(s)	628
BsePI	GCGCGC	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	317, 338
BseSI	GKGCMC	1 cut(s)	192
BseYI	CCCAGC	2 cut(s)	751, 850
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	3 cut(s)	90, 137, 881
BshFI	GGCC	3 cut(s)	21, 263, 902
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	912
BsiSI	CCGG	5 cut(s)	22, 437, 558, 572, 889
BslFI	GGGAC	2 cut(s)	562, 574
BslI	CCNNNNNNNGG	2 cut(s)	21, 1007
BsmAI	GTCTC	2 cut(s)	341, 718
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	562, 574
BsnI	GGCC	3 cut(s)	21, 263, 902
Bso31I	GGTCTC	1 cut(s)	718
Bsp1286I	GDGCHC	3 cut(s)	192, 234, 912
Bsp143I	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	7 cut(s)	43, 88, 344, 779, 817, 835, 903
BspANI	GGCC	3 cut(s)	21, 263, 902
BspCNI	CTCAG	1 cut(s)	889
BspFNI	CGCG	3 cut(s)	90, 137, 881
BspLI	GGNNCC	3 cut(s)	191, 647, 866
BspPI	GGATC	2 cut(s)	678, 794
BspQI	GCTCTTC	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	718
BsrFI	RCCGGY	2 cut(s)	436, 888
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	2 cut(s)	436, 888
BssECI	CCNNGG	5 cut(s)	16, 264, 357, 649, 868
BssHII	GCGCGC	1 cut(s)	135
BssMI	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
BssT1I	CCWWGG	3 cut(s)	16, 357, 649
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	297, 929, 950
Bst6I	CTCTTC	2 cut(s)	315, 453
BstC8I	GCNNGC	4 cut(s)	94, 112, 125, 137
BstDEI	CTNAG	1 cut(s)	897
BstDSI	CCRYGG	2 cut(s)	649, 868
BstF5I	GGATG	2 cut(s)	198, 436
BstFNI	CGCG	3 cut(s)	90, 137, 881
BstH2I	RGCGCY	3 cut(s)	88, 752, 851
BstHHI	GCGC	6 cut(s)	87, 92, 137, 139, 751, 850
BstKTI	GATC	7 cut(s)	39, 213, 637, 673, 727, 789, 937
BstMAI	GTCTC	2 cut(s)	341, 718
BstMBI	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 120, 143, 460, 521, 902
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	264, 557
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	3 cut(s)	90, 137, 881
BstV2I	GAAGAC	1 cut(s)	951
BsuRI	GGCC	3 cut(s)	21, 263, 902
BtgI	CCRYGG	2 cut(s)	649, 868
BtsCI	GGATG	2 cut(s)	198, 436
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 302
Cac8I	GCNNGC	4 cut(s)	94, 112, 125, 137
CfoI	GCGC	6 cut(s)	87, 92, 137, 139, 751, 850
Cfr10I	RCCGGY	2 cut(s)	436, 888
Cfr13I	GGNCC	2 cut(s)	262, 865
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	3 cut(s)	286, 478, 621
CviAII	CATG	7 cut(s)	142, 203, 277, 481, 650, 717, 842
CviQI	GTAC	3 cut(s)	286, 478, 621
DdeI	CTNAG	1 cut(s)	897
DpnI	GATC	7 cut(s)	38, 212, 636, 672, 726, 788, 936
DpnII	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
Eam1104I	CTCTTC	2 cut(s)	315, 453
EarI	CTCTTC	2 cut(s)	315, 453
EciI	GGCGGA	2 cut(s)	359, 850
Ecl136II	GAGCTC	1 cut(s)	910
Eco130I	CCWWGG	3 cut(s)	16, 357, 649
Eco24I	GRGCYC	2 cut(s)	234, 912
Eco31I	GGTCTC	1 cut(s)	718
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	865
Eco47III	AGCGCT	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	910
EcoICRI	GAGCTC	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	3 cut(s)	16, 357, 649
EcoT38I	GRGCYC	2 cut(s)	234, 912
ErhI	CCWWGG	3 cut(s)	16, 357, 649
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	7 cut(s)	145, 206, 280, 484, 653, 720, 845
FaqI	GGGAC	2 cut(s)	562, 574
FatI	CATG	7 cut(s)	141, 202, 276, 480, 649, 716, 841
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	88, 780, 903
FokI	GGATG	2 cut(s)	185, 443
FriOI	GRGCYC	2 cut(s)	234, 912
Fsp4HI	GCNGC	3 cut(s)	88, 780, 903
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	6 cut(s)	86, 91, 136, 138, 750, 849
GluI	GCNGC	3 cut(s)	88, 780, 903
GsaI	CCCAGC	2 cut(s)	755, 854
HaeII	RGCGCY	3 cut(s)	88, 752, 851
HaeIII	GGCC	3 cut(s)	21, 263, 902
HapII	CCGG	5 cut(s)	22, 437, 558, 572, 889
HgaI	GACGC	1 cut(s)	870
HhaI	GCGC	6 cut(s)	87, 92, 137, 139, 751, 850
Hin1II	CATG	7 cut(s)	145, 206, 280, 484, 653, 720, 845
Hin6I	GCGC	6 cut(s)	85, 90, 135, 137, 749, 848
HinP1I	GCGC	6 cut(s)	85, 90, 135, 137, 749, 848
HinfI	GANTC	3 cut(s)	403, 809, 838
HpaII	CCGG	5 cut(s)	22, 437, 558, 572, 889
HphI	GGTGA	3 cut(s)	64, 644, 665
Hpy188I	TCNGA	3 cut(s)	248, 408, 983
Hpy188III	TCNNGA	5 cut(s)	34, 103, 214, 668, 938
Hpy99I	CGWCG	4 cut(s)	732, 886, 926, 929
HpyAV	CCTTC	3 cut(s)	85, 100, 669
HpyCH4III	ACNGT	3 cut(s)	297, 929, 950
HpyCH4V	TGCA	5 cut(s)	206, 701, 738, 963, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 120, 143, 460, 521, 902
HpyF3I	CTNAG	1 cut(s)	897
Hsp92II	CATG	7 cut(s)	145, 206, 280, 484, 653, 720, 845
HspAI	GCGC	6 cut(s)	85, 90, 135, 137, 749, 848
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	5 cut(s)	248, 472, 793, 845, 983
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	70, 448
MalI	GATC	7 cut(s)	38, 212, 636, 672, 726, 788, 936
MboI	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
MhlI	GDGCHC	3 cut(s)	192, 234, 912
MluCI	AATT	2 cut(s)	52, 610
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	1 cut(s)	226
MseI	TTAA	1 cut(s)	119
MspI	CCGG	5 cut(s)	22, 437, 558, 572, 889
MspR9I	CCNGG	2 cut(s)	266, 559
MteI	GCGCNGCGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	3 cut(s)	90, 137, 881
MwoI	GCNNNNNNNGC	6 cut(s)	93, 120, 143, 460, 521, 902
NciI	CCSGG	1 cut(s)	559
NcoI	CCATGG	1 cut(s)	649
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
NlaIII	CATG	7 cut(s)	145, 206, 280, 484, 653, 720, 845
NlaIV	GGNNCC	3 cut(s)	191, 647, 866
NmeAIII	GCCGAG	1 cut(s)	931
NmuCI	GTSAC	2 cut(s)	70, 448
PauI	GCGCGC	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	2 cut(s)	918, 930
PfeI	GAWTC	2 cut(s)	403, 838
PkrI	GCNGC	3 cut(s)	89, 781, 904
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	2 cut(s)	751, 850
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	191, 647, 866
PspPI	GGNCC	2 cut(s)	262, 865
PteI	GCGCGC	1 cut(s)	135
RsaI	GTAC	3 cut(s)	287, 479, 622
RsaNI	GTAC	3 cut(s)	286, 478, 621
SacI	GAGCTC	1 cut(s)	912
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	3 cut(s)	88, 780, 903
Sau3AI	GATC	7 cut(s)	36, 210, 634, 670, 724, 786, 934
Sau96I	GGNCC	2 cut(s)	262, 865
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	2 cut(s)	266, 559
SduI	GDGCHC	3 cut(s)	192, 234, 912
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	865
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	2 cut(s)	52, 610
SsiI	CCGC	7 cut(s)	43, 88, 344, 779, 817, 835, 903
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	912
StyD4I	CCNGG	2 cut(s)	264, 557
StyI	CCWWGG	3 cut(s)	16, 357, 649
TaaI	ACNGT	3 cut(s)	297, 929, 950
TasI	AATT	2 cut(s)	52, 610
TatI	WGTACW	2 cut(s)	285, 477
TauI	GCSGC	3 cut(s)	90, 782, 905
TfiI	GAWTC	2 cut(s)	403, 838
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	213, 302
TseFI	GTSAC	2 cut(s)	70, 448
Tsp45I	GTSAC	2 cut(s)	70, 448
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	2 cut(s)	213, 302
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	1 cut(s)	52
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.