Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005903

Physical Location & Seq

Genomic Coordinates Forward (+)

25679313 .. 25680417

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1221000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTTCTCTTAAAAAATCTTCCCAAGAAGACCCAAGGTCGAAAGAGGATCGAGATCAAGAAACTTGAGAACCTTAACAGCAAACAAGTCACCTTCTCCAAGCGCCGCGCTGGTATATTCAAGAAGGCTGCGGAACTGAGCGTTTTGTGCGGCGCTGATGTGGCGGTCATTGTTTTCTCGACAGCAGGAAAAGTGTTTTGCTATGGGCACCCTAGCATGGACACCATTCTAGACTGGTATTGCAGTGGGGTAACTCCTCCTGCAGTGTCTGATGATACGGCAGGAGATCAAAGCCCTAATAGGGTTCCCGTGGCAGAGTTCAACAAGGATTACATGGAGGCTATTAGGGAGTTGGAGGAACAGAAGAAGAGAGTTGCGGAGGTCAAAGAGGCGGCAAAGATGAAGAAGGTTGTGATGGGTGTAGTGGGTGGGTGTGATGAGAGGTTTTGGTGGGAGGATGAGAGTGTTGACTTGGATGCGTTGGATGTGCAGGAAGTCGAGCATTACTTGATCGCATTAGAGGATGTGAGGAAGAAGGTTGCTGCTAGGTTTCATGAGATGAAGATTTTGAATGGGACGTTGAACCCGGGGGCGCTTCCACCGATTCCAGCAGTTCATCGACTTTGTCATCTCCCAATGATGACAAATGGTTTTAGTGGTCACGGTGGCCAATTTGGTGGTGGTTATCATGCATGGGGTTTCACCATGTGCTTGTGGACGTGTGGTTTCTGCTATTGCTGTTCAGCTTGTTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04013 ko04022 ko04111 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04111 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

253

Amino Acids

27.97

Weight (kDa)

7.96

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	21 - 68	4.3e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005903)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40280 FvH4_4g35860
malus_domestica	MD02G1221000.v1.1 MD15G1322300.v1.1
prunus_persica	Prupe.2G120200_v2.0.a1
pyrus_communis	pycom02g18540
rosa_chinensis	RchiOBHm_Chr3g0480601 RchiOBHm_Chr4g0445441 RchiOBHm_Chr6g0300471
rosa_laevigata	RLG00000005740 RLG00000011335 RLG00000012216
rosa_multiflora	Rmu_sc0001476.1_g000003 Rmu_sc0001509.1_g000008
rosa_roxburghii	Rroxscaffold_5G00385950 Rroxscaffold_7G00167760
rosa_rugosa	Rorug04G0361300 Rorug06G0296300
rosa_samantha	Rh4AG422800 Rh4BG434800 Rh4CG449700 Rh4DG431000 Rh6AG408900 Rh6BG416200 Rh6CG423700 Rh6DG409400
rosa_wichuraiana	Rw4G036260 Rw6G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	1 cut(s)	108
AciI	CCGC	6 cut(s)	106, 131, 150, 164, 377, 392
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	667
AdeI	CACNNNGTG	1 cut(s)	708
AfiI	CCNNNNNNNGG	2 cut(s)	217, 301
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	121, 322, 571, 583
AhdI	GACNNNNNGTC	1 cut(s)	36
AjiI	CACGTC	1 cut(s)	720
AluBI	AGCT	1 cut(s)	746
AluI	AGCT	1 cut(s)	746
AlwI	GGATC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	2 cut(s)	128, 542
AspLEI	GCGC	4 cut(s)	105, 110, 155, 595
AsuC2I	CCSGG	2 cut(s)	587, 588
AsuHPI	GGTGA	2 cut(s)	82, 694
AvaI	CYCGRG	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	115, 529
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	587, 588
BfaI	CTAG	3 cut(s)	213, 230, 546
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	3 cut(s)	106, 156, 596
BisI	GCNGC	5 cut(s)	106, 129, 151, 393, 543
BlsI	GCNGC	5 cut(s)	107, 130, 152, 394, 544
Bme1390I	CCNGG	2 cut(s)	587, 588
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	720
BmiI	GGNNCC	2 cut(s)	209, 306
BmrFI	CCNGG	2 cut(s)	587, 588
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	587, 588
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	34, 309, 586, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 301
Bse1I	ACTGG	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	53
BseDI	CCNNGG	4 cut(s)	34, 309, 586, 587
BseGI	GGATG	4 cut(s)	463, 481, 490, 529
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	217, 301
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	115, 529
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	669
BshNI	GGYRCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	217, 301
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	669
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	48, 54, 286, 510
BspACI	CCGC	6 cut(s)	106, 131, 150, 164, 377, 392
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	209, 306
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	4 cut(s)	34, 309, 586, 587
BssMI	GATC	4 cut(s)	48, 54, 286, 510
BssT1I	CCWWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	463, 481, 490, 529
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	3 cut(s)	106, 156, 596
BstHHI	GCGC	4 cut(s)	105, 110, 155, 595
BstKTI	GATC	4 cut(s)	51, 57, 289, 513
BstMBI	GATC	4 cut(s)	48, 54, 286, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 161, 752
BstSCI	CCNGG	2 cut(s)	585, 586
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	115, 529
BstV2I	GAAGAC	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	677
BsuRI	GGCC	1 cut(s)	669
BtgI	CCRYGG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	720
BtsCI	GGATG	4 cut(s)	463, 481, 490, 529
BtsI	GCAGTG	2 cut(s)	250, 270
BtsIMutI	CAGTG	2 cut(s)	250, 270
CaiI	CAGNNNCTG	1 cut(s)	269
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	4 cut(s)	105, 110, 155, 595
Cfr9I	CCCGGG	1 cut(s)	586
CviAII	CATG	7 cut(s)	217, 334, 554, 689, 693, 706, 756
CviJI	RGCY	5 cut(s)	128, 294, 341, 669, 746
CviKI_1	RGCY	5 cut(s)	128, 294, 341, 669, 746
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	50, 56, 288, 512
DpnII	GATC	4 cut(s)	48, 54, 286, 510
DraIII	CACNNNGTG	1 cut(s)	708
DriI	GACNNNNNGTC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	362
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	7 cut(s)	220, 337, 557, 692, 696, 709, 759
FaiI	YATR	9 cut(s)	116, 204, 218, 335, 555, 690, 694, 707, 757
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	7 cut(s)	216, 333, 553, 688, 692, 705, 755
Fnu4HI	GCNGC	5 cut(s)	106, 129, 151, 393, 543
FokI	GGATG	4 cut(s)	470, 488, 497, 536
Fsp4HI	GCNGC	5 cut(s)	106, 129, 151, 393, 543
FspBI	CTAG	3 cut(s)	213, 230, 546
GlaI	GCGC	4 cut(s)	104, 109, 154, 594
GluI	GCNGC	5 cut(s)	106, 129, 151, 393, 543
HaeII	RGCGCY	3 cut(s)	106, 156, 596
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	4 cut(s)	105, 110, 155, 595
Hin1II	CATG	7 cut(s)	220, 337, 557, 692, 696, 709, 759
Hin6I	GCGC	4 cut(s)	103, 108, 153, 593
HinP1I	GCGC	4 cut(s)	103, 108, 153, 593
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	604
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	2 cut(s)	82, 694
Hpy166II	GTNNAC	2 cut(s)	469, 717
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	6 cut(s)	52, 58, 121, 178, 230, 554
Hpy8I	GTNNAC	2 cut(s)	469, 717
HpyAV	CCTTC	4 cut(s)	103, 118, 400, 529
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	2 cut(s)	578, 719
HpyCH4V	TGCA	4 cut(s)	243, 263, 490, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 161, 752
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	2 cut(s)	578, 719
Hsp92II	CATG	7 cut(s)	220, 337, 557, 692, 696, 709, 759
HspAI	GCGC	4 cut(s)	103, 108, 153, 593
Kzo9I	GATC	4 cut(s)	48, 54, 286, 510
LpnPI	CCDG	8 cut(s)	96, 171, 220, 267, 273, 476, 600, 621
Lsp1109I	GCAGC	2 cut(s)	115, 529
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	213, 230, 546
MaeII	ACGT	2 cut(s)	578, 719
MaeIII	GTNAC	3 cut(s)	88, 250, 659
MalI	GATC	4 cut(s)	50, 56, 288, 512
MboI	GATC	4 cut(s)	48, 54, 286, 510
MboII	GAAGA	7 cut(s)	11, 40, 376, 379, 415, 544, 574
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	1 cut(s)	671
MluNI	TGGCCA	1 cut(s)	669
MmeI	TCCRAC	2 cut(s)	333, 462
Mox20I	TGGCCA	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	2 cut(s)	11, 75
Msp20I	TGGCCA	1 cut(s)	669
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	587, 588
MteI	GCGCNGCGC	1 cut(s)	106
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	147, 161, 752
NciI	CCSGG	2 cut(s)	587, 588
NdeII	GATC	4 cut(s)	48, 54, 286, 510
NlaIII	CATG	7 cut(s)	220, 337, 557, 692, 696, 709, 759
NlaIV	GGNNCC	2 cut(s)	209, 306
NmuCI	GTSAC	2 cut(s)	88, 659
NsiI	ATGCAT	1 cut(s)	694
PagI	TCATGA	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	604
PflFI	GACNNNGTC	1 cut(s)	624
PkrI	GCNGC	5 cut(s)	107, 130, 152, 394, 544
PspN4I	GGNNCC	2 cut(s)	209, 306
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	11, 75
SatI	GCNGC	5 cut(s)	106, 129, 151, 393, 543
Sau3AI	GATC	4 cut(s)	48, 54, 286, 510
ScrFI	CCNGG	2 cut(s)	587, 588
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	261
SmaI	CCCGGG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	671
SsiI	CCGC	6 cut(s)	106, 131, 150, 164, 377, 392
SspMI	CTAG	3 cut(s)	213, 230, 546
StyD4I	CCNGG	2 cut(s)	585, 586
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	2 cut(s)	581, 722
TaqI	TCGA	5 cut(s)	40, 51, 179, 498, 619
TasI	AATT	1 cut(s)	671
TauI	GCSGC	3 cut(s)	108, 153, 395
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	2 cut(s)	11, 75
Tru9I	TTAA	2 cut(s)	11, 75
TscAI	CASTG	2 cut(s)	250, 270
TseFI	GTSAC	2 cut(s)	88, 659
TseI	GCWGC	2 cut(s)	128, 542
Tsp45I	GTSAC	2 cut(s)	88, 659
TspDTI	ATGAA	4 cut(s)	416, 542, 575, 605
TspMI	CCCGGG	1 cut(s)	586
TspRI	CASTG	2 cut(s)	250, 270
Tth111I	GACNNNGTC	1 cut(s)	624
XbaI	TCTAGA	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677
XmaI	CCCGGG	1 cut(s)	586
XspI	CTAG	3 cut(s)	213, 230, 546
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.