FvH4_2g40970

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009882
Physical Location & Seq
Forward (+)
29079093 .. 29084075
4983 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40970.t1

Sequence Viewer

Length: 2943 bp
ATGGCTAGCCGGCATGTCACGAAGCTCAGCAAATCGGCGATGGTTTTGGCGGCCATGAACGGCGCCTCCAGAACCTCAAGGAGAACCCTCACTCGGTGCCGTGAAACAGCAGTGGCTGCCGCCCCAAACCTTTCCCCGGCTCCCTTCTCTCGAGCCAGTAATGTCGTTTGGGATCCAAGTCATGTCGTTTTGGCAAACGCCTTCACTCGGAGCTTTCACTCCTCCGCTCCTCGTCTCTACTCCGCCAGCAGCAGCGCCGCTCAGGCTCAGCAGAACGAGTTCACTGAGATGGCGTGGGAGGGCATAATTGGGGCGGTTGAGGCCGCCAGAGTCAGCAAGCAACAGGTGGTGGAATCTGAGCACTTGATGAAAGCGCTTTTGGAGCAGAAGGATGGTTTGGCCAGGCGGATCTTCACCAAGGCTGGTCTGGACAACACTAGTGTTCTCCAGGCCACTGATGACTTCATTGCTCAGCAACCCAAGGTGATGGGTGGCACCAGTGGACCTATAATAGGCTCGCATCTGGGGGTTCTGTTGGACAATGCGCGACGGCAGAAGAAAGAAATGAATGATGATTTTGTGTCTGTGGAGCACCTGCTGTTGGCGTTTCAGTCGGATACACGGTTTGGGCAGCAATTGTTCAAAAACCTTCAGCTTAGCGAAAAGGATTTGAAGGAGGCTGTTAAACATGTTCGGGGAAACCAGAGAGTCACTGATCAGAATCCTGAAGGAAAATATGAGGCTTTGACAAAGTATGGAAATGACTTGACTGAGCTCGCCAGTCGTGGCAAACTTGATCCTGTTATTGGACGGGATGATGAAATACGGCGTTGCATCCAGATATTGTCCAGGAGAACAAAAAATAATCCCGTTATTATTGGGGAGCCTGGTGTGGGGAAAACAGCAATTGCTGAAGGATTAGCTCAACGGATTGTGCGTGGGGATGTTCCAGAACCCCTGTTGAACAGAAAGTTGATTTCCTTAGATATGGGTTCGTTGGTGGCTGGAGCCAAGTTTCGCGGTGACTTTGAGGAAAGATTGAAAGCTGTATTGAAGGAAGTTACTGCTTCAAATGGACAGATCATATTATTCATTGATGAGATTCACACTGTAGTAGGAGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGACGGGGTGAGCTACGGTGTATAGGAGCAACCACGTTGAATGAGTACAGAAAGTACATCGAGAAGGATCCTGCACTGGAACGAAGATTTCAGCAGGTGTTTTGTGGTCAGCCATCTGTCGAAGACACAATATCCATTCTCCGTGGGTTGCGTGAGCGCTATGAGCTGCATCATGGTGTGAAAATATCAGATAGTGCCCTTGTTTCTGCAGCAGTTCTTTCTGACAGATACATTACAGAACGGTTTTTACCTGACAAAGCTATTGATCTTGTTGATGAAGCTGCTGCAAAGCTAAAAATGGAGATTACCTCTAAGCCAACTGAGTTAGACGAGGTAGACAGAGCTATACTGAAATTGGAGATGGAGAAGCTATCTTTGCAAAATGACACAGATAAATCATCGAAAGAAAGGTTAAGCAAGCTGGAGAGTGACCTCGCATTGCTCAAACAGAAACAAAAAGAATTTAATGAACAGTGGGATCGTGAAAAGGCCCTCATGACTCGAATACGATCAATTAAAGAAGAGATTGATAGAGTAAACCAAGAGATGGAAGCTGCTGAACGTGCGTATGACCTAAGTCGTGCAGCAGAGCTCAAATATGGAACTCTCATGTCCCTGCAGCGCCAGTTAGAAGAGGCTGAGAAAAACCTTGCTGAGTACCAGAAGTCTGGAAAATCTTTTCTACGAGAAGAAGTCACCGATCTTGACATTGCTGAGATTGTAAGCAAATGGACTGGTATACCCTTGTCAAACCTTCAACAGTCAGAAAGAGACAAGCTAGTCATGCTAGAACAGGTACTTCATAAGAGGGTAGTGGGTCAAGATATAGCCGTGAAATCGGTAGCTGATGCAATTAGGCGTTCAAGGGCAGGTCTCTCGGACCCTAACCGCCCTATTGCAAGTTTTATGTTTTTGGGTCCTACTGGTGTGGGAAAAACAGAGCTTGGAAAGACCTTGGCCAGCTTCCTCTTCAACACTGAAAATGCTCTGGTTAGGATTGATATGAGTGAGTACATGGAGAAGCATGCAGTTTCACGTTTGGTGGGTGCCCCGCCTGGTTATGTTGGTTATGAAGAAGGCGGACAATTAACAGAAGTGGTTCGTCGAAGACCCTATTGTGTAGTGTTATTCGATGAAATAGAGAAAGCACATCAGGATGTGTTCAATATTTTGTTACAATTGCTGGATGATGGAAGGATTACCGATTCACAAGGAAGGACTGTAAGCTTCACCAATTGTGTTGTGATAATGACCTCAAATCTTGGCTCCCAGTATATACTCGAAACTCTTCGTAATACTCAAGACAGCAAGGATGCAGTTTATGAACTGATGAAAAGACAAGTGGTTGAACTGGCGAGACAAACTTTCCGCCCTGAGTTTTTGAATCGAGTCGATGAGTTCATCGTGTTCCAGCCTCTGGACTCCAAAGAGATCTGTAAGATTGTTGAGATACAGATGAACCGGTTGAAAGATAGGCTGAAGCAAAAGAAAATCGAGCTTCATTATACAGAGGAAGCTCTTGAGCTTCTTGGTAATTTGGGCTTCGATCCGAACTATGGAGCGAGGCCCGTTAAGAGGGTGATACAGCAGCTGGTTGAGAATGAGATTGCAATGGGAGTGTTGAGAGGAGATTACAGCGAGGAAGATTCGATCATTGTTGATGCTGAGGTGACCCCATCTGCCAAAGATATTCCTCCGCAGAAGCGGTTGCGCATCAGGAGAGTGGAGAACACTTCTTCCACGGTAGATGACATGGTTGCAAATGACTGA

Protein Analysis

981

Amino Acids

109.76

Weight (kDa)

6.38

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 93 - 216 3.1e-29 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 273 - 373 1.3e-06 SMAX1 nucleotide binding domain
AAA PF00004 292 - 423 8.2e-13 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 430 - 532 3.6e-35 AAA lid domain
AAA_2 PF07724 688 - 857 2.2e-68 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 693 - 814 1.2e-11 AAA domain (dynein-related subfamily)
AAA PF00004 694 - 822 3e-08 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 864 - 944 6.5e-24 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25140
fragaria_vesca FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica Prupe.1G392200_v2.0.a1
pyrus_communis pycom08g04820 pycom15g03540
rosa_chinensis RchiOBHm_Chr6g0299601
rosa_laevigata RLG00000011406
rosa_multiflora Rmu_sc0002895.1_g000001
rosa_roxburghii Rroxscaffold_7G00168520
rosa_rugosa Rorug06G0290800 Rorug06G0290900
rosa_samantha Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana Rw6G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 603, 1258
AasI GACNNNNNNGTC 1 cut(s) 1952
Acc16I TGCGCA 1 cut(s) 2885
Acc36I ACCTGC 3 cut(s) 603, 1258, 2033
AccB1I GGYRCC 4 cut(s) 62, 96, 494, 2219
AccB7I CCANNNNNTGG 3 cut(s) 1172, 1720, 2590
AccBSI CCGCTC 2 cut(s) 227, 260
AccI GTMKAC 2 cut(s) 1509, 1912
AccII CGCG 2 cut(s) 547, 1020
AclWI GGATC 8 cut(s) 167, 180, 416, 791, 1235, 1248, 1659, 2714
AcoI YGGCCR 3 cut(s) 51, 399, 2130
AcsI RAATTY 1 cut(s) 1634
AcuI CTGAAG 4 cut(s) 635, 747, 933, 2672
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 5 cut(s) 1220, 1229, 1832, 1971, 2186
AfeI AGCGCT 2 cut(s) 375, 1331
AflIII ACRYGT 1 cut(s) 688
AgeI ACCGGT 1 cut(s) 2634
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 5 cut(s) 401, 447, 848, 886, 2227
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 380, 394, 412
AloI GAACNNNNNNTCC 4 cut(s) 50, 82, 2894, 2926
Alw21I GWGCWC 4 cut(s) 363, 594, 777, 1767
Alw26I GTCTC 4 cut(s) 239, 1938, 2051, 2524
AlwI GGATC 8 cut(s) 167, 180, 416, 791, 1235, 1248, 1659, 2714
AlwNI CAGNNNCTG 3 cut(s) 116, 2590, 2764
Ama87I CYCGRG 1 cut(s) 150
Aor51HI AGCGCT 2 cut(s) 375, 1331
AoxI GGCC 7 cut(s) 51, 321, 399, 450, 1662, 2130, 2738
ApoI RAATTY 1 cut(s) 1634
AsiGI ACCGGT 1 cut(s) 2634
Asp700I GAANNNNTTC 3 cut(s) 278, 2271, 2460
AspLEI GCGC 7 cut(s) 65, 257, 376, 547, 1332, 1797, 2886
AspS9I GGNCC 5 cut(s) 503, 1663, 2053, 2090, 2739
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 8 cut(s) 406, 496, 1034, 1193, 1861, 2395, 2764, 2854
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 3 cut(s) 503, 2053, 2090
BaeGI GKGCMC 2 cut(s) 1372, 2224
BalI TGGCCA 2 cut(s) 401, 2132
BamHI GGATCC 2 cut(s) 172, 1240
BanI GGYRCC 4 cut(s) 62, 96, 494, 2219
BanII GRGCYC 2 cut(s) 777, 1767
BbsI GAAGAC 2 cut(s) 1302, 2287
Bbv12I GWGCWC 4 cut(s) 363, 594, 777, 1767
BbvCI CCTCAGC 1 cut(s) 2838
BccI CCATC 9 cut(s) 34, 283, 386, 481, 1294, 1528, 1714, 2357, 2857
BceAI ACGGC 5 cut(s) 76, 84, 566, 842, 1988
BcgI CGANNNNNNTGC 2 cut(s) 2031, 2065
BciT130I CCWGG 5 cut(s) 403, 449, 850, 888, 2229
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 1 cut(s) 715
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 4 cut(s) 239, 1938, 2051, 2524
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 4 cut(s) 6, 438, 1952, 1961
BfmI CTRYAG 3 cut(s) 1110, 1380, 1790
BfoI RGCGCY 5 cut(s) 66, 258, 377, 1333, 1798
BfuAI ACCTGC 3 cut(s) 603, 1258, 2033
BfuI GTATCC 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 2604
BlpI GCTNAGC 4 cut(s) 26, 267, 471, 656
Bme1390I CCNGG 6 cut(s) 137, 403, 449, 850, 888, 2229
Bme18I GGWCC 3 cut(s) 503, 2053, 2090
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 5 cut(s) 503, 1663, 2053, 2090, 2739
BmrFI CCNGG 6 cut(s) 137, 403, 449, 850, 888, 2229
BmrI ACTGGG 1 cut(s) 2437
BmsI GCATC 8 cut(s) 529, 843, 1135, 1351, 2011, 2476, 2824, 2895
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 2437
BoxI GACNNNNGTC 1 cut(s) 1749
BpiI GAAGAC 2 cut(s) 1302, 2287
BplI GAGNNNNNCTC 2 cut(s) 1466, 1498
BpmI CTGGAG 4 cut(s) 52, 431, 1026, 1616
Bpu10I CCTNAGC 2 cut(s) 261, 2838
Bpu1102I GCTNAGC 4 cut(s) 26, 267, 471, 656
BpuEI CTTGAG 3 cut(s) 61, 2457, 2714
BpuMI CCSGG 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 2051
BsaJI CCNNGG 6 cut(s) 135, 417, 480, 1315, 2127, 2913
BsaWI WCCGGW 1 cut(s) 2634
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse118I RCCGGY 2 cut(s) 9, 2634
Bse1I ACTGG 9 cut(s) 156, 498, 780, 1254, 1798, 1912, 2101, 2443, 2529
Bse3DI GCAATG 5 cut(s) 465, 1146, 1610, 1881, 2790
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 5 cut(s) 403, 449, 850, 888, 2229
BseDI CCNNGG 6 cut(s) 135, 417, 480, 1315, 2127, 2913
BseGI GGATG 8 cut(s) 397, 820, 834, 949, 1150, 2335, 2365, 2491
BseJI GATNNNNATC 1 cut(s) 720
BseMI GCAATG 5 cut(s) 465, 1146, 1610, 1881, 2790
BseNI ACTGG 9 cut(s) 156, 498, 780, 1254, 1798, 1912, 2101, 2443, 2529
BseRI GAGGAG 3 cut(s) 211, 219, 2814
BseSI GKGCMC 2 cut(s) 1372, 2224
BseYI CCCAGC 1 cut(s) 1148
BsgI GTGCAG 2 cut(s) 1230, 1776
Bsh1236I CGCG 2 cut(s) 547, 1020
BshFI GGCC 7 cut(s) 53, 323, 401, 452, 1664, 2132, 2740
BshNI GGYRCC 4 cut(s) 62, 96, 494, 2219
BshTI ACCGGT 1 cut(s) 2634
BsiHKAI GWGCWC 4 cut(s) 363, 594, 777, 1767
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 10, 137, 2635
BslFI GGGAC 1 cut(s) 1771
BsmAI GTCTC 4 cut(s) 239, 1938, 2051, 2524
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 1771
BsnI GGCC 7 cut(s) 53, 323, 401, 452, 1664, 2132, 2740
Bso31I GGTCTC 1 cut(s) 2051
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 6 cut(s) 363, 594, 777, 1372, 1767, 2224
Bsp1720I GCTNAGC 4 cut(s) 26, 267, 471, 656
BspANI GGCC 7 cut(s) 53, 323, 401, 452, 1664, 2132, 2740
BspFNI CGCG 2 cut(s) 547, 1020
BspHI TCATGA 1 cut(s) 1668
BspMAI CTGCAG 2 cut(s) 1384, 1794
BspMI ACCTGC 3 cut(s) 603, 1258, 2033
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 8 cut(s) 167, 180, 416, 791, 1235, 1248, 1659, 2714
BspT107I GGYRCC 4 cut(s) 62, 96, 494, 2219
BspTNI GGTCTC 1 cut(s) 2051
BsrBI CCGCTC 2 cut(s) 227, 260
BsrDI GCAATG 5 cut(s) 465, 1146, 1610, 1881, 2790
BsrFI RCCGGY 2 cut(s) 9, 2634
BsrI ACTGG 9 cut(s) 156, 498, 780, 1254, 1798, 1912, 2101, 2443, 2529
BssAI RCCGGY 2 cut(s) 9, 2634
BssECI CCNNGG 6 cut(s) 135, 417, 480, 1315, 2127, 2913
BssNAI GTATAC 1 cut(s) 1913
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 3 cut(s) 417, 480, 2127
Bst1107I GTATAC 1 cut(s) 1913
Bst2UI CCWGG 5 cut(s) 403, 449, 850, 888, 2229
Bst4CI ACNGT 8 cut(s) 624, 1111, 1191, 1416, 1647, 1935, 2395, 2917
Bst6I CTCTTC 4 cut(s) 1689, 1800, 2147, 2466
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 2 cut(s) 116, 1145
BstC8I GCNNGC 9 cut(s) 7, 11, 247, 338, 518, 777, 1592, 2134, 2199
BstDSI CCRYGG 2 cut(s) 1315, 2913
BstEII GGTNACC 1 cut(s) 2842
BstENI CCTNNNNNAGG 1 cut(s) 510
BstF5I GGATG 8 cut(s) 397, 820, 834, 949, 1150, 2335, 2365, 2491
BstFNI CGCG 2 cut(s) 547, 1020
BstH2I RGCGCY 5 cut(s) 66, 258, 377, 1333, 1798
BstHHI GCGC 7 cut(s) 65, 257, 376, 547, 1332, 1797, 2886
BstMAI GTCTC 4 cut(s) 239, 1938, 2051, 2524
BstMWI GCNNNNNNNGC 9 cut(s) 116, 263, 320, 382, 1145, 1336, 1549, 1736, 1957
BstNI CCWGG 5 cut(s) 403, 449, 850, 888, 2229
BstNSI RCATGY 3 cut(s) 17, 692, 2201
BstPAI GACNNNNGTC 1 cut(s) 1749
BstPI GGTNACC 1 cut(s) 2842
BstSCI CCNGG 6 cut(s) 135, 401, 447, 848, 886, 2227
BstSFI CTRYAG 3 cut(s) 1110, 1380, 1790
BstSLI GKGCMC 2 cut(s) 1372, 2224
BstUI CGCG 2 cut(s) 547, 1020
BstV2I GAAGAC 2 cut(s) 1302, 2287
BstX2I RGATCY 4 cut(s) 172, 408, 1240, 2604
BstXI CCANNNNNNTGG 2 cut(s) 487, 1841
BstYI RGATCY 4 cut(s) 172, 408, 1240, 2604
BstZ17I GTATAC 1 cut(s) 1913
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 7 cut(s) 53, 323, 401, 452, 1664, 2132, 2740
BtgI CCRYGG 2 cut(s) 1315, 2913
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 8 cut(s) 397, 820, 834, 949, 1150, 2335, 2365, 2491
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 9 cut(s) 117, 282, 453, 505, 711, 1107, 1247, 1652, 2148
BveI ACCTGC 3 cut(s) 603, 1258, 2033
Cac8I GCNNGC 9 cut(s) 7, 11, 247, 338, 518, 777, 1592, 2134, 2199
CaiI CAGNNNCTG 3 cut(s) 116, 2590, 2764
CciI TCATGA 1 cut(s) 1668
CfoI GCGC 7 cut(s) 65, 257, 376, 547, 1332, 1797, 2886
Cfr10I RCCGGY 2 cut(s) 9, 2634
Cfr13I GGNCC 5 cut(s) 503, 1663, 2053, 2090, 2739
Csp6I GTAC 5 cut(s) 1219, 1228, 1831, 1970, 2185
CspAI ACCGGT 1 cut(s) 2634
CviQI GTAC 5 cut(s) 1219, 1228, 1831, 1970, 2185
DinI GGCGCC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 96
DrdI GACNNNNNNGTC 1 cut(s) 1952
DseDI GACNNNNNNGTC 1 cut(s) 1952
EaeI YGGCCR 3 cut(s) 51, 399, 2130
Eam1104I CTCTTC 4 cut(s) 1689, 1800, 2147, 2466
EarI CTCTTC 4 cut(s) 1689, 1800, 2147, 2466
EciI GGCGGA 4 cut(s) 232, 421, 2268, 2531
Ecl136II GAGCTC 2 cut(s) 775, 1765
Eco130I CCWWGG 3 cut(s) 417, 480, 2127
Eco24I GRGCYC 2 cut(s) 777, 1767
Eco31I GGTCTC 1 cut(s) 2051
Eco47I GGWCC 3 cut(s) 503, 2053, 2090
Eco47III AGCGCT 2 cut(s) 375, 1331
Eco53kI GAGCTC 2 cut(s) 775, 1765
Eco57I CTGAAG 4 cut(s) 635, 747, 933, 2672
Eco88I CYCGRG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 2842
EcoICRI GAGCTC 2 cut(s) 775, 1765
EcoNI CCTNNNNNAGG 1 cut(s) 510
EcoO109I RGGNCCY 2 cut(s) 1663, 2090
EcoO65I GGTNACC 1 cut(s) 2842
EcoRII CCWGG 5 cut(s) 401, 447, 848, 886, 2227
EcoT14I CCWWGG 3 cut(s) 417, 480, 2127
EcoT38I GRGCYC 2 cut(s) 777, 1767
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 3 cut(s) 417, 480, 2127
Esp3I CGTCTC 1 cut(s) 239
FaqI GGGAC 1 cut(s) 1771
FauI CCCGC 1 cut(s) 2232
FbaI TGATCA 1 cut(s) 715
FblI GTMKAC 2 cut(s) 1509, 1912
FokI GGATG 8 cut(s) 404, 821, 827, 956, 1157, 2342, 2372, 2498
FriOI GRGCYC 2 cut(s) 777, 1767
FspBI CTAG 4 cut(s) 6, 438, 1952, 1961
FspI TGCGCA 1 cut(s) 2885
GlaI GCGC 7 cut(s) 64, 256, 375, 546, 1331, 1796, 2885
GsaI CCCAGC 1 cut(s) 1152
GsuI CTGGAG 4 cut(s) 52, 431, 1026, 1616
HaeII RGCGCY 5 cut(s) 66, 258, 377, 1333, 1798
HaeIII GGCC 7 cut(s) 53, 323, 401, 452, 1664, 2132, 2740
HapII CCGG 3 cut(s) 10, 137, 2635
HhaI GCGC 7 cut(s) 65, 257, 376, 547, 1332, 1797, 2886
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 7 cut(s) 63, 255, 374, 545, 1330, 1795, 2884
HinP1I GCGC 7 cut(s) 63, 255, 374, 545, 1330, 1795, 2884
HindIII AAGCTT 1 cut(s) 2398
HpaII CCGG 3 cut(s) 10, 137, 2635
HphI GGTGA 8 cut(s) 406, 496, 1034, 1193, 1861, 2395, 2764, 2854
Hpy166II GTNNAC 5 cut(s) 282, 503, 1510, 1711, 1913
Hpy188I TCNGA 9 cut(s) 210, 358, 616, 720, 1363, 1396, 1939, 2053, 2724
Hpy8I GTNNAC 5 cut(s) 282, 503, 1510, 1711, 1913
Hpy99I CGWCG 2 cut(s) 552, 2280
HpyCH4III ACNGT 8 cut(s) 624, 1111, 1191, 1416, 1647, 1935, 2395, 2917
HpyCH4IV ACGT 3 cut(s) 1208, 1735, 2209
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 263, 320, 382, 1145, 1336, 1549, 1736, 1957
HpySE526I ACGT 3 cut(s) 1208, 1735, 2209
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 7 cut(s) 63, 255, 374, 545, 1330, 1795, 2884
KasI GGCGCC 1 cut(s) 62
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 715
LweI GCATC 8 cut(s) 529, 843, 1135, 1351, 2011, 2476, 2824, 2895
MaeI CTAG 4 cut(s) 6, 438, 1952, 1961
MaeII ACGT 3 cut(s) 1208, 1735, 2209
MaeIII GTNAC 8 cut(s) 16, 709, 1022, 1060, 1601, 1867, 2346, 2842
MbiI CCGCTC 2 cut(s) 227, 260
MfeI CAATTG 4 cut(s) 635, 906, 2351, 2407
MflI RGATCY 4 cut(s) 172, 408, 1240, 2604
MhlI GDGCHC 6 cut(s) 363, 594, 777, 1372, 1767, 2224
MlsI TGGCCA 2 cut(s) 401, 2132
MluNI TGGCCA 2 cut(s) 401, 2132
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 5 cut(s) 339, 717, 1666, 2571, 2588
MmeI TCCRAC 2 cut(s) 516, 594
Mox20I TGGCCA 2 cut(s) 401, 2132
MroNI GCCGGC 1 cut(s) 9
MroXI GAANNNNTTC 3 cut(s) 278, 2271, 2460
MscI TGGCCA 2 cut(s) 401, 2132
MseI TTAA 6 cut(s) 684, 1586, 1638, 1689, 2261, 2745
MslI CAYNNNNRTG 3 cut(s) 287, 1347, 2328
Msp20I TGGCCA 2 cut(s) 401, 2132
MspA1I CMGCKG 1 cut(s) 2764
MspI CCGG 3 cut(s) 10, 137, 2635
MspR9I CCNGG 6 cut(s) 137, 403, 449, 850, 888, 2229
MunI CAATTG 4 cut(s) 635, 906, 2351, 2407
MvaI CCWGG 5 cut(s) 403, 449, 850, 888, 2229
MvnI CGCG 2 cut(s) 547, 1020
MwoI GCNNNNNNNGC 9 cut(s) 116, 263, 320, 382, 1145, 1336, 1549, 1736, 1957
NaeI GCCGGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 137
NgoMIV GCCGGC 1 cut(s) 9
NheI GCTAGC 1 cut(s) 5
NmuCI GTSAC 6 cut(s) 16, 709, 1022, 1601, 1867, 2842
NsbI TGCGCA 1 cut(s) 2885
NspI RCATGY 3 cut(s) 17, 692, 2201
PaeI GCATGC 1 cut(s) 2201
PaeR7I CTCGAG 1 cut(s) 150
PagI TCATGA 1 cut(s) 1668
PaqCI CACCTGC 2 cut(s) 603, 1258
PciI ACATGT 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 934
PdiI GCCGGC 1 cut(s) 11
PdmI GAANNNNTTC 3 cut(s) 278, 2271, 2460
PfeI GAWTC 6 cut(s) 353, 721, 1102, 2378, 2557, 2819
PflMI CCANNNNNTGG 3 cut(s) 1172, 1720, 2590
PfoI TCCNGGA 1 cut(s) 848
PinAI ACCGGT 1 cut(s) 2634
PleI GAGTC 5 cut(s) 338, 716, 1666, 2570, 2588
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 5 cut(s) 338, 716, 1666, 2570, 2588
PpuMI RGGWCCY 1 cut(s) 2090
PscI ACATGT 1 cut(s) 688
PshAI GACNNNNGTC 1 cut(s) 1749
Psp124BI GAGCTC 2 cut(s) 777, 1767
Psp5II RGGWCCY 1 cut(s) 2090
Psp6I CCWGG 5 cut(s) 401, 447, 848, 886, 2227
PspEI GGTNACC 1 cut(s) 2842
PspFI CCCAGC 1 cut(s) 1148
PspGI CCWGG 5 cut(s) 401, 447, 848, 886, 2227
PspPI GGNCC 5 cut(s) 503, 1663, 2053, 2090, 2739
PspPPI RGGWCCY 1 cut(s) 2090
PsrI GAACNNNNNNTAC 2 cut(s) 1404, 1436
PstI CTGCAG 2 cut(s) 1384, 1794
PstNI CAGNNNCTG 3 cut(s) 116, 2590, 2764
PsuI RGATCY 4 cut(s) 172, 408, 1240, 2604
PvuII CAGCTG 1 cut(s) 2764
RsaI GTAC 5 cut(s) 1220, 1229, 1832, 1971, 2186
RsaNI GTAC 5 cut(s) 1219, 1228, 1831, 1970, 2185
RseI CAYNNNNRTG 3 cut(s) 287, 1347, 2328
SacI GAGCTC 2 cut(s) 777, 1767
SaqAI TTAA 6 cut(s) 684, 1586, 1638, 1689, 2261, 2745
Sau96I GGNCC 5 cut(s) 503, 1663, 2053, 2090, 2739
SchI GAGTC 5 cut(s) 339, 717, 1666, 2571, 2588
ScrFI CCNGG 6 cut(s) 137, 403, 449, 850, 888, 2229
SduI GDGCHC 6 cut(s) 363, 594, 777, 1372, 1767, 2224
SfaNI GCATC 8 cut(s) 529, 843, 1135, 1351, 2011, 2476, 2824, 2895
SfcI CTRYAG 3 cut(s) 1110, 1380, 1790
SfoI GGCGCC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 150
SinI GGWCC 3 cut(s) 503, 2053, 2090
SlaI CTCGAG 1 cut(s) 150
SmiMI CAYNNNNRTG 3 cut(s) 287, 1347, 2328
SmlI CTYRAG 4 cut(s) 76, 150, 2472, 2693
SmoI CTYRAG 4 cut(s) 76, 150, 2472, 2693
SpeI ACTAGT 1 cut(s) 437
SphI GCATGC 1 cut(s) 2201
SspDI GGCGCC 1 cut(s) 62
SspI AATATT 1 cut(s) 2341
SspMI CTAG 4 cut(s) 6, 438, 1952, 1961
SstI GAGCTC 2 cut(s) 777, 1767
StyD4I CCNGG 6 cut(s) 135, 401, 447, 848, 886, 2227
StyI CCWWGG 3 cut(s) 417, 480, 2127
TaaI ACNGT 8 cut(s) 624, 1111, 1191, 1416, 1647, 1935, 2395, 2917
TaiI ACGT 3 cut(s) 1211, 1738, 2212
TatI WGTACW 3 cut(s) 1218, 1227, 2184
TauI GCSGC 4 cut(s) 53, 122, 260, 326
TfiI GAWTC 6 cut(s) 353, 721, 1102, 2378, 2557, 2819
Tru1I TTAA 6 cut(s) 684, 1586, 1638, 1689, 2261, 2745
Tru9I TTAA 6 cut(s) 684, 1586, 1638, 1689, 2261, 2745
TscAI CASTG 9 cut(s) 117, 289, 460, 505, 718, 1114, 1254, 1652, 2155
TseFI GTSAC 6 cut(s) 16, 709, 1022, 1601, 1867, 2842
Tsp45I GTSAC 6 cut(s) 16, 709, 1022, 1601, 1867, 2842
TspGWI ACGGA 2 cut(s) 943, 1304
TspRI CASTG 9 cut(s) 117, 289, 460, 505, 718, 1114, 1254, 1652, 2155
Van91I CCANNNNNTGG 3 cut(s) 1172, 1720, 2590
VpaK11BI GGWCC 3 cut(s) 503, 2053, 2090
XagI CCTNNNNNAGG 1 cut(s) 510
XapI RAATTY 1 cut(s) 1634
XceI RCATGY 3 cut(s) 17, 692, 2201
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 1509, 1912
XmnI GAANNNNTTC 3 cut(s) 278, 2271, 2460
XspI CTAG 4 cut(s) 6, 438, 1952, 1961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.