Rh6BG410100

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009882
Physical Location & Seq
Reverse (-)
63632889 .. 63637511
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG410100.1

Sequence Viewer

Length: 2940 bp
ATGGCTAGCCGGCAAGCGACGAAGCTCAGCAAATCGGCGATGGTTTTGGCGGCCATGAACGGCGCCTCCAAAACCTCAAGAAGTTCGCTCTCTCGGTGTCGTGAAACTGCGGTGGCTGCCTCCAAGTTTTCCATGGGCGGCGGCTCCGTCGCTCCCTTCAATGTCGTTTGGGATCGAAATCATGTCGTTTCGGCCAACACTCTGAGTCGGAGCTTTCACTCTTCGGGTCCTCGTTTCAACTCCGCCAGCAGCGCTGCTCAGGCTCAGCAGAATGAGTTCACTGAGATGGCATGGGAGGGCATAATTGGGGCTGTGGAAGCCGCCAGAAATAGCAAGCAACAAGTGGTGGAATCCGAGCACTTGATGAAAGCTGTCTTGGAGCAGAAGGATGGTTTGGCCAGGAGAATCTTCACCAAGGCTGGTGTAGACAACACCACTGTTCTCCAGGCCACCGATGACTTCATTGCTCAGCAACCCAAGGTGATGGGTGCGACCAGTGGACCTATAATAGGCACACATCTCGGCGCTCTGTTGGAGAATGCCCGAAGGCAGAAGAAAGAAATGAATGATGATTTTGTGTCTGTGGAGCACCTTGTGTTGGCGTTTCAGTCCGACACACGGTTTGGGCAGCAATTGTTCAAAAACCTCCAGCTTACTGACAAGGATTTGAAGGAGGCTGTTAAACATGTTCGTGGAAATCAGAGAGTCACTGATCAAAATCCTGAAGGGAAATATGAGGCTTTGACTAAATATGGGAACGACTTGACTGAGCTCGCCAGTCGTGGCAAACTTGATCCAGTTATTGGTCGGGATGATGAAATACGGCGTTGTATCCAAATACTGTCCAGGAGAACAAAAAATAATCCTGTTATTATTGGAGAGCCTGGTGTCGGAAAAACTGCAATCGCTGAAGGATTAGCTCAACGGATTGTGCGTGGGGATGTTCCGGAACCCCTTTTGAACAGAAAGTTGATTTCTTTAGATATGGGTTCATTGGTCGCTGGAGCCAAGTTTCGCGGTGACTTTGAGGAAAGATTGAAAGCTGTATTGAAGGAAGTTACTGCTTCAAATGGACAGATCATATTATTCATTGATGAGATTCATACTGTTGTAGGAGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGGCGGGGTGAACTACGGTGTATAGGAGCAACCACTTTGAATGAGTACAGAAAATACATTGAGAAGGATCCTGCACTGGAGCGTAGGTTTCAGCAGGTTTTTTGTGGTCAGCCATCTGTCGAAGACACAATATCCATTCTTCGTGGGTTGCGTGAGCGGTACGAGCTGCATCATGGTGTGAAAATATCAGATAGTGCCCTTGTTTCTGCAGCAGTTCTTTCTGACAGATACATTACAGAACGATTTTTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAAATGGAGATCACATCCAAGCCAACTGAGTTAGATGAGGTAGACAGAGCTGTACTGAAGTTGGAGATGGAGAAGCTATCTTTGCAAAATGACACAGATAAATCATCGAAAGAAAGGTTAAGCAAGCTGGAGAGTGACCTCGCATTGCTCAAACAGAAACAAAAAGAATTTAATGAACAGTGGGATCGTGAGAAGGCTCTCATGACTCGAATACGATCAATTAAAGAAGAGATTGATAGAGTAAACCAAGAGATGGAAGCTGCTGAACGTGCATATGACCTAAGTCGTGCTGCTGAGCTCAAATATGGAACTCTAATGTCCCTGCAACGCCAGTTAGAAGAGGCTGAGAAAAACCTTTCTGAGTACCAGAAGTCTGGAAAATCTTTCCTACGAGAAGAAGTCACCGATCTTGATATTGCTGAGATTGTAAGCAAATGGACTGGTATACCTTTGTCAAACCTTCAACAGTCGGAAAGAGACAAGCTAGTCATGCTAGAACAGGTACTTCATAAGAGGGTAGTGGGTCAAGATATAGCCGTGAAATCGGTAGCTGATGCAATCAGACGTTCAAGGGCTGGTCTATCAGACCCAAACCGACCTATTGCAAGTTTCATGTTTTTGGGACCTACTGGTGTGGGGAAAACAGAGCTTGCAAAGGCCTTGGCCAGCTATCTCTTCAACACAGAAAATGCTCTGGTTAGGATTGATATGAGTGAGTACATGGAAAAGCATGCAGTTTCACGTTTGGTGGGTGCTCCGCCTGGTTATGTTGGTTATGAAGAAGGTGGACAACTAACAGAAGTGGTTCGTCGAAGACCCTATTGTGTAGTGCTATTCGATGAAATAGAGAAAGCACATCAGGATGTGTTCAATATTTTGTTACAATTGCTGGATGATGGAAGGATAACCGACTCACAAGGAAGGACTGTAAGCTTCACCAATTGTGTTGTGATAATGACCTCAAATCTTGGCTCCCACTATATACTTGAAACTCTTCGTAATACTCAAGACAGCAAGGATGCAGTTTATGAGTTGATGAAAAGACAAGTGGTTGAATTGGCGAGACAGACTTTCCGCCCTGAGTTTTTGAATCGAGTTGATGAGTTTATCGTGTTCCAGCCTTTGGACTCCAAAGAGATCTGTAACATTGTTGACATACAGATGAACCGGGTTAAAGATAGGCTGAAGCAAAAGAAAATCGAGCTTCATTATACAAAGGAAGCTGTGGAGCTTCTTGGTAAATTGGGCTTTGATCCGAACTTTGGAGCAAGGCCAGTAAAGAGGGTGATACAGCAGCTGGTTGAGAATGAAATTGCAATGGGACTGTTGAGAGGCGATTTCAGTGAGGAGGATGCGATCATTGTTGATGCTGAGGTGTCCCCATCCGCCAAAGATATTCCTCCACAGAAGAGGTTGCGCATCAGGAAATTGGAGAATGCTTCTTCTAGTGTAGATAACATGGTTGCGAATGACTGA

Protein Analysis

979

Amino Acids

109.34

Weight (kDa)

6.77

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 92 - 215 9.7e-29 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 272 - 372 1.3e-06 SMAX1 nucleotide binding domain
AAA PF00004 291 - 422 8.1e-13 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 429 - 531 5.8e-35 AAA lid domain
AAA_2 PF07724 687 - 856 6.8e-69 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 692 - 813 3.5e-12 AAA domain (dynein-related subfamily)
AAA PF00004 693 - 815 3.1e-10 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 863 - 943 1.7e-23 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25140
fragaria_vesca FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica Prupe.1G392200_v2.0.a1
pyrus_communis pycom08g04820 pycom15g03540
rosa_chinensis RchiOBHm_Chr6g0299601
rosa_laevigata RLG00000011406
rosa_multiflora Rmu_sc0002895.1_g000001
rosa_roxburghii Rroxscaffold_7G00168520
rosa_rugosa Rorug06G0290800 Rorug06G0290900
rosa_samantha Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana Rw6G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1949
Acc16I TGCGCA 1 cut(s) 2882
Acc36I ACCTGC 1 cut(s) 1255
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 4 cut(s) 803, 1169, 1717, 2587
AccBSI CCGCTC 1 cut(s) 1327
AccI GTMKAC 3 cut(s) 426, 1506, 1909
AccII CGCG 1 cut(s) 1017
AccIII TCCGGA 1 cut(s) 946
AclWI GGATC 6 cut(s) 180, 788, 1232, 1245, 1656, 2711
AcoI YGGCCR 4 cut(s) 51, 192, 396, 2127
AcsI RAATTY 1 cut(s) 1631
AcuI CTGAAG 4 cut(s) 744, 930, 1541, 2669
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 595
AfaI GTAC 6 cut(s) 1217, 1331, 1518, 1829, 1968, 2183
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 9 cut(s) 509, 598, 618, 803, 890, 1169, 1717, 2587, 2726
AflIII ACRYGT 1 cut(s) 685
AjnI CCWGG 5 cut(s) 398, 444, 845, 883, 2224
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 377, 391, 409
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
Alw21I GWGCWC 5 cut(s) 360, 591, 774, 1764, 2221
Alw26I GTCTC 2 cut(s) 1935, 2521
AlwI GGATC 6 cut(s) 180, 788, 1232, 1245, 1656, 2711
AlwNI CAGNNNCTG 1 cut(s) 2761
Aor13HI TCCGGA 1 cut(s) 946
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 7 cut(s) 51, 192, 396, 447, 2121, 2127, 2735
ApoI RAATTY 1 cut(s) 1631
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
Asp700I GAANNNNTTC 3 cut(s) 275, 2268, 2457
AspLEI GCGC 4 cut(s) 65, 254, 527, 2883
AspS9I GGNCC 3 cut(s) 227, 500, 2087
AsuC2I CCSGG 1 cut(s) 2633
AsuHPI GGTGA 7 cut(s) 403, 493, 1031, 1190, 1858, 2392, 2761
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 3 cut(s) 227, 500, 2087
BaeGI GKGCMC 1 cut(s) 1369
BalI TGGCCA 2 cut(s) 398, 2129
BamHI GGATCC 1 cut(s) 1237
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 2 cut(s) 774, 1764
BbsI GAAGAC 2 cut(s) 1299, 2284
Bbv12I GWGCWC 5 cut(s) 360, 591, 774, 1764, 2221
BbvCI CCTCAGC 1 cut(s) 2835
BccI CCATC 9 cut(s) 34, 280, 383, 478, 1291, 1525, 1711, 2354, 2854
BceAI ACGGC 3 cut(s) 76, 839, 1985
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 5 cut(s) 400, 446, 847, 885, 2226
BciVI GTATCC 1 cut(s) 842
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 1 cut(s) 2633
BcoDI GTCTC 2 cut(s) 1935, 2521
BfaI CTAG 4 cut(s) 6, 1949, 1958, 2910
BfmI CTRYAG 1 cut(s) 1377
BfoI RGCGCY 3 cut(s) 66, 255, 528
BfuAI ACCTGC 1 cut(s) 1255
BfuI GTATCC 1 cut(s) 842
BglII AGATCT 1 cut(s) 2601
BlpI GCTNAGC 4 cut(s) 26, 264, 468, 1758
Bme1390I CCNGG 6 cut(s) 400, 446, 847, 885, 2226, 2633
Bme18I GGWCC 3 cut(s) 227, 500, 2087
BmgT120I GGNCC 3 cut(s) 227, 500, 2087
BmiI GGNNCC 8 cut(s) 64, 145, 228, 951, 1006, 1239, 2088, 2437
BmrFI CCNGG 6 cut(s) 400, 446, 847, 885, 2226, 2633
BmsI GCATC 7 cut(s) 1132, 1348, 2008, 2473, 2806, 2821, 2892
BmtI GCTAGC 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 1746
BpiI GAAGAC 2 cut(s) 1299, 2284
BpmI CTGGAG 5 cut(s) 428, 632, 1023, 1268, 1613
Bpu10I CCTNAGC 2 cut(s) 258, 2835
Bpu1102I GCTNAGC 4 cut(s) 26, 264, 468, 1758
BpuEI CTTGAG 2 cut(s) 61, 2454
BpuMI CCSGG 1 cut(s) 2633
BsaBI GATNNNNATC 2 cut(s) 177, 717
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 132, 414, 477, 2124
BsaWI WCCGGW 1 cut(s) 946
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 1241, 1271
Bsc4I CCNNNNNNNGG 9 cut(s) 509, 598, 618, 803, 890, 1169, 1717, 2587, 2726
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 8 cut(s) 495, 777, 797, 1251, 1795, 1909, 2098, 2738
Bse3DI GCAATG 4 cut(s) 462, 1143, 1607, 2787
Bse8I GATNNNNATC 2 cut(s) 177, 717
BseAI TCCGGA 1 cut(s) 946
BseBI CCWGG 5 cut(s) 400, 446, 847, 885, 2226
BseDI CCNNGG 4 cut(s) 132, 414, 477, 2124
BseJI GATNNNNATC 2 cut(s) 177, 717
BseLI CCNNNNNNNGG 9 cut(s) 509, 598, 618, 803, 890, 1169, 1717, 2587, 2726
BseMI GCAATG 4 cut(s) 462, 1143, 1607, 2787
BseNI ACTGG 8 cut(s) 495, 777, 797, 1251, 1795, 1909, 2098, 2738
BseRI GAGGAG 1 cut(s) 2825
BseSI GKGCMC 1 cut(s) 1369
BseYI CCCAGC 1 cut(s) 1145
BsgI GTGCAG 1 cut(s) 1227
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 7 cut(s) 53, 194, 398, 449, 2123, 2129, 2737
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 5 cut(s) 360, 591, 774, 1764, 2221
BsiSI CCGG 3 cut(s) 10, 947, 2632
BslFI GGGAC 4 cut(s) 1768, 2100, 2799, 2827
BslI CCNNNNNNNGG 9 cut(s) 509, 598, 618, 803, 890, 1169, 1717, 2587, 2726
BsmAI GTCTC 2 cut(s) 1935, 2521
BsmFI GGGAC 4 cut(s) 1768, 2100, 2799, 2827
BsmI GAATGC 2 cut(s) 544, 2905
BsnI GGCC 7 cut(s) 53, 194, 398, 449, 2123, 2129, 2737
Bsp1286I GDGCHC 6 cut(s) 360, 591, 774, 1369, 1764, 2221
Bsp13I TCCGGA 1 cut(s) 946
Bsp1720I GCTNAGC 4 cut(s) 26, 264, 468, 1758
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 7 cut(s) 53, 194, 398, 449, 2123, 2129, 2737
BspEI TCCGGA 1 cut(s) 946
BspFNI CGCG 1 cut(s) 1017
BspHI TCATGA 1 cut(s) 1665
BspLI GGNNCC 8 cut(s) 64, 145, 228, 951, 1006, 1239, 2088, 2437
BspMAI CTGCAG 1 cut(s) 1381
BspMI ACCTGC 1 cut(s) 1255
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 6 cut(s) 180, 788, 1232, 1245, 1656, 2711
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 1327
BsrDI GCAATG 4 cut(s) 462, 1143, 1607, 2787
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 8 cut(s) 495, 777, 797, 1251, 1795, 1909, 2098, 2738
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 4 cut(s) 132, 414, 477, 2124
BssNAI GTATAC 1 cut(s) 1910
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 4 cut(s) 132, 414, 477, 2124
Bst1107I GTATAC 1 cut(s) 1910
Bst2UI CCWGG 5 cut(s) 400, 446, 847, 885, 2226
Bst4CI ACNGT 9 cut(s) 439, 621, 843, 1108, 1188, 1644, 1932, 2392, 2790
Bst6I CTCTTC 6 cut(s) 226, 1686, 1797, 2144, 2463, 2867
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstDSI CCRYGG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 507
BstFNI CGCG 1 cut(s) 1017
BstH2I RGCGCY 3 cut(s) 66, 255, 528
BstHHI GCGC 4 cut(s) 65, 254, 527, 2883
BstMAI GTCTC 2 cut(s) 1935, 2521
BstMWI GCNNNNNNNGC 9 cut(s) 116, 251, 260, 317, 1142, 1333, 1546, 1733, 1954
BstNI CCWGG 5 cut(s) 400, 446, 847, 885, 2226
BstNSI RCATGY 2 cut(s) 689, 2198
BstPAI GACNNNNGTC 1 cut(s) 1746
BstSCI CCNGG 6 cut(s) 398, 444, 845, 883, 2224, 2631
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 1 cut(s) 1369
BstUI CGCG 1 cut(s) 1017
BstV2I GAAGAC 2 cut(s) 1299, 2284
BstX2I RGATCY 2 cut(s) 1237, 2601
BstXI CCANNNNNNTGG 2 cut(s) 484, 1838
BstYI RGATCY 2 cut(s) 1237, 2601
BstZ17I GTATAC 1 cut(s) 1910
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 7 cut(s) 53, 194, 398, 449, 2123, 2129, 2737
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 53
BtsIMutI CAGTG 7 cut(s) 279, 435, 502, 708, 1244, 1649, 2812
BveI ACCTGC 1 cut(s) 1255
CaiI CAGNNNCTG 1 cut(s) 2761
CciI TCATGA 1 cut(s) 1665
CfoI GCGC 4 cut(s) 65, 254, 527, 2883
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 227, 500, 2087
Csp6I GTAC 6 cut(s) 1216, 1330, 1517, 1828, 1967, 2182
CviQI GTAC 6 cut(s) 1216, 1330, 1517, 1828, 1967, 2182
DinI GGCGCC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 595
DrdI GACNNNNNNGTC 1 cut(s) 1949
DseDI GACNNNNNNGTC 1 cut(s) 1949
EaeI YGGCCR 4 cut(s) 51, 192, 396, 2127
Eam1104I CTCTTC 6 cut(s) 226, 1686, 1797, 2144, 2463, 2867
EarI CTCTTC 6 cut(s) 226, 1686, 1797, 2144, 2463, 2867
EciI GGCGGA 4 cut(s) 232, 2211, 2528, 2839
Ecl136II GAGCTC 2 cut(s) 772, 1762
Eco130I CCWWGG 4 cut(s) 132, 414, 477, 2124
Eco147I AGGCCT 1 cut(s) 2123
Eco24I GRGCYC 2 cut(s) 774, 1764
Eco47I GGWCC 3 cut(s) 227, 500, 2087
Eco47III AGCGCT 1 cut(s) 253
Eco53kI GAGCTC 2 cut(s) 772, 1762
Eco57I CTGAAG 4 cut(s) 744, 930, 1541, 2669
EcoICRI GAGCTC 2 cut(s) 772, 1762
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoO109I RGGNCCY 2 cut(s) 227, 2087
EcoRII CCWGG 5 cut(s) 398, 444, 845, 883, 2224
EcoT14I CCWWGG 4 cut(s) 132, 414, 477, 2124
EcoT38I GRGCYC 2 cut(s) 774, 1764
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 4 cut(s) 132, 414, 477, 2124
FaqI GGGAC 4 cut(s) 1768, 2100, 2799, 2827
FauI CCCGC 1 cut(s) 1167
FauNDI CATATG 1 cut(s) 1738
FbaI TGATCA 1 cut(s) 712
FblI GTMKAC 3 cut(s) 426, 1506, 1909
FriOI GRGCYC 2 cut(s) 774, 1764
FspBI CTAG 4 cut(s) 6, 1949, 1958, 2910
FspI TGCGCA 1 cut(s) 2882
GlaI GCGC 4 cut(s) 64, 253, 526, 2882
GsaI CCCAGC 1 cut(s) 1149
GsuI CTGGAG 5 cut(s) 428, 632, 1023, 1268, 1613
HaeII RGCGCY 3 cut(s) 66, 255, 528
HaeIII GGCC 7 cut(s) 53, 194, 398, 449, 2123, 2129, 2737
HapII CCGG 3 cut(s) 10, 947, 2632
HhaI GCGC 4 cut(s) 65, 254, 527, 2883
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 4 cut(s) 63, 252, 525, 2881
HinP1I GCGC 4 cut(s) 63, 252, 525, 2881
HincII GTYRAC 1 cut(s) 2617
HindII GTYRAC 1 cut(s) 2617
HindIII AAGCTT 1 cut(s) 2395
HinfI GANTC 9 cut(s) 205, 350, 405, 705, 1099, 1669, 2375, 2554, 2591
HpaII CCGG 3 cut(s) 10, 947, 2632
HphI GGTGA 7 cut(s) 403, 493, 1031, 1190, 1858, 2392, 2761
Hpy166II GTNNAC 9 cut(s) 279, 427, 500, 1181, 1507, 1708, 1910, 2252, 2617
Hpy8I GTNNAC 9 cut(s) 279, 427, 500, 1181, 1507, 1708, 1910, 2252, 2617
Hpy99I CGWCG 3 cut(s) 22, 152, 2277
HpyCH4III ACNGT 9 cut(s) 439, 621, 843, 1108, 1188, 1644, 1932, 2392, 2790
HpyCH4IV ACGT 3 cut(s) 1732, 2029, 2206
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 251, 260, 317, 1142, 1333, 1546, 1733, 1954
HpySE526I ACGT 3 cut(s) 1732, 2029, 2206
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 4 cut(s) 63, 252, 525, 2881
KasI GGCGCC 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 946
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 712
LweI GCATC 7 cut(s) 1132, 1348, 2008, 2473, 2806, 2821, 2892
MaeI CTAG 4 cut(s) 6, 1949, 1958, 2910
MaeII ACGT 3 cut(s) 1732, 2029, 2206
MaeIII GTNAC 7 cut(s) 706, 1019, 1057, 1598, 1864, 2343, 2606
MbiI CCGCTC 1 cut(s) 1327
MfeI CAATTG 3 cut(s) 632, 2348, 2404
MflI RGATCY 2 cut(s) 1237, 2601
MhlI GDGCHC 6 cut(s) 360, 591, 774, 1369, 1764, 2221
MlsI TGGCCA 2 cut(s) 398, 2129
MluNI TGGCCA 2 cut(s) 398, 2129
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 5 cut(s) 214, 714, 1663, 2369, 2585
MmeI TCCRAC 6 cut(s) 188, 513, 636, 871, 1506, 1914
Mox20I TGGCCA 2 cut(s) 398, 2129
MroI TCCGGA 1 cut(s) 946
MroNI GCCGGC 1 cut(s) 9
MroXI GAANNNNTTC 3 cut(s) 275, 2268, 2457
MscI TGGCCA 2 cut(s) 398, 2129
MseI TTAA 5 cut(s) 681, 1583, 1635, 1686, 2637
MslI CAYNNNNRTG 5 cut(s) 284, 690, 1344, 2325, 2624
Msp20I TGGCCA 2 cut(s) 398, 2129
MspA1I CMGCKG 1 cut(s) 2761
MspI CCGG 3 cut(s) 10, 947, 2632
MspR9I CCNGG 6 cut(s) 400, 446, 847, 885, 2226, 2633
MunI CAATTG 3 cut(s) 632, 2348, 2404
Mva1269I GAATGC 2 cut(s) 544, 2905
MvaI CCWGG 5 cut(s) 400, 446, 847, 885, 2226
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 9 cut(s) 116, 251, 260, 317, 1142, 1333, 1546, 1733, 1954
NaeI GCCGGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 2633
NcoI CCATGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 1738
NgoMIV GCCGGC 1 cut(s) 9
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 8 cut(s) 64, 145, 228, 951, 1006, 1239, 2088, 2437
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 4 cut(s) 706, 1019, 1598, 1864
NsbI TGCGCA 1 cut(s) 2882
NspI RCATGY 2 cut(s) 689, 2198
PaeI GCATGC 1 cut(s) 2198
PagI TCATGA 1 cut(s) 1665
PceI AGGCCT 1 cut(s) 2123
PciI ACATGT 1 cut(s) 685
PcsI WCGNNNNNNNCGW 2 cut(s) 931, 1318
PctI GAATGC 2 cut(s) 544, 2905
PdiI GCCGGC 1 cut(s) 11
PdmI GAANNNNTTC 3 cut(s) 275, 2268, 2457
PfeI GAWTC 4 cut(s) 350, 405, 1099, 2554
PflMI CCANNNNNTGG 4 cut(s) 803, 1169, 1717, 2587
PfoI TCCNGGA 1 cut(s) 845
PleI GAGTC 5 cut(s) 213, 713, 1663, 2369, 2585
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 5 cut(s) 213, 713, 1663, 2369, 2585
PpuMI RGGWCCY 2 cut(s) 227, 2087
PscI ACATGT 1 cut(s) 685
PshAI GACNNNNGTC 1 cut(s) 1746
Psp124BI GAGCTC 2 cut(s) 774, 1764
Psp5II RGGWCCY 2 cut(s) 227, 2087
Psp6I CCWGG 5 cut(s) 398, 444, 845, 883, 2224
PspFI CCCAGC 1 cut(s) 1145
PspGI CCWGG 5 cut(s) 398, 444, 845, 883, 2224
PspN4I GGNNCC 8 cut(s) 64, 145, 228, 951, 1006, 1239, 2088, 2437
PspPI GGNCC 3 cut(s) 227, 500, 2087
PspPPI RGGWCCY 2 cut(s) 227, 2087
PstI CTGCAG 1 cut(s) 1381
PstNI CAGNNNCTG 1 cut(s) 2761
PsuI RGATCY 2 cut(s) 1237, 2601
PvuII CAGCTG 1 cut(s) 2761
RsaI GTAC 6 cut(s) 1217, 1331, 1518, 1829, 1968, 2183
RsaNI GTAC 6 cut(s) 1216, 1330, 1517, 1828, 1967, 2182
RseI CAYNNNNRTG 5 cut(s) 284, 690, 1344, 2325, 2624
SacI GAGCTC 2 cut(s) 774, 1764
SaqAI TTAA 5 cut(s) 681, 1583, 1635, 1686, 2637
Sau96I GGNCC 3 cut(s) 227, 500, 2087
SchI GAGTC 5 cut(s) 214, 714, 1663, 2369, 2585
ScrFI CCNGG 6 cut(s) 400, 446, 847, 885, 2226, 2633
SduI GDGCHC 6 cut(s) 360, 591, 774, 1369, 1764, 2221
SfaNI GCATC 7 cut(s) 1132, 1348, 2008, 2473, 2806, 2821, 2892
SfcI CTRYAG 1 cut(s) 1377
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 3 cut(s) 227, 500, 2087
SmiMI CAYNNNNRTG 5 cut(s) 284, 690, 1344, 2325, 2624
SmlI CTYRAG 2 cut(s) 76, 2469
SmoI CTYRAG 2 cut(s) 76, 2469
SphI GCATGC 1 cut(s) 2198
SseBI AGGCCT 1 cut(s) 2123
SspDI GGCGCC 1 cut(s) 62
SspI AATATT 1 cut(s) 2338
SspMI CTAG 4 cut(s) 6, 1949, 1958, 2910
SstI GAGCTC 2 cut(s) 774, 1764
StuI AGGCCT 1 cut(s) 2123
StyD4I CCNGG 6 cut(s) 398, 444, 845, 883, 2224, 2631
StyI CCWWGG 4 cut(s) 132, 414, 477, 2124
TaaI ACNGT 9 cut(s) 439, 621, 843, 1108, 1188, 1644, 1932, 2392, 2790
TaiI ACGT 3 cut(s) 1735, 2032, 2209
TaqI TCGA 8 cut(s) 175, 1290, 1571, 1672, 2275, 2301, 2557, 2664
TatI WGTACW 3 cut(s) 1215, 1516, 2181
TauI GCSGC 4 cut(s) 53, 141, 144, 323
TfiI GAWTC 4 cut(s) 350, 405, 1099, 2554
Tru1I TTAA 5 cut(s) 681, 1583, 1635, 1686, 2637
Tru9I TTAA 5 cut(s) 681, 1583, 1635, 1686, 2637
TscAI CASTG 7 cut(s) 286, 442, 502, 715, 1251, 1649, 2812
TseFI GTSAC 4 cut(s) 706, 1019, 1598, 1864
Tsp45I GTSAC 4 cut(s) 706, 1019, 1598, 1864
TspGWI ACGGA 2 cut(s) 136, 940
TspRI CASTG 7 cut(s) 286, 442, 502, 715, 1251, 1649, 2812
Van91I CCANNNNNTGG 4 cut(s) 803, 1169, 1717, 2587
VpaK11BI GGWCC 3 cut(s) 227, 500, 2087
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 1 cut(s) 1631
XceI RCATGY 2 cut(s) 689, 2198
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 3 cut(s) 426, 1506, 1909
XmnI GAANNNNTTC 3 cut(s) 275, 2268, 2457
XspI CTAG 4 cut(s) 6, 1949, 1958, 2910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.