MD08G1058100.v1.1

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0009882
Physical Location & Seq
Reverse (-)
4650897 .. 4655725
4829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1058100.v1.1.491

Sequence Viewer

Length: 2952 bp
ATGGCGAGCAGGAGAGCCACCACAATGCTCACCAAGTCGGCCCTGGCCTTGGCGTACCTGAACGCCTCCACCAGAAACTCCCTCTCTCATCAGTGTCGCGCGATCGCCGTCGCCGGCTCCTCCCGCGCCTTCGGAAGCTCCGCCGCTCCCTTCTCTCGCCCCGGCATCGTTTCGGATAGGGGAAATGTCGCTTCGGCCAAGTATTTGGCAAGCGCCTTCACTCGCAGCTTCCACTCTACGACTCCCAATTTCTACTCCGCCACGAGCTCCTCCCAGGTCAGTCAGAATGAGTTCACTGAGATGGCGTGGGAGGGCATTGTGGGTGCCGTTGAAGCTGCCCGAAATAGCAAGCAGCAGGTGGTGGAAACTGAGCACTTGATGAAATCGCTTTTGGAGCAGAAGGATGGTTTGGCCCGGAGAATTCTCACCAAGGCGGGTCTCGACAACACTACGGTTCTTCAAGCAACTGACGAGTTCATTGATAAGCAGCCCAAGGTGACGGGTGGCACCAGTGGCCCTATAATGGGTTCGCATCTGGTTGGCTTGTTGGACAATGCCCGACGGCAGAAGAAAGATATGAAAGATGATTTTGTGTCGGTGGAGCACCTTGTGTTGGCGTTTCAGGCCGATGCACGGTTTGGGCAGCAATTGTTCAGAAACCTCCAGCTTAGTGATAAGGATTTGAAGGAGGCTGTTAAAGATGTTCGTGGAAATCAAAGAGTCACTGATCAAAATCCTGAAGGAAAGTATGAGGCCTTGGATAAGTACGGGAGTGACTTGACTGAACTCGCTAGGCGGGGCAAACTTGATCCTGTTATTGGCCGAGATGATGAAATACGGCGGTGTATCCAGATATTGTCTAGGAGAACGAAGAATAATCCTGTTATTATTGGTGAGCCTGGTGTAGGAAAAACTGCAATTGCTGAAGGATTAGCTCAACGGATTGTACGTGGGGATGTTCCAGAACCGCTATTGAATAGAAAGTTGATTTCCTTAGATATGGGATCATTGGTTGCTGGTGCCAAGTTTCGTGGGGATTTTGAGGAAAGGTTGAAAGCTGTTCTGAAGGAAGTTACTGCTTCTAATGGACAGATTATACTATTTATTGATGAGATTCATACTGTTGTAGGAGCAGGGGCTACAAGTGGTGCGATGGATGCTGGAAACTTGTTGAAACCAATGCTTGGGCGAGGTGAACTTCGGTGTATAGGAGCAACTACATTAAATGAGTACAGAAAATACATTGAGAAGGATGCTGCACTTGAGCGTAGATTTCAACAAGTATTTTGTGGCCAGCCATCTGTGGAAGACACAATATCCATTCTTCGTGGCTTGCGTGAGCGCTATGAACTGCATCATGGTGTGAAAATATCGGATAGTGCTCTTGTTTCTGCAGCAGTTCTCTCAGACAGATACATTACAGAACGTTTTTTGCCTGACAAAGCCATTGATCTCGTTGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACTTCTAAGCCAACCGAGTTGGATGAGGTAGACCGAGCTGTGTTGAAGTTGGAGATGGAGAAGCTATCAGTGCAAAATGACACTGATAAATCATCGAAAGAAAGGCTAAGCAAGTTGGAAAGTGACCTGGCAGTGCTGAAACAGAAACAGAAAGAGCTAAATGAACAATGGGATCGTGAGAAGGCTCTCATGACTCGCATACGATCAATTAAAGAAGAAATTGATAGAGTAAACCAAGAGATGGAAGCTGCTGAACGTGACTACGACCTAAATCGTGCTGCTGAGCTCAAATATGGAACTCTAATGTCCCTACAACGCCAGTTAGAAGAGGCTGAGAACAACCTTGCTGAGTATCGGAAGTCTGGAAACTCTATGCTTCGTGAAGAGGTCACAGATATTGATATTGCTGAAATTGTAAGCAAATGGACTGGTATACCCTTGTCAAACCTTCAACAATCAGAAAGAGACAAGCTGGTTAAGCTGGAAGAGGTCCTTCACAATAGGGTGATTGGTCAGGATATAGCTGTGAAATCTGTAGCTGATGCAATTCGACGTTCAAGGGCAGGTCTCTCTGACCCAAATCGACCAATAGCAAGTTTTATGTTTATGGGTCCTACTGGTGTGGGAAAAACCGAGCTTGCAAAGGCCTTGGCTGGCTATCTCTTCAACACAGAAAATGCACTTGTCAGAATTGATATGAGTGAGTACATGGAAAAACATGCAGTTTCACGCTTGGTTGGGGCACCGCCTGGTTACGTTGGTTTCGAAGAAGGTGGGCAGCTAACAGAAGTGGTTCGTCGAAGACCTTATTGTGTAGTGCTATTCGATGAAATTGAGAAAGCGCATCACGATGTCTTCAACATTTTGTTACAACTGTTGGATGATGGGAGGATAACCGACTCTCAAGGGCGAACTGTAAGCTTCACCAATTGCGTTGTCATAATGACCTCAAACCTGGGCTCCCACTACATACTCGAAACTCTTCGTAGCGCACGCGACAGCAAGGAGGCAGTTTATGAAGTGATGAAAAATCAGGTCGTCGAGTTGGCAAGACAAACTTTCCGCCCTGAATTCATGAACCGAATCGATGAGTATATTGTGTTCCAGCCTTTGGATTCGAAGGAGATCGCTAAAATTGTTGAGATACAGATGAACCGACTGAAAGACAGGCTGAAGCAGAGGAAAATCGATCTTCATTACACAAAGGAAGCCGTGGAGCTTCTCGGGACATTAGGCTTTGATCCGAACTACGGCGCAAGGCCGGTGAAGCGGGTGATACAACAGTTGGTTGAGAATGAAATTGCAATGGGAGTCCTGAGAGGAGATTTCAACGAGGAAGACACGCTTATCGTCGATGCCGAGGCGTCCCCCTCGGCCAAAGACCTTCCTCCCCAGAAGAGGCTGCGGATCAAGAAATTGGAAAGCAGTTCAGCTGCAGATGCCATGGTTGTGAACGACTGA

Protein Analysis

984

Amino Acids

109.68

Weight (kDa)

6.38

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 97 - 217 4.1e-30 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 277 - 377 1.3e-06 SMAX1 nucleotide binding domain
AAA PF00004 296 - 413 1.1e-12 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 434 - 536 1.2e-34 AAA lid domain
AAA_2 PF07724 692 - 861 1.9e-68 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 697 - 818 2e-11 AAA domain (dynein-related subfamily)
AAA PF00004 698 - 826 5e-10 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 868 - 948 8.5e-24 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25140
fragaria_vesca FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica Prupe.1G392200_v2.0.a1
pyrus_communis pycom08g04820 pycom15g03540
rosa_chinensis RchiOBHm_Chr6g0299601
rosa_laevigata RLG00000011406
rosa_multiflora Rmu_sc0002895.1_g000001
rosa_roxburghii Rroxscaffold_7G00168520
rosa_rugosa Rorug06G0290800 Rorug06G0290900
rosa_samantha Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana Rw6G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 2 cut(s) 346, 2045
AccB1I GGYRCC 4 cut(s) 323, 506, 1019, 2233
AccB7I CCANNNNNTGG 3 cut(s) 1184, 1732, 2602
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 2 cut(s) 1521, 1924
AccII CGCG 4 cut(s) 99, 101, 126, 2487
AclI AACGTT 1 cut(s) 1426
AclWI GGATC 5 cut(s) 803, 1012, 1671, 2726, 2906
AcoI YGGCCR 4 cut(s) 195, 820, 1291, 2865
AcsI RAATTY 2 cut(s) 420, 2561
AcuI CTGAAG 5 cut(s) 759, 945, 1085, 1499, 2684
AcyI GRCGYC 1 cut(s) 2855
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 5 cut(s) 56, 767, 948, 1232, 2198
AfeI AGCGCT 1 cut(s) 1343
AjnI CCWGG 6 cut(s) 42, 273, 898, 1617, 2239, 2445
AjuI GAANNNNNNNTTGG 4 cut(s) 374, 392, 406, 424
Alw21I GWGCWC 5 cut(s) 269, 375, 606, 1384, 1779
Alw26I GTCTC 3 cut(s) 443, 1950, 2063
AlwI GGATC 5 cut(s) 803, 1012, 1671, 2726, 2906
Ama87I CYCGRG 1 cut(s) 2714
Aor51HI AGCGCT 1 cut(s) 1343
ApoI RAATTY 2 cut(s) 420, 2561
AsiSI GCGATCGC 1 cut(s) 105
Asp700I GAANNNNTTC 3 cut(s) 290, 2283, 2472
AspLEI GCGC 7 cut(s) 101, 128, 215, 1344, 2335, 2483, 2747
AspS9I GGNCC 5 cut(s) 40, 412, 515, 1981, 2102
AsuC2I CCSGG 2 cut(s) 162, 415
AsuHPI GGTGA 9 cut(s) 22, 418, 508, 905, 1205, 2008, 2407, 2767, 2776
AsuII TTCGAA 2 cut(s) 2256, 2609
AvaI CYCGRG 1 cut(s) 2714
AvaII GGWCC 2 cut(s) 1981, 2102
BaeGI GKGCMC 1 cut(s) 2236
BaeI ACNNNNGTAYC 2 cut(s) 2759, 2792
BalI TGGCCA 1 cut(s) 1293
BanI GGYRCC 4 cut(s) 323, 506, 1019, 2233
BanII GRGCYC 3 cut(s) 269, 1779, 2453
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 4 cut(s) 1314, 2299, 2338, 2835
Bbv12I GWGCWC 5 cut(s) 269, 375, 606, 1384, 1779
BccI CCATC 8 cut(s) 295, 398, 1147, 1306, 1477, 1540, 1726, 2369
BceAI ACGGC 6 cut(s) 92, 311, 578, 854, 2687, 2758
BciT130I CCWGG 6 cut(s) 44, 275, 900, 1619, 2241, 2447
BciVI GTATCC 1 cut(s) 857
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 2 cut(s) 162, 415
BcoDI GTCTC 3 cut(s) 443, 1950, 2063
BfaI CTAG 2 cut(s) 792, 861
BfmI CTRYAG 3 cut(s) 1392, 2025, 2925
BfoI RGCGCY 2 cut(s) 216, 1345
BfuAI ACCTGC 2 cut(s) 346, 2045
BfuI GTATCC 1 cut(s) 857
BlpI GCTNAGC 2 cut(s) 1598, 1773
Bme1390I CCNGG 8 cut(s) 44, 162, 275, 415, 900, 1619, 2241, 2447
Bme18I GGWCC 2 cut(s) 1981, 2102
BmeT110I CYCGRG 1 cut(s) 2714
BmgT120I GGNCC 5 cut(s) 40, 412, 515, 1981, 2102
BmiI GGNNCC 7 cut(s) 118, 325, 508, 1021, 2103, 2235, 2452
BmrFI CCNGG 8 cut(s) 44, 162, 275, 415, 900, 1619, 2241, 2447
BpiI GAAGAC 4 cut(s) 1314, 2299, 2338, 2835
BpmI CTGGAG 1 cut(s) 647
Bpu1102I GCTNAGC 2 cut(s) 1598, 1773
Bpu14I TTCGAA 2 cut(s) 2256, 2609
BpuEI CTTGAG 2 cut(s) 1283, 2379
BpuMI CCSGG 2 cut(s) 162, 415
Bsa29I ATCGAT 2 cut(s) 2577, 2679
BsaAI YACGTR 1 cut(s) 950
BsaBI GATNNNNATC 2 cut(s) 732, 1487
BsaHI GRCGYC 1 cut(s) 2855
BsaI GGTCTC 2 cut(s) 443, 2063
BsaXI ACNNNNNCTCC 2 cut(s) 2435, 2465
Bse118I RCCGGY 2 cut(s) 113, 2752
Bse1I ACTGG 4 cut(s) 510, 1810, 1924, 2113
Bse3DI GCAATG 1 cut(s) 2802
Bse8I GATNNNNATC 2 cut(s) 732, 1487
BseBI CCWGG 6 cut(s) 44, 275, 900, 1619, 2241, 2447
BseCI ATCGAT 2 cut(s) 2577, 2679
BseGI GGATG 6 cut(s) 409, 961, 1162, 1258, 1519, 2377
BseJI GATNNNNATC 2 cut(s) 732, 1487
BseMI GCAATG 1 cut(s) 2802
BseMII CTCAG 7 cut(s) 288, 360, 1419, 1764, 1815, 1830, 2798
BseNI ACTGG 4 cut(s) 510, 1810, 1924, 2113
BseRI GAGGAG 3 cut(s) 109, 259, 2826
BseSI GKGCMC 1 cut(s) 2236
BsgI GTGCAG 1 cut(s) 1242
Bsh1236I CGCG 4 cut(s) 99, 101, 126, 2487
Bsh1285I CGRYCG 1 cut(s) 105
BshNI GGYRCC 4 cut(s) 323, 506, 1019, 2233
BshVI ATCGAT 2 cut(s) 2577, 2679
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 5 cut(s) 269, 375, 606, 1384, 1779
BsiHKCI CYCGRG 1 cut(s) 2714
BsiSI CCGG 4 cut(s) 114, 162, 415, 2753
BslFI GGGAC 3 cut(s) 1783, 2731, 2842
BsmAI GTCTC 3 cut(s) 443, 1950, 2063
BsmFI GGGAC 3 cut(s) 1783, 2731, 2842
Bso31I GGTCTC 2 cut(s) 443, 2063
BsoBI CYCGRG 1 cut(s) 2714
Bsp119I TTCGAA 2 cut(s) 2256, 2609
Bsp1286I GDGCHC 7 cut(s) 269, 375, 606, 1384, 1779, 2236, 2453
Bsp1720I GCTNAGC 2 cut(s) 1598, 1773
Bsp19I CCATGG 1 cut(s) 2934
BspCNI CTCAG 7 cut(s) 289, 361, 1418, 1765, 1816, 1831, 2799
BspDI ATCGAT 2 cut(s) 2577, 2679
BspFNI CGCG 4 cut(s) 99, 101, 126, 2487
BspHI TCATGA 2 cut(s) 1680, 2565
BspLI GGNNCC 7 cut(s) 118, 325, 508, 1021, 2103, 2235, 2452
BspMAI CTGCAG 2 cut(s) 1396, 2929
BspMI ACCTGC 2 cut(s) 346, 2045
BspPI GGATC 5 cut(s) 803, 1012, 1671, 2726, 2906
BspT104I TTCGAA 2 cut(s) 2256, 2609
BspT107I GGYRCC 4 cut(s) 323, 506, 1019, 2233
BspTNI GGTCTC 2 cut(s) 443, 2063
BsrBI CCGCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 2802
BsrFI RCCGGY 2 cut(s) 113, 2752
BsrI ACTGG 4 cut(s) 510, 1810, 1924, 2113
BssAI RCCGGY 2 cut(s) 113, 2752
BssNAI GTATAC 1 cut(s) 1925
BssNI GRCGYC 1 cut(s) 2855
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 6 cut(s) 48, 429, 492, 756, 2139, 2934
Bst1107I GTATAC 1 cut(s) 1925
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 6 cut(s) 44, 275, 900, 1619, 2241, 2447
Bst4CI ACNGT 6 cut(s) 454, 636, 1123, 2367, 2407, 2775
Bst6I CTCTTC 6 cut(s) 1812, 1869, 1971, 2159, 2478, 2882
BstACI GRCGYC 1 cut(s) 2855
BstBAI YACGTR 1 cut(s) 950
BstBI TTCGAA 2 cut(s) 2256, 2609
BstC8I GCNNGC 9 cut(s) 7, 115, 211, 350, 1295, 1334, 2130, 2146, 2485
BstDSI CCRYGG 2 cut(s) 2703, 2934
BstENI CCTNNNNNAGG 1 cut(s) 903
BstF5I GGATG 6 cut(s) 409, 961, 1162, 1258, 1519, 2377
BstFNI CGCG 4 cut(s) 99, 101, 126, 2487
BstH2I RGCGCY 2 cut(s) 216, 1345
BstHHI GCGC 7 cut(s) 101, 128, 215, 1344, 2335, 2483, 2747
BstMAI GTCTC 3 cut(s) 443, 1950, 2063
BstMCI CGRYCG 1 cut(s) 105
BstNI CCWGG 6 cut(s) 44, 275, 900, 1619, 2241, 2447
BstNSI RCATGY 1 cut(s) 2213
BstSCI CCNGG 8 cut(s) 42, 160, 273, 413, 898, 1617, 2239, 2445
BstSFI CTRYAG 3 cut(s) 1392, 2025, 2925
BstSLI GKGCMC 1 cut(s) 2236
BstUI CGCG 4 cut(s) 99, 101, 126, 2487
BstV2I GAAGAC 4 cut(s) 1314, 2299, 2338, 2835
BstXI CCANNNNNNTGG 1 cut(s) 205
BstZ17I GTATAC 1 cut(s) 1925
Bsu15I ATCGAT 2 cut(s) 2577, 2679
BsuI GTATCC 1 cut(s) 857
BsuTUI ATCGAT 2 cut(s) 2577, 2679
BtgI CCRYGG 2 cut(s) 2703, 2934
BtgZI GCGATG 1 cut(s) 1166
BtsCI GGATG 6 cut(s) 409, 961, 1162, 1258, 1519, 2377
BtsI GCAGTG 1 cut(s) 1629
BtsIMutI CAGTG 7 cut(s) 98, 294, 517, 723, 1566, 1572, 1629
BveI ACCTGC 2 cut(s) 346, 2045
Cac8I GCNNGC 9 cut(s) 7, 115, 211, 350, 1295, 1334, 2130, 2146, 2485
CciI TCATGA 2 cut(s) 1680, 2565
CfoI GCGC 7 cut(s) 101, 128, 215, 1344, 2335, 2483, 2747
Cfr10I RCCGGY 2 cut(s) 113, 2752
Cfr13I GGNCC 5 cut(s) 40, 412, 515, 1981, 2102
ClaI ATCGAT 2 cut(s) 2577, 2679
CseI GACGC 1 cut(s) 2844
Csp6I GTAC 5 cut(s) 55, 766, 947, 1231, 2197
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 6 cut(s) 1358, 1681, 2200, 2210, 2566, 2935
CviQI GTAC 5 cut(s) 55, 766, 947, 1231, 2197
DraIII CACNNNGTG 1 cut(s) 610
EaeI YGGCCR 4 cut(s) 195, 820, 1291, 2865
Eam1104I CTCTTC 6 cut(s) 1812, 1869, 1971, 2159, 2478, 2882
EarI CTCTTC 6 cut(s) 1812, 1869, 1971, 2159, 2478, 2882
EciI GGCGGA 3 cut(s) 130, 247, 2543
Ecl136II GAGCTC 2 cut(s) 267, 1777
Eco130I CCWWGG 6 cut(s) 48, 429, 492, 756, 2139, 2934
Eco147I AGGCCT 2 cut(s) 755, 2138
Eco24I GRGCYC 3 cut(s) 269, 1779, 2453
Eco31I GGTCTC 2 cut(s) 443, 2063
Eco47I GGWCC 2 cut(s) 1981, 2102
Eco47III AGCGCT 1 cut(s) 1343
Eco53kI GAGCTC 2 cut(s) 267, 1777
Eco57I CTGAAG 5 cut(s) 759, 945, 1085, 1499, 2684
Eco88I CYCGRG 1 cut(s) 2714
EcoICRI GAGCTC 2 cut(s) 267, 1777
EcoNI CCTNNNNNAGG 1 cut(s) 903
EcoO109I RGGNCCY 2 cut(s) 1981, 2102
EcoRI GAATTC 2 cut(s) 420, 2561
EcoRII CCWGG 6 cut(s) 42, 273, 898, 1617, 2239, 2445
EcoT14I CCWWGG 6 cut(s) 48, 429, 492, 756, 2139, 2934
EcoT38I GRGCYC 3 cut(s) 269, 1779, 2453
ErhI CCWWGG 6 cut(s) 48, 429, 492, 756, 2139, 2934
FaeI CATG 6 cut(s) 1361, 1684, 2203, 2213, 2569, 2938
FalI AAGNNNNNCTT 6 cut(s) 1968, 2000, 2533, 2565, 2820, 2852
FaqI GGGAC 3 cut(s) 1783, 2731, 2842
FatI CATG 6 cut(s) 1357, 1680, 2199, 2209, 2565, 2934
FauI CCCGC 4 cut(s) 131, 427, 789, 2754
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 2 cut(s) 1521, 1924
FokI GGATG 6 cut(s) 416, 968, 1169, 1265, 1526, 2384
FriOI GRGCYC 3 cut(s) 269, 1779, 2453
FspBI CTAG 2 cut(s) 792, 861
GlaI GCGC 7 cut(s) 100, 127, 214, 1343, 2334, 2482, 2746
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 2 cut(s) 216, 1345
HapII CCGG 4 cut(s) 114, 162, 415, 2753
HgaI GACGC 1 cut(s) 2844
HhaI GCGC 7 cut(s) 101, 128, 215, 1344, 2335, 2483, 2747
Hin1I GRCGYC 1 cut(s) 2855
Hin1II CATG 6 cut(s) 1361, 1684, 2203, 2213, 2569, 2938
Hin6I GCGC 7 cut(s) 99, 126, 213, 1342, 2333, 2481, 2745
HinP1I GCGC 7 cut(s) 99, 126, 213, 1342, 2333, 2481, 2745
HindIII AAGCTT 1 cut(s) 2410
HinfI GANTC 8 cut(s) 241, 720, 1114, 1684, 2390, 2574, 2606, 2802
HpaII CCGG 4 cut(s) 114, 162, 415, 2753
HphI GGTGA 9 cut(s) 22, 418, 508, 905, 1205, 2008, 2407, 2767, 2776
Hpy166II GTNNAC 6 cut(s) 294, 1196, 1522, 1723, 1925, 2944
Hpy8I GTNNAC 6 cut(s) 294, 1196, 1522, 1723, 1925, 2944
Hpy99I CGWCG 6 cut(s) 113, 564, 2046, 2292, 2534, 2846
HpyCH4III ACNGT 6 cut(s) 454, 636, 1123, 2367, 2407, 2775
HpyCH4IV ACGT 5 cut(s) 949, 1426, 1747, 2044, 2247
HpySE526I ACGT 5 cut(s) 949, 1426, 1747, 2044, 2247
Hsp92I GRCGYC 1 cut(s) 2855
Hsp92II CATG 6 cut(s) 1361, 1684, 2203, 2213, 2569, 2938
HspAI GCGC 7 cut(s) 99, 126, 213, 1342, 2333, 2481, 2745
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 727
MaeI CTAG 2 cut(s) 792, 861
MaeII ACGT 5 cut(s) 949, 1426, 1747, 2044, 2247
MaeIII GTNAC 9 cut(s) 496, 721, 773, 1072, 1613, 1748, 1879, 2243, 2358
MbiI CCGCTC 1 cut(s) 146
MfeI CAATTG 3 cut(s) 647, 918, 2419
MhlI GDGCHC 7 cut(s) 269, 375, 606, 1384, 1779, 2236, 2453
MlsI TGGCCA 1 cut(s) 1293
MluNI TGGCCA 1 cut(s) 1293
MlyI GAGTC 5 cut(s) 235, 729, 1678, 2384, 2811
MmeI TCCRAC 5 cut(s) 528, 1491, 1521, 1587, 2349
Mox20I TGGCCA 1 cut(s) 1293
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 3 cut(s) 290, 2283, 2472
MscI TGGCCA 1 cut(s) 1293
MseI TTAA 4 cut(s) 696, 1223, 1701, 1968
MslI CAYNNNNRTG 5 cut(s) 23, 299, 1359, 2340, 2939
Msp20I TGGCCA 1 cut(s) 1293
MspA1I CMGCKG 1 cut(s) 2924
MspI CCGG 4 cut(s) 114, 162, 415, 2753
MspR9I CCNGG 8 cut(s) 44, 162, 275, 415, 900, 1619, 2241, 2447
MunI CAATTG 3 cut(s) 647, 918, 2419
MvaI CCWGG 6 cut(s) 44, 275, 900, 1619, 2241, 2447
MvnI CGCG 4 cut(s) 99, 101, 126, 2487
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 162, 415
NcoI CCATGG 1 cut(s) 2934
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 6 cut(s) 1361, 1684, 2203, 2213, 2569, 2938
NlaIV GGNNCC 7 cut(s) 118, 325, 508, 1021, 2103, 2235, 2452
NmeAIII GCCGAG 3 cut(s) 848, 2843, 2875
NmuCI GTSAC 6 cut(s) 496, 721, 773, 1613, 1748, 1879
NspI RCATGY 1 cut(s) 2213
NspV TTCGAA 2 cut(s) 2256, 2609
PagI TCATGA 2 cut(s) 1680, 2565
PaqCI CACCTGC 1 cut(s) 346
PceI AGGCCT 2 cut(s) 755, 2138
PcsI WCGNNNNNNNCGW 4 cut(s) 946, 1333, 2253, 2847
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 3 cut(s) 290, 2283, 2472
PfeI GAWTC 3 cut(s) 1114, 2574, 2606
PflMI CCANNNNNTGG 3 cut(s) 1184, 1732, 2602
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 5 cut(s) 235, 728, 1678, 2384, 2810
PpsI GAGTC 5 cut(s) 235, 728, 1678, 2384, 2810
Ppu21I YACGTR 1 cut(s) 950
PpuMI RGGWCCY 2 cut(s) 1981, 2102
Psp124BI GAGCTC 2 cut(s) 269, 1779
Psp1406I AACGTT 1 cut(s) 1426
Psp5II RGGWCCY 2 cut(s) 1981, 2102
Psp6I CCWGG 6 cut(s) 42, 273, 898, 1617, 2239, 2445
PspGI CCWGG 6 cut(s) 42, 273, 898, 1617, 2239, 2445
PspN4I GGNNCC 7 cut(s) 118, 325, 508, 1021, 2103, 2235, 2452
PspPI GGNCC 5 cut(s) 40, 412, 515, 1981, 2102
PspPPI RGGWCCY 2 cut(s) 1981, 2102
PsrI GAACNNNNNNTAC 2 cut(s) 2576, 2608
PstI CTGCAG 2 cut(s) 1396, 2929
PvuI CGATCG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 2924
RgaI GCGATCGC 1 cut(s) 105
RsaI GTAC 5 cut(s) 56, 767, 948, 1232, 2198
RsaNI GTAC 5 cut(s) 55, 766, 947, 1231, 2197
RseI CAYNNNNRTG 5 cut(s) 23, 299, 1359, 2340, 2939
SacI GAGCTC 2 cut(s) 269, 1779
SaqAI TTAA 4 cut(s) 696, 1223, 1701, 1968
Sau96I GGNCC 5 cut(s) 40, 412, 515, 1981, 2102
SchI GAGTC 5 cut(s) 235, 729, 1678, 2384, 2811
ScrFI CCNGG 8 cut(s) 44, 162, 275, 415, 900, 1619, 2241, 2447
SduI GDGCHC 7 cut(s) 269, 375, 606, 1384, 1779, 2236, 2453
SfaAI GCGATCGC 1 cut(s) 105
SfcI CTRYAG 3 cut(s) 1392, 2025, 2925
SfuI TTCGAA 2 cut(s) 2256, 2609
SgfI GCGATCGC 1 cut(s) 105
SinI GGWCC 2 cut(s) 1981, 2102
SmiMI CAYNNNNRTG 5 cut(s) 23, 299, 1359, 2340, 2939
SmlI CTYRAG 2 cut(s) 1262, 2394
SmoI CTYRAG 2 cut(s) 1262, 2394
SseBI AGGCCT 2 cut(s) 755, 2138
SspMI CTAG 2 cut(s) 792, 861
SstI GAGCTC 2 cut(s) 269, 1779
StuI AGGCCT 2 cut(s) 755, 2138
StyD4I CCNGG 8 cut(s) 42, 160, 273, 413, 898, 1617, 2239, 2445
StyI CCWWGG 6 cut(s) 48, 429, 492, 756, 2139, 2934
TaaI ACNGT 6 cut(s) 454, 636, 1123, 2367, 2407, 2775
TaiI ACGT 5 cut(s) 952, 1429, 1750, 2047, 2250
TaqII GACCGA 1 cut(s) 1539
TatI WGTACW 2 cut(s) 1230, 2196
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 3 cut(s) 1114, 2574, 2606
Tru1I TTAA 4 cut(s) 696, 1223, 1701, 1968
Tru9I TTAA 4 cut(s) 696, 1223, 1701, 1968
TscAI CASTG 7 cut(s) 98, 301, 517, 730, 1566, 1579, 1629
TseFI GTSAC 6 cut(s) 496, 721, 773, 1613, 1748, 1879
Tsp45I GTSAC 6 cut(s) 496, 721, 773, 1613, 1748, 1879
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 7 cut(s) 98, 301, 517, 730, 1566, 1579, 1629
Van91I CCANNNNNTGG 3 cut(s) 1184, 1732, 2602
VpaK11BI GGWCC 2 cut(s) 1981, 2102
XagI CCTNNNNNAGG 1 cut(s) 903
XapI RAATTY 2 cut(s) 420, 2561
XceI RCATGY 1 cut(s) 2213
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 1521, 1924
XmnI GAANNNNTTC 3 cut(s) 290, 2283, 2472
XspI CTAG 2 cut(s) 792, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.