Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009882

Physical Location & Seq

Genomic Coordinates Forward (+)

2171432 .. 2173757

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCGAGCAGGAGAGCCACCACGACACTCACCAAGTCGGCCCTAATTCTGGCGTCCCTGAACGCCACTGAATCCTCGAGAATCCCTCTCTCTCGGAGTCGGGCAATCGCCGTCGCCGCATCTGCCCGGACCTTCGGCAGCTCTGCCGTTCCCTTCTCTCGCCCCAGCTTTGTTCCCGAGAGCAGAAATGTAGCTTCGGCCAAGTATTTGGCAAGCGCCTTCACTCGCAGCTTCCACTCTACGACTCCCAATTTCTCCTCCGCCACGAGCTCCTCTCAGGCCAATCAAAATGAGTTAACTGAGATGGCGTGGGAGGACATTGTTGGTGCCGTTGACGCCGCCCGAAATAGCAAGCAGCAGGTGGTGGAGTCTGAGCACTTGATGAAAGCGCTTTTGGAGCAGAAAGATGGTTTGGCCCGGAGAATTTTCACGAAGGCTGGGCTCGACAACACTACGGTTCTTCAAGCAACTGACCACTTCATTGATAAGCAACCCAAGGTTGTGTTGTGGCAGGTGACGGGTGGCACCAGTGGCCCTATTATGGGTTCACATCTGGTTGGCTTGTTGGACAATGCTCGGCGGCAGAAGAAAGATATGAAAGATGATTTCGTTTCGGTGGAGCACCTTGTGTTGGCGTTTCAGGCCGATACGCGGTTTGGGCAGCAATTGTTCAGAAACCTCCAGCTTAGTGATAAGGATTTGAAGGAGGCTGTTAAAGATGTTCGTGGCAACCAGAGAGTCACTGATCAAAATCCTGAAGGAAAATATGAGGCCTTGGATAAGTACGGGAATGATTTGACTGAACTCACTAGGCGTGGCAAACTTGATCCTGTCATAGGCCGAGATGATGAAATACGGCAGTGTATCCAGATATTGTCTAGGAGAACGAAGAATAATCCTGTTATTATTGGTGAGCCTGGTTTGATTTCTTTAGATATGGGATCGTTGGTTGCTGGTGCCAAATTTTGTGGGGATTTTGAGGAAAGATTGAAAGCTGTTCTGAAGGAAGTTACTGCTTCCAATGGGCAGATTTTTTTATTTATTGATGAAATTCATACTGTTGTAGGAGCTGTCGTATTATCTCCTGATGTCCTTGTTAATGATTCTGTTAGGGGCTACAACTGGTGCGATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGGCGATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

392

Amino Acids

42.97

Weight (kDa)

6.63

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25140
fragaria_vesca	FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica	MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica	Prupe.1G392200_v2.0.a1
pyrus_communis	pycom08g04820 pycom15g03540
rosa_chinensis	RchiOBHm_Chr6g0299601
rosa_laevigata	RLG00000011406
rosa_multiflora	Rmu_sc0002895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168520
rosa_rugosa	Rorug06G0290800 Rorug06G0290900
rosa_samantha	Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana	Rw6G035150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	349, 502
Acc36I	ACCTGC	2 cut(s)	349, 502
AccB1I	GGYRCC	3 cut(s)	326, 524, 956
AccB7I	CCANNNNNTGG	1 cut(s)	1161
AccII	CGCG	1 cut(s)	652
AciI	CCGC	5 cut(s)	117, 261, 339, 580, 652
AclWI	GGATC	2 cut(s)	821, 949
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	423, 962, 1050
AcuI	CTGAAG	2 cut(s)	777, 1022
AcyI	GRCGYC	2 cut(s)	53, 336
AdeI	CACNNNGTG	1 cut(s)	628
AfaI	GTAC	1 cut(s)	785
AfeI	AGCGCT	1 cut(s)	390
AfiI	CCNNNNNNNGG	7 cut(s)	49, 541, 542, 631, 651, 836, 1161
AgsI	TTSAA	5 cut(s)	464, 703, 991, 1151, 1172
AjnI	CCWGG	1 cut(s)	916
AjuI	GAANNNNNNNTTGG	4 cut(s)	377, 395, 409, 427
AluBI	AGCT	8 cut(s)	141, 168, 194, 231, 270, 685, 995, 1070
AluI	AGCT	8 cut(s)	141, 168, 194, 231, 270, 685, 995, 1070
Alw21I	GWGCWC	3 cut(s)	272, 378, 624
AlwI	GGATC	2 cut(s)	821, 949
Ama87I	CYCGRG	2 cut(s)	76, 176
Aor51HI	AGCGCT	1 cut(s)	390
AoxI	GGCC	8 cut(s)	39, 198, 279, 414, 532, 642, 771, 838
ApeKI	GCWGC	4 cut(s)	138, 228, 355, 661
ApoI	RAATTY	3 cut(s)	423, 962, 1050
AspLEI	GCGC	2 cut(s)	218, 391
AspS9I	GGNCC	4 cut(s)	40, 129, 415, 533
AsuC2I	CCSGG	2 cut(s)	127, 418
AsuHPI	GGTGA	3 cut(s)	22, 526, 923
AvaI	CYCGRG	2 cut(s)	76, 176
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	3 cut(s)	326, 524, 956
BanII	GRGCYC	2 cut(s)	272, 444
BauI	CACGAG	1 cut(s)	265
Bbv12I	GWGCWC	3 cut(s)	272, 378, 624
BbvI	GCAGC	4 cut(s)	150, 240, 367, 673
BccI	CCATC	3 cut(s)	298, 401, 1124
BceAI	ACGGC	4 cut(s)	95, 131, 314, 872
BciT130I	CCWGG	1 cut(s)	918
BciVI	GTATCC	1 cut(s)	875
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	2 cut(s)	127, 418
BfaI	CTAG	2 cut(s)	810, 879
BfoI	RGCGCY	2 cut(s)	219, 392
BfuAI	ACCTGC	2 cut(s)	349, 502
BfuI	GTATCC	1 cut(s)	875
BisI	GCNGC	7 cut(s)	117, 139, 229, 339, 356, 581, 662
BlsI	GCNGC	7 cut(s)	118, 140, 230, 340, 357, 582, 663
Bme1390I	CCNGG	3 cut(s)	127, 418, 918
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	2 cut(s)	76, 176
BmgT120I	GGNCC	4 cut(s)	40, 129, 415, 533
BmiI	GGNNCC	3 cut(s)	328, 526, 958
BmrFI	CCNGG	3 cut(s)	127, 418, 918
BmsI	GCATC	2 cut(s)	128, 1124
BplI	GAGNNNNNCTC	4 cut(s)	70, 102, 259, 291
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	127, 418
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	2 cut(s)	53, 336
BsaJI	CCNNGG	2 cut(s)	495, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	1059, 1089
Bsc4I	CCNNNNNNNGG	7 cut(s)	49, 541, 542, 631, 651, 836, 1161
Bse1I	ACTGG	2 cut(s)	528, 1127
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	495, 774
BseGI	GGATG	1 cut(s)	1139
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	7 cut(s)	49, 541, 542, 631, 651, 836, 1161
BseMII	CTCAG	3 cut(s)	290, 291, 363
BseNI	ACTGG	2 cut(s)	528, 1127
BseRI	GAGGAG	2 cut(s)	247, 262
BseXI	GCAGC	4 cut(s)	150, 240, 367, 673
BseYI	CCCAGC	3 cut(s)	164, 437, 1137
Bsh1236I	CGCG	1 cut(s)	652
BshFI	GGCC	8 cut(s)	41, 200, 281, 416, 534, 644, 773, 840
BshNI	GGYRCC	3 cut(s)	326, 524, 956
BsiHKAI	GWGCWC	3 cut(s)	272, 378, 624
BsiHKCI	CYCGRG	2 cut(s)	76, 176
BsiSI	CCGG	2 cut(s)	127, 418
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	7 cut(s)	49, 541, 542, 631, 651, 836, 1161
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	8 cut(s)	41, 200, 281, 416, 534, 644, 773, 840
BsoBI	CYCGRG	2 cut(s)	76, 176
Bsp1286I	GDGCHC	4 cut(s)	272, 378, 444, 624
Bsp143I	GATC	3 cut(s)	745, 826, 941
BspACI	CCGC	5 cut(s)	117, 261, 339, 580, 652
BspANI	GGCC	8 cut(s)	41, 200, 281, 416, 534, 644, 773, 840
BspCNI	CTCAG	3 cut(s)	289, 292, 364
BspFNI	CGCG	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	328, 526, 958
BspMI	ACCTGC	2 cut(s)	349, 502
BspPI	GGATC	2 cut(s)	821, 949
BspT107I	GGYRCC	3 cut(s)	326, 524, 956
BsrI	ACTGG	2 cut(s)	528, 1127
BssECI	CCNNGG	2 cut(s)	495, 774
BssMI	GATC	3 cut(s)	745, 826, 941
BssNI	GRCGYC	2 cut(s)	53, 336
BssSI	CACGAG	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	495, 774
Bst2BI	CACGAG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	2 cut(s)	457, 1060
BstACI	GRCGYC	2 cut(s)	53, 336
BstC8I	GCNNGC	3 cut(s)	7, 214, 353
BstDEI	CTNAG	4 cut(s)	276, 300, 372, 686
BstENI	CCTNNNNNAGG	1 cut(s)	834
BstF5I	GGATG	1 cut(s)	1139
BstFNI	CGCG	1 cut(s)	652
BstH2I	RGCGCY	2 cut(s)	219, 392
BstHHI	GCGC	2 cut(s)	218, 391
BstKTI	GATC	3 cut(s)	748, 829, 944
BstMBI	GATC	3 cut(s)	745, 826, 941
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 122, 335, 397, 531, 641, 658, 1134
BstNI	CCWGG	1 cut(s)	918
BstSCI	CCNGG	3 cut(s)	125, 416, 916
BstUI	CGCG	1 cut(s)	652
BstV1I	GCAGC	4 cut(s)	150, 240, 367, 673
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	875
BsuRI	GGCC	8 cut(s)	41, 200, 281, 416, 534, 644, 773, 840
BtgZI	GCGATG	1 cut(s)	1143
BtsCI	GGATG	1 cut(s)	1139
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	4 cut(s)	66, 535, 741, 866
BveI	ACCTGC	2 cut(s)	349, 502
Cac8I	GCNNGC	3 cut(s)	7, 214, 353
CfoI	GCGC	2 cut(s)	218, 391
Cfr13I	GGNCC	4 cut(s)	40, 129, 415, 533
CseI	GACGC	2 cut(s)	42, 344
Csp6I	GTAC	1 cut(s)	784
CspCI	CAANNNNNGTGG	2 cut(s)	949, 984
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	4 cut(s)	276, 300, 372, 686
DpnI	GATC	3 cut(s)	747, 828, 943
DpnII	GATC	3 cut(s)	745, 826, 941
DraIII	CACNNNGTG	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	495, 774
Eco147I	AGGCCT	1 cut(s)	773
Eco24I	GRGCYC	2 cut(s)	272, 444
Eco47I	GGWCC	1 cut(s)	129
Eco47III	AGCGCT	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	777, 1022
Eco88I	CYCGRG	2 cut(s)	76, 176
EcoICRI	GAGCTC	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	495, 774
EcoT38I	GRGCYC	2 cut(s)	272, 444
ErhI	CCWWGG	2 cut(s)	495, 774
FaiI	YATR	6 cut(s)	542, 596, 768, 836, 938, 1056
FaqI	GGGAC	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	7 cut(s)	117, 139, 229, 339, 356, 581, 662
FokI	GGATG	1 cut(s)	1146
FriOI	GRGCYC	2 cut(s)	272, 444
Fsp4HI	GCNGC	7 cut(s)	117, 139, 229, 339, 356, 581, 662
FspBI	CTAG	2 cut(s)	810, 879
GlaI	GCGC	2 cut(s)	217, 390
GluI	GCNGC	7 cut(s)	117, 139, 229, 339, 356, 581, 662
GsaI	CCCAGC	3 cut(s)	168, 441, 1141
GsuI	CTGGAG	1 cut(s)	665
HaeII	RGCGCY	2 cut(s)	219, 392
HaeIII	GGCC	8 cut(s)	41, 200, 281, 416, 534, 644, 773, 840
HapII	CCGG	2 cut(s)	127, 418
HgaI	GACGC	2 cut(s)	42, 344
HhaI	GCGC	2 cut(s)	218, 391
Hin1I	GRCGYC	2 cut(s)	53, 336
Hin6I	GCGC	2 cut(s)	216, 389
HinP1I	GCGC	2 cut(s)	216, 389
HincII	GTYRAC	2 cut(s)	297, 334
HindII	GTYRAC	2 cut(s)	297, 334
HinfI	GANTC	7 cut(s)	71, 81, 97, 244, 368, 738, 1103
HpaI	GTTAAC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	127, 418
HphI	GGTGA	3 cut(s)	22, 526, 923
Hpy166II	GTNNAC	3 cut(s)	297, 334, 548
Hpy188I	TCNGA	4 cut(s)	96, 373, 674, 1002
Hpy188III	TCNNGA	6 cut(s)	78, 176, 430, 755, 868, 1085
Hpy8I	GTNNAC	3 cut(s)	297, 334, 548
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	7 cut(s)	142, 163, 229, 427, 697, 752, 997
HpyCH4III	ACNGT	2 cut(s)	457, 1060
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 122, 335, 397, 531, 641, 658, 1134
HpyF3I	CTNAG	4 cut(s)	276, 300, 372, 686
Hsp92I	GRCGYC	2 cut(s)	53, 336
HspAI	GCGC	2 cut(s)	216, 389
Ksp22I	TGATCA	1 cut(s)	745
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	745, 826, 941
LmnI	GCTCC	4 cut(s)	275, 397, 619, 1067
Lsp1109I	GCAGC	4 cut(s)	150, 240, 367, 673
LweI	GCATC	2 cut(s)	128, 1124
MaeI	CTAG	2 cut(s)	810, 879
MaeIII	GTNAC	3 cut(s)	514, 739, 1009
MalI	GATC	3 cut(s)	747, 828, 943
MboI	GATC	3 cut(s)	745, 826, 941
MboII	GAAGA	3 cut(s)	452, 598, 901
MfeI	CAATTG	1 cut(s)	665
MhlI	GDGCHC	4 cut(s)	272, 378, 444, 624
MluCI	AATT	6 cut(s)	45, 250, 423, 665, 962, 1050
MlyI	GAGTC	4 cut(s)	106, 238, 377, 747
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	9 cut(s)	85, 96, 268, 283, 307, 689, 700, 763, 973
MseI	TTAA	3 cut(s)	296, 714, 1098
MspI	CCGG	2 cut(s)	127, 418
MspR9I	CCNGG	3 cut(s)	127, 418, 918
MunI	CAATTG	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	918
MvnI	CGCG	1 cut(s)	652
MwoI	GCNNNNNNNGC	8 cut(s)	116, 122, 335, 397, 531, 641, 658, 1134
NciI	CCSGG	2 cut(s)	127, 418
NdeII	GATC	3 cut(s)	745, 826, 941
NlaIV	GGNNCC	3 cut(s)	328, 526, 958
NmeAIII	GCCGAG	2 cut(s)	556, 866
NmuCI	GTSAC	2 cut(s)	514, 739
PaeR7I	CTCGAG	1 cut(s)	76
PaqCI	CACCTGC	2 cut(s)	349, 502
PceI	AGGCCT	1 cut(s)	773
PfeI	GAWTC	3 cut(s)	71, 81, 1103
PflMI	CCANNNNNTGG	1 cut(s)	1161
PkrI	GCNGC	7 cut(s)	118, 140, 230, 340, 357, 582, 663
PleI	GAGTC	4 cut(s)	105, 238, 376, 746
PpsI	GAGTC	4 cut(s)	105, 238, 376, 746
Psp124BI	GAGCTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	916
PspFI	CCCAGC	3 cut(s)	164, 437, 1137
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	3 cut(s)	328, 526, 958
PspPI	GGNCC	4 cut(s)	40, 129, 415, 533
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	296, 714, 1098
SatI	GCNGC	7 cut(s)	117, 139, 229, 339, 356, 581, 662
Sau3AI	GATC	3 cut(s)	745, 826, 941
Sau96I	GGNCC	4 cut(s)	40, 129, 415, 533
SchI	GAGTC	4 cut(s)	106, 238, 377, 747
ScrFI	CCNGG	3 cut(s)	127, 418, 918
SduI	GDGCHC	4 cut(s)	272, 378, 444, 624
SfaNI	GCATC	2 cut(s)	128, 1124
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	6 cut(s)	45, 250, 423, 665, 962, 1050
SseBI	AGGCCT	1 cut(s)	773
SsiI	CCGC	5 cut(s)	117, 261, 339, 580, 652
SspMI	CTAG	2 cut(s)	810, 879
SstI	GAGCTC	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	773
StyD4I	CCNGG	3 cut(s)	125, 416, 916
StyI	CCWWGG	2 cut(s)	495, 774
TaaI	ACNGT	2 cut(s)	457, 1060
TaqI	TCGA	2 cut(s)	77, 444
TasI	AATT	6 cut(s)	45, 250, 423, 665, 962, 1050
TauI	GCSGC	3 cut(s)	119, 341, 583
TfiI	GAWTC	3 cut(s)	71, 81, 1103
Tru1I	TTAA	3 cut(s)	296, 714, 1098
Tru9I	TTAA	3 cut(s)	296, 714, 1098
TscAI	CASTG	4 cut(s)	73, 535, 748, 866
TseFI	GTSAC	2 cut(s)	514, 739
TseI	GCWGC	4 cut(s)	138, 228, 355, 661
Tsp45I	GTSAC	2 cut(s)	514, 739
TspDTI	ATGAA	6 cut(s)	398, 469, 611, 864, 1043, 1062
TspRI	CASTG	4 cut(s)	73, 535, 748, 866
Van91I	CCANNNNNTGG	1 cut(s)	1161
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	834
XapI	RAATTY	3 cut(s)	423, 962, 1050
XhoI	CTCGAG	1 cut(s)	76
XspI	CTAG	2 cut(s)	810, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.