Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009882

Physical Location & Seq

Genomic Coordinates Forward (+)

44155701 .. 44162492

Gene Structure 6792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0290800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4281 bp

ATGGAGATCATCAGCTGTGACCTTGAAAAAGCCGGTCACAGTTTCAACAGAAGGGGTTCGTTTTGGACTGACGATGGCAGGGCGGTTTTCTCAGCATCTTCAGTTGGAGAGGACGACGAGGAAGCTCTCAAATGGGCAGCTTTGCAGAGACTTCCTACATTCACTCGTTTGAAAAAAGGTCTGCTCACTACTACTCAAGGCCATGCCAACGAAGTCGATGTGCATCACCTTGAGCTCCAAGAAAAGAAAGACTTGATCGAGAGGCTAGTGGGAGTTGCTGAGGAGGATCATGAGAAATTTTTGTTGAGGCTTAAGAGCCGAATCGATAGAGTTGGAATTAGTCTTCCTACAATTGAAGTTAGGTTCGAGCATTTGAAAATTGCAGCTGAAACTCATGTTGGAGGCAGGGCTCTGCCTTCTGTCTTCAATTATTGTGTTAATGTAGTGGAGGGTTTCTTGAATTGCCTGCACATTCTTCCTGAAAAGAAGGAACATTTGTCTATACTGAAAGATGTGAGTGGGATCATCAAACCTTGCAGGATGACATTGCTTTTGGGTCCTCCAAGTTCGGGGAAGACCACGCTCTTGCTGGCTTTGGCCGGAGAGCTTGATAAGGATCTCAAGGTTTCAGGAAGTGTGACTTACAATGGTCATGGCATGCACGAGTTTGTGCCTCAGAGAAGTGCTGCATATATCAGTCAACATGATGTTCATATTGGAGAAATGACAGTTGCAGAAACCTTGGCCTTTTCCGCAAGATGCCAAGGGGTCGGACCTCGTTATGAGATGCTAGCAGAGCTAAGTAGAAGAGAGAAAGATGCAAGTATTAAGCCAGATCCAGACTTGGATATCTACATGAAGGGAATAGCATCAGAAAGCAAAAGAGCAGCATTTGTGACAAATTATATTCTGAAGGTTTTGGGATTGGAGGGCTGTGCAAATACCTTGGTAGGGGATCAATTGATAAGGGGTATCTCTGGAGGACAAAAGAAGCGAGTCACAACTGGTGAGATGTTAGTTGGTCCTGCTAAGGCACTATTCATGGACGAAATATCGACTGGTTTGGATAGTTCAACAACTTATCAAATAGTGAATTCCATCAAGCAATATGTTCACATTCTCCAAGGGACTGCATTCATCTCACTACTGCAGCCAGCACCCGAGACTTATGATCTATTTGATGACATTATTCTCCTTTCTGATGGTCAAATTGTGTATCAAGGTCCCCGTGAACATGTTCTCGATTTTTTTGAGTCTATGGGCTTCAGATGTCCAGAGAGAAAAGGTGTGGCCGATTTCCTGCAAGAAGTGACATCAAGGAAAGATCAGGAGCAGTATTGGTTTAGCAGAGATGAACCTTACAGGTTCATCACAGTCGAAGAATTTTCCGTGGCATTCCAATCTTTCCACGTAGGGCGCGCAATTACACATGAACTTGCTACTCCATTTGACAAGACCAAGAGCCACTCAGCTGCATTAACAACAAAAAAATATGGTGTTAAAAGAGCAGAACTGCTGAAAGCTTGTTTCTCAAGGGAGTTCTTGCTCATGAAGAGGAATTCATTTGTTTACCTTTTCAAGCTTATCCAACTCTCAATATTGTCTCTGATTACAATGACACTGTTCCTACGAACTGAGATGCACCGCGATTCAGTAATTAATGGAGGAATTTATGCTGGCGCATTATTCTTCTCCTTGGTTGCTGTTATGTTCAATGGAATGGCAGAGCTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGATTGTTTAAGCAATACCTTCTCCTCCTACTCATGAATCAAATGGCTTCTGGATTATTCCGATTCATTGCTGGAGTAGGTAGAAGCTTGACTGTTGCTAATACATTTGGCTCATTTGCACTAGTCATGCTTTTCGCTTTGGGGGGCTTTGTCCTGTCAAGAGAAAATATAAAGAAATGGTGGATATGGGGCTACTGGATATCACCTTTGATGTATGGGCAGAATGCAATTGTAGTTAATGAATTCCTTGGCAAGAGTTGGTCACATGTTCTTCCAAACTCAAACGAATCATTAGGAGTTGAAATTCTGAAATCTCGTGGATTTCGTACACATGCATATTGGTATTGGATTGGCGCAGGAGCATTGGCTGGATACATGCTCTTATTCAACATTTGTTACACTCTGGCTCTCACTTATCTAAACCCTTTGGACAAGCCACAGGGTGTTAAATCAGAAGAATCTCAAGGCAATAAAGATGATGACAAAAGCTTGACTCCTCAAATCAGCAAAGAGAAAGGAGATGGAAGTACTACGCATAACACGAAAAGAGGAATGGTTCTTCCATTTGAACCATATTCCATCACCTTTGATGAAATCTCATACTCGGTGGACATGCCACAGGAAATGAAGAACCAAGGTGTTCCTGAGGATAAATTGGTGCTCCTCAGGCGCGTGAGTGGTGCTTTCAGGCCAGGTGTACTCACAGCTCTTATGGGAGTGAGTGGTGCTGGCAAAACAACTCTAATGGATGTACTAGCTGGTAGAAAAACTGGGGGATATATTGAGGGAAATATCACAATTTCTGGGCACCCCAAGAAGCAAGAATCATTTGCTCGGATTTCTGGATACTGTGAGCAGAATGACATCCACTCTCCACATGTTACTGTTTATGAATCCTTGATGTACTCAGCATGGTTGCGTTTACCTGCAGAAATCAATTCCGAAACAAGGAAGATGTTTGTCGAGGAAGTGATGGCACTTGTGGAGTTGGATCCGTTAAGGCAAGCACTTGTAGGGTTGCCTGGTGCAAATGGTCTCTCAACTGAGCAAAGAAAGAGGCTGACCATTGCAGTTGAACTAGTGGCTAACCCCTCCATAATTTTCATGGATGAACCAACTTCTGGCCTAGATGCAAGAGCTGCTGCAATTGTTATGAGAACAGTTAGGAATACTGTGGACACCGGAAGAACAGTTGTGTGCACCATTCATCAGCCAAGCATTGATATCTTTGAATCTTTTGATGAGTTATTCCTACTGAAGAAAGGGGGACAAGAGCTATACGTTGGGCCATTGGGGCGTCATTCTTGCCATTTAATCAAGTACTTTGAGGGAATTGATAATGTCAGTAAGATTAAGGATGGTTATAATCCGGCTACTTGGATGTTGGAAGTCACCAGTTCTGCGAAAGAAATAGCTTCTGGTGTTGATTTTGCTGATATTTATAAAAATTCAGAGCTATACAGGAGAAACAAAATACTTATTGAAGAACTGAGCACCCCTCCTCCAGATTCCAAGGACCTGTATTTCCCTACTCAATATTCTCAGCCATTTTTAACACAATGCATGGCTTGCTTATGGAAACAACATTGGTCGTATTGGCGCAATCCAGCATATACTGCCATAAAGTTGATATACACAACCATCATAGCCTTGATGTTGGGGACAATGTTCTGGGACCTTGGCTCCAAAACGAAAAAACAACAGGATCTGTTCAATGCAATTGGTTCTATGTATGCTGCTGTTCTGTTTCTTGGTATTAAGAATTCAACTACAGTTCAGCCAGTAGTGTCTGTCGAACGAACAGTCTTTTATAGAGAACGAGCTGCTGGAATGTATTCTCCATTGGCTTATGCATTTGCACAGGTTGCAATTGAGCTCCCATATATTTTTGCCCAAACAATTCTCTATGGTGTCATAGTCTATGCAATGATCGGTTTTGATTGGACTGTGACTAAATTCTTATGGTACCTATTTTTCATGTATTTCACATTTCTGTACTTCACCTTCTATGGTATGATGGGAGTGGCCTTTACACCGAACCAGCACGTTGCTGCTATAAGCTCTAGTGCATTTTATGCAGTATGGAATGTCTTCTCCGGGTTCTTAATCCCACGAACTAGGATTCCTATATGGTGGAGATGGTACTATTGGGCATGTCCAATGGCTTGGAGCTTGTATGGATTGGCTATATCACAGTTTGGAGATCTACAGAACGAGCTTGAGACGGGCGAAACTGTGGAACAATTTATGAGGACTTACTTTGGCTTCAAACATGAATTTCTAGGAGTGGTTGCAGCAGTAGTTGCTGGATTTGCAGTACTCTTTGCATTTGTCTTTGCCTTTTCAATTAAGATGTTGAACTTCCAGAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

1426

Amino Acids

160.86

Weight (kDa)

7.94

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	169 - 350	4.3e-15	ABC transporter
ABC2_membrane_7	PF19055	384 - 464	5.2e-06	ABC-2 type transporter
ABC2_membrane	PF01061	505 - 717	1.3e-50	ABC-2 type transporter
PDR_assoc	PF08370	722 - 783	1e-28	Plant PDR ABC transporter associated
ABC_tran	PF00005	857 - 1009	2.9e-21	ABC transporter
ABC2_membrane	PF01061	1154 - 1368	7.5e-59	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25140
fragaria_vesca	FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica	MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica	Prupe.1G392200_v2.0.a1
pyrus_communis	pycom08g04820 pycom15g03540
rosa_chinensis	RchiOBHm_Chr6g0299601
rosa_laevigata	RLG00000011406
rosa_multiflora	Rmu_sc0002895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168520
rosa_rugosa	Rorug06G0290800 Rorug06G0290900
rosa_samantha	Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana	Rw6G035150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1764, 3270, 3348
Acc36I	ACCTGC	1 cut(s)	2839
Acc65I	GGTACC	1 cut(s)	3870
AccB1I	GGYRCC	2 cut(s)	2712, 3870
AccB7I	CCANNNNNTGG	2 cut(s)	1901, 3026
AccII	CGCG	3 cut(s)	1419, 1647, 2577
AciI	CCGC	3 cut(s)	83, 753, 1645
AcoI	YGGCCR	2 cut(s)	597, 1290
AcuI	CTGAAG	4 cut(s)	84, 932, 1249, 3182
AcyI	GRCGYC	1 cut(s)	3202
AdeI	CACNNNGTG	1 cut(s)	2348
AfiI	CCNNNNNNNGG	5 cut(s)	569, 951, 1901, 2853, 3026
AflII	CTTAAG	1 cut(s)	311
AflIII	ACRYGT	3 cut(s)	1234, 2170, 2782
AhlI	ACTAGT	2 cut(s)	2026, 2983
AjnI	CCWGG	2 cut(s)	2596, 2926
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AloI	GAACNNNNNNTCC	2 cut(s)	4012, 4044
Alw21I	GWGCWC	5 cut(s)	237, 2568, 3107, 3401, 3783
Alw26I	GTCTC	5 cut(s)	142, 1157, 1608, 2945, 4121
Alw44I	GTGCAC	1 cut(s)	3103
AlwNI	CAGNNNCTG	1 cut(s)	3613
Ama87I	CYCGRG	1 cut(s)	1160
AoxI	GGCC	8 cut(s)	199, 597, 744, 1290, 2594, 3028, 3191, 3930
ApaLI	GTGCAC	1 cut(s)	3103
ArsI	GACNNNNNNTTYG	4 cut(s)	535, 567, 3693, 3725
AseI	ATTAAT	1 cut(s)	1659
Asp700I	GAANNNNTTC	4 cut(s)	55, 1236, 3739, 3995
Asp718I	GGTACC	1 cut(s)	3870
AspLEI	GCGC	6 cut(s)	1419, 1421, 1682, 2261, 2577, 3507
AspS9I	GGNCC	7 cut(s)	557, 773, 1022, 1223, 3191, 3421, 3580
AsuC2I	CCSGG	1 cut(s)	4003
AsuHPI	GGTGA	8 cut(s)	218, 1019, 1828, 1861, 2100, 2479, 3289, 3898
AsuNHI	GCTAGC	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	1160
AvaII	GGWCC	6 cut(s)	557, 773, 1022, 1223, 3421, 3580
AxyI	CCTNAGG	2 cut(s)	2550, 2570
BaeGI	GKGCMC	2 cut(s)	2715, 3107
BamHI	GGATCC	1 cut(s)	2896
BanI	GGYRCC	2 cut(s)	2712, 3870
BanII	GRGCYC	3 cut(s)	237, 412, 3783
BarI	GAAGNNNNNNTAC	2 cut(s)	3893, 3925
BauI	CACGAG	2 cut(s)	662, 2220
BbsI	GAAGAC	4 cut(s)	335, 415, 581, 3988
Bbv12I	GWGCWC	5 cut(s)	237, 2568, 3107, 3401, 3783
BbvCI	CCTCAGC	1 cut(s)	279
BcgI	CGANNNNNNTGC	2 cut(s)	1713, 1747
BciT130I	CCWGG	2 cut(s)	2598, 2928
BciVI	GTATCC	2 cut(s)	2270, 2744
BcnI	CCSGG	1 cut(s)	4003
BcoDI	GTCTC	5 cut(s)	142, 1157, 1608, 2945, 4121
BcuI	ACTAGT	2 cut(s)	2026, 2983
BfaI	CTAG	9 cut(s)	266, 791, 2027, 2660, 2984, 3032, 3969, 4023, 4187
BfmI	CTRYAG	5 cut(s)	1148, 1740, 2832, 3675, 4112
BfrI	CTTAAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	2839
BfuI	GTATCC	2 cut(s)	2270, 2744
BglI	GCCNNNNNGGC	1 cut(s)	3199
BglII	AGATCT	1 cut(s)	4108
BmcAI	AGTACT	3 cut(s)	2434, 3227, 4224
Bme1390I	CCNGG	3 cut(s)	2598, 2928, 4003
Bme18I	GGWCC	6 cut(s)	557, 773, 1022, 1223, 3421, 3580
BmeT110I	CYCGRG	1 cut(s)	1160
BmgT120I	GGNCC	7 cut(s)	557, 773, 1022, 1223, 3191, 3421, 3580
BmiI	GGNNCC	8 cut(s)	558, 1225, 1820, 2714, 2898, 3581, 3589, 3872
BmrFI	CCNGG	3 cut(s)	2598, 2928, 4003
BmrI	ACTGGG	1 cut(s)	2685
BmsI	GCATC	8 cut(s)	104, 232, 749, 777, 808, 878, 1629, 3025
BmtI	GCTAGC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	2685
BpiI	GAAGAC	4 cut(s)	335, 415, 581, 3988
BplI	GAGNNNNNCTC	2 cut(s)	3388, 3420
BpmI	CTGGAG	3 cut(s)	999, 1998, 3393
Bpu10I	CCTNAGC	2 cut(s)	279, 1029
BpuEI	CTTGAG	7 cut(s)	180, 251, 605, 1516, 1808, 2352, 4145
BpuMI	CCSGG	1 cut(s)	4003
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	1411
BsaBI	GATNNNNATC	2 cut(s)	222, 615
BsaHI	GRCGYC	1 cut(s)	3202
BsaI	GGTCTC	1 cut(s)	2945
BsaWI	WCCGGW	1 cut(s)	3086
BsaXI	ACNNNNNCTCC	4 cut(s)	3391, 3421, 3572, 3602
Bsc4I	CCNNNNNNNGG	5 cut(s)	569, 951, 1901, 2853, 3026
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	7 cut(s)	1009, 1063, 1754, 2105, 2680, 3300, 3686
Bse21I	CCTNAGG	2 cut(s)	2550, 2570
Bse3DI	GCAATG	4 cut(s)	545, 1971, 2970, 3837
Bse8I	GATNNNNATC	2 cut(s)	222, 615
BseBI	CCWGG	2 cut(s)	2598, 2928
BseCI	ATCGAT	1 cut(s)	324
BseGI	GGATG	6 cut(s)	546, 2659, 2769, 3019, 3268, 3291
BseJI	GATNNNNATC	2 cut(s)	222, 615
BseLI	CCNNNNNNNGG	5 cut(s)	569, 951, 1901, 2853, 3026
BseMI	GCAATG	4 cut(s)	545, 1971, 2970, 3837
BseNI	ACTGG	7 cut(s)	1009, 1063, 1754, 2105, 2680, 3300, 3686
BsePI	GCGCGC	1 cut(s)	1417
BseRI	GAGGAG	6 cut(s)	296, 1811, 1919, 2391, 2558, 3396
BseSI	GKGCMC	2 cut(s)	2715, 3107
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	3 cut(s)	1419, 1647, 2577
BshFI	GGCC	8 cut(s)	201, 599, 746, 1292, 2596, 3030, 3193, 3932
BshNI	GGYRCC	2 cut(s)	2712, 3870
BshVI	ATCGAT	1 cut(s)	324
BsiHKAI	GWGCWC	5 cut(s)	237, 2568, 3107, 3401, 3783
BsiHKCI	CYCGRG	1 cut(s)	1160
BsiSI	CCGG	6 cut(s)	33, 600, 1811, 3087, 3275, 4002
BslFI	GGGAC	5 cut(s)	1141, 1209, 3186, 3580, 3593
BslI	CCNNNNNNNGG	5 cut(s)	569, 951, 1901, 2853, 3026
BsmAI	GTCTC	5 cut(s)	142, 1157, 1608, 2945, 4121
BsmBI	CGTCTC	1 cut(s)	4121
BsmFI	GGGAC	5 cut(s)	1141, 1209, 3186, 3580, 3593
BsmI	GAATGC	3 cut(s)	1133, 1394, 2134
BsnI	GGCC	8 cut(s)	201, 599, 746, 1292, 2596, 3030, 3193, 3932
Bso31I	GGTCTC	1 cut(s)	2945
BsoBI	CYCGRG	1 cut(s)	1160
Bsp1286I	GDGCHC	7 cut(s)	237, 412, 2568, 2715, 3107, 3401, 3783
Bsp19I	CCATGG	1 cut(s)	1793
BspACI	CCGC	3 cut(s)	83, 753, 1645
BspANI	GGCC	8 cut(s)	201, 599, 746, 1292, 2596, 3030, 3193, 3932
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	3 cut(s)	1419, 1647, 2577
BspHI	TCATGA	3 cut(s)	289, 1548, 1938
BspLI	GGNNCC	8 cut(s)	558, 1225, 1820, 2714, 2898, 3581, 3589, 3872
BspMAI	CTGCAG	2 cut(s)	1152, 2836
BspMI	ACCTGC	1 cut(s)	2839
BspOI	GCTAGC	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	1787
BspT107I	GGYRCC	2 cut(s)	2712, 3870
BspTI	CTTAAG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	2945
BsrDI	GCAATG	4 cut(s)	545, 1971, 2970, 3837
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	7 cut(s)	1009, 1063, 1754, 2105, 2680, 3300, 3686
BssAI	RCCGGY	1 cut(s)	32
BssHII	GCGCGC	1 cut(s)	1417
BssNI	GRCGYC	1 cut(s)	3202
BssSI	CACGAG	2 cut(s)	662, 2220
Bst2BI	CACGAG	2 cut(s)	662, 2220
Bst2UI	CCWGG	2 cut(s)	2598, 2928
Bst6I	CTCTTC	3 cut(s)	802, 1547, 1787
BstACI	GRCGYC	1 cut(s)	3202
BstAFI	CTTAAG	1 cut(s)	311
BstAPI	GCANNNNNTGC	6 cut(s)	3044, 3474, 3521, 3770, 3980, 4208
BstBAI	YACGTR	1 cut(s)	1411
BstDSI	CCRYGG	2 cut(s)	1389, 1793
BstF5I	GGATG	6 cut(s)	546, 2659, 2769, 3019, 3268, 3291
BstFNI	CGCG	3 cut(s)	1419, 1647, 2577
BstHHI	GCGC	6 cut(s)	1419, 1421, 1682, 2261, 2577, 3507
BstMAI	GTCTC	5 cut(s)	142, 1157, 1608, 2945, 4121
BstNI	CCWGG	2 cut(s)	2598, 2928
BstNSI	RCATGY	8 cut(s)	661, 1238, 2174, 2240, 2284, 2521, 2786, 4062
BstSCI	CCNGG	3 cut(s)	2596, 2926, 4001
BstSFI	CTRYAG	5 cut(s)	1148, 1740, 2832, 3675, 4112
BstSLI	GKGCMC	2 cut(s)	2715, 3107
BstUI	CGCG	3 cut(s)	1419, 1647, 2577
BstV2I	GAAGAC	4 cut(s)	335, 415, 581, 3988
BstX2I	RGATCY	6 cut(s)	616, 835, 1827, 2896, 3610, 4108
BstXI	CCANNNNNNTGG	1 cut(s)	4071
BstYI	RGATCY	6 cut(s)	616, 835, 1827, 2896, 3610, 4108
Bsu15I	ATCGAT	1 cut(s)	324
Bsu36I	CCTNAGG	2 cut(s)	2550, 2570
BsuI	GTATCC	2 cut(s)	2270, 2744
BsuRI	GGCC	8 cut(s)	201, 599, 746, 1292, 2596, 3030, 3193, 3932
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	2 cut(s)	1389, 1793
BtsCI	GGATG	6 cut(s)	546, 2659, 2769, 3019, 3268, 3291
BtsIMutI	CAGTG	2 cut(s)	1619, 1761
BveI	ACCTGC	1 cut(s)	2839
CaiI	CAGNNNCTG	1 cut(s)	3613
CciI	TCATGA	3 cut(s)	289, 1548, 1938
CfoI	GCGC	6 cut(s)	1419, 1421, 1682, 2261, 2577, 3507
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	7 cut(s)	557, 773, 1022, 1223, 3191, 3421, 3580
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	1 cut(s)	3191
DraIII	CACNNNGTG	1 cut(s)	2348
EaeI	YGGCCR	2 cut(s)	597, 1290
Eam1104I	CTCTTC	3 cut(s)	802, 1547, 1787
EarI	CTCTTC	3 cut(s)	802, 1547, 1787
Ecl136II	GAGCTC	2 cut(s)	235, 3781
Eco24I	GRGCYC	3 cut(s)	237, 412, 3783
Eco31I	GGTCTC	1 cut(s)	2945
Eco32I	GATATC	3 cut(s)	850, 2106, 3130
Eco47I	GGWCC	6 cut(s)	557, 773, 1022, 1223, 3421, 3580
Eco53kI	GAGCTC	2 cut(s)	235, 3781
Eco57I	CTGAAG	4 cut(s)	84, 932, 1249, 3182
Eco81I	CCTNAGG	2 cut(s)	2550, 2570
Eco88I	CYCGRG	1 cut(s)	1160
EcoICRI	GAGCTC	2 cut(s)	235, 3781
EcoO109I	RGGNCCY	4 cut(s)	557, 1223, 3421, 3580
EcoRI	GAATTC	4 cut(s)	1093, 1558, 2147, 3667
EcoRII	CCWGG	2 cut(s)	2596, 2926
EcoRV	GATATC	3 cut(s)	850, 2106, 3130
EcoT22I	ATGCAT	3 cut(s)	2242, 3470, 3760
EcoT38I	GRGCYC	3 cut(s)	237, 412, 3783
Esp3I	CGTCTC	1 cut(s)	4121
FalI	AAGNNNNNCTT	6 cut(s)	236, 268, 625, 657, 1766, 1798
FaqI	GGGAC	5 cut(s)	1141, 1209, 3186, 3580, 3593
FauNDI	CATATG	1 cut(s)	1801
FokI	GGATG	6 cut(s)	553, 2666, 2756, 3026, 3275, 3298
FriOI	GRGCYC	3 cut(s)	237, 412, 3783
FspBI	CTAG	9 cut(s)	266, 791, 2027, 2660, 2984, 3032, 3969, 4023, 4187
GlaI	GCGC	6 cut(s)	1418, 1420, 1681, 2260, 2576, 3506
GsuI	CTGGAG	3 cut(s)	999, 1998, 3393
HaeIII	GGCC	8 cut(s)	201, 599, 746, 1292, 2596, 3030, 3193, 3932
HapII	CCGG	6 cut(s)	33, 600, 1811, 3087, 3275, 4002
HgaI	GACGC	1 cut(s)	3191
HhaI	GCGC	6 cut(s)	1419, 1421, 1682, 2261, 2577, 3507
Hin1I	GRCGYC	1 cut(s)	3202
Hin6I	GCGC	6 cut(s)	1417, 1419, 1680, 2259, 2575, 3505
HinP1I	GCGC	6 cut(s)	1417, 1419, 1680, 2259, 2575, 3505
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HindIII	AAGCTT	5 cut(s)	1521, 1580, 1748, 1990, 2392
HpaII	CCGG	6 cut(s)	33, 600, 1811, 3087, 3275, 4002
HphI	GGTGA	8 cut(s)	218, 1019, 1828, 1861, 2100, 2479, 3289, 3898
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	7 cut(s)	45, 426, 481, 853, 907, 1934, 3919
HpyCH4IV	ACGT	3 cut(s)	1410, 3186, 3951
HpySE526I	ACGT	3 cut(s)	1410, 3186, 3951
Hsp92I	GRCGYC	1 cut(s)	3202
HspAI	GCGC	6 cut(s)	1417, 1419, 1680, 2259, 2575, 3505
KpnI	GGTACC	1 cut(s)	3874
LguI	GCTCTTC	1 cut(s)	1787
LmnI	GCTCC	8 cut(s)	240, 1330, 1824, 2264, 2571, 3593, 3786, 4074
LweI	GCATC	8 cut(s)	104, 232, 749, 777, 808, 878, 1629, 3025
MaeI	CTAG	9 cut(s)	266, 791, 2027, 2660, 2984, 3032, 3969, 4023, 4187
MaeII	ACGT	3 cut(s)	1410, 3186, 3951
MfeI	CAATTG	6 cut(s)	351, 959, 2133, 3051, 3624, 3774
MflI	RGATCY	6 cut(s)	616, 835, 1827, 2896, 3610, 4108
MhlI	GDGCHC	7 cut(s)	237, 412, 2568, 2715, 3107, 3401, 3783
MlyI	GAGTC	3 cut(s)	1005, 1262, 2392
MmeI	TCCRAC	8 cut(s)	85, 313, 379, 751, 1612, 1882, 2874, 3270
Mph1103I	ATGCAT	3 cut(s)	2242, 3470, 3760
MroXI	GAANNNNTTC	4 cut(s)	55, 1236, 3739, 3995
MspA1I	CMGCKG	3 cut(s)	15, 386, 1472
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	6 cut(s)	33, 600, 1811, 3087, 3275, 4002
MspR9I	CCNGG	3 cut(s)	2598, 2928, 4003
MunI	CAATTG	6 cut(s)	351, 959, 2133, 3051, 3624, 3774
Mva1269I	GAATGC	3 cut(s)	1133, 1394, 2134
MvaI	CCWGG	2 cut(s)	2598, 2928
MvnI	CGCG	3 cut(s)	1419, 1647, 2577
NciI	CCSGG	1 cut(s)	4003
NcoI	CCATGG	1 cut(s)	1793
NdeI	CATATG	1 cut(s)	1801
NheI	GCTAGC	1 cut(s)	790
NlaIV	GGNNCC	8 cut(s)	558, 1225, 1820, 2714, 2898, 3581, 3589, 3872
NmuCI	GTSAC	9 cut(s)	17, 35, 637, 895, 997, 1309, 2166, 3295, 3853
NsiI	ATGCAT	3 cut(s)	2242, 3470, 3760
NspI	RCATGY	8 cut(s)	661, 1238, 2174, 2240, 2284, 2521, 2786, 4062
PaeI	GCATGC	1 cut(s)	661
PagI	TCATGA	3 cut(s)	289, 1548, 1938
PauI	GCGCGC	1 cut(s)	1417
PciI	ACATGT	3 cut(s)	1234, 2170, 2782
PciSI	GCTCTTC	1 cut(s)	1787
PcsI	WCGNNNNNNNCGW	2 cut(s)	2227, 2444
PctI	GAATGC	3 cut(s)	1133, 1394, 2134
PdmI	GAANNNNTTC	4 cut(s)	55, 1236, 3739, 3995
PflMI	CCANNNNNTGG	2 cut(s)	1901, 3026
PleI	GAGTC	3 cut(s)	1004, 1261, 2392
PpsI	GAGTC	3 cut(s)	1004, 1261, 2392
Ppu21I	YACGTR	1 cut(s)	1411
PpuMI	RGGWCCY	4 cut(s)	557, 1223, 3421, 3580
PscI	ACATGT	3 cut(s)	1234, 2170, 2782
PshBI	ATTAAT	1 cut(s)	1659
PsiI	TTATAA	3 cut(s)	1764, 3270, 3348
Psp124BI	GAGCTC	2 cut(s)	237, 3783
Psp5II	RGGWCCY	4 cut(s)	557, 1223, 3421, 3580
Psp6I	CCWGG	2 cut(s)	2596, 2926
PspGI	CCWGG	2 cut(s)	2596, 2926
PspN4I	GGNNCC	8 cut(s)	558, 1225, 1820, 2714, 2898, 3581, 3589, 3872
PspPI	GGNCC	7 cut(s)	557, 773, 1022, 1223, 3191, 3421, 3580
PspPPI	RGGWCCY	4 cut(s)	557, 1223, 3421, 3580
PstI	CTGCAG	2 cut(s)	1152, 2836
PstNI	CAGNNNCTG	1 cut(s)	3613
PsuI	RGATCY	6 cut(s)	616, 835, 1827, 2896, 3610, 4108
PteI	GCGCGC	1 cut(s)	1417
PvuII	CAGCTG	3 cut(s)	15, 386, 1472
SacI	GAGCTC	2 cut(s)	237, 3783
SapI	GCTCTTC	1 cut(s)	1787
Sau96I	GGNCC	7 cut(s)	557, 773, 1022, 1223, 3191, 3421, 3580
ScaI	AGTACT	3 cut(s)	2434, 3227, 4224
SchI	GAGTC	3 cut(s)	1005, 1262, 2392
ScrFI	CCNGG	3 cut(s)	2598, 2928, 4003
SduI	GDGCHC	7 cut(s)	237, 412, 2568, 2715, 3107, 3401, 3783
SfaNI	GCATC	8 cut(s)	104, 232, 749, 777, 808, 878, 1629, 3025
SfcI	CTRYAG	5 cut(s)	1148, 1740, 2832, 3675, 4112
SinI	GGWCC	6 cut(s)	557, 773, 1022, 1223, 3421, 3580
SmlI	CTYRAG	8 cut(s)	195, 230, 311, 620, 1531, 1823, 2367, 4124
SmoI	CTYRAG	8 cut(s)	195, 230, 311, 620, 1531, 1823, 2367, 4124
SpeI	ACTAGT	2 cut(s)	2026, 2983
SphI	GCATGC	1 cut(s)	661
SsiI	CCGC	3 cut(s)	83, 753, 1645
SspI	AATATT	2 cut(s)	1599, 3443
SspMI	CTAG	9 cut(s)	266, 791, 2027, 2660, 2984, 3032, 3969, 4023, 4187
SstI	GAGCTC	2 cut(s)	237, 3783
StyD4I	CCNGG	3 cut(s)	2596, 2926, 4001
TaiI	ACGT	3 cut(s)	1413, 3189, 3954
TatI	WGTACW	7 cut(s)	2432, 2602, 2656, 2808, 3225, 3900, 4222
TscAI	CASTG	2 cut(s)	1626, 1761
TseFI	GTSAC	9 cut(s)	17, 35, 637, 895, 997, 1309, 2166, 3295, 3853
Tsp45I	GTSAC	9 cut(s)	17, 35, 637, 895, 997, 1309, 2166, 3295, 3853
TspGWI	ACGGA	2 cut(s)	1378, 2889
TspRI	CASTG	2 cut(s)	1626, 1761
Van91I	CCANNNNNTGG	2 cut(s)	1901, 3026
Vha464I	CTTAAG	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	3103
VpaK11BI	GGWCC	6 cut(s)	557, 773, 1022, 1223, 3421, 3580
VspI	ATTAAT	1 cut(s)	1659
XceI	RCATGY	8 cut(s)	661, 1238, 2174, 2240, 2284, 2521, 2786, 4062
XcmI	CCANNNNNNNNNTGG	2 cut(s)	586, 3007
XmnI	GAANNNNTTC	4 cut(s)	55, 1236, 3739, 3995
XspI	CTAG	9 cut(s)	266, 791, 2027, 2660, 2984, 3032, 3969, 4023, 4187
ZrmI	AGTACT	3 cut(s)	2434, 3227, 4224
Zsp2I	ATGCAT	3 cut(s)	2242, 3470, 3760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.