Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009882

Physical Location & Seq

Genomic Coordinates Forward (+)

9360719 .. 9364890

Gene Structure 4172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGGTTTTGGCGGCCATGAACGGCGCCTCCAAAACCTCAAGAAGTTCCCTCTCTCGGTGTCGTGAAACTGCAGTGGCTGCCTCCAAGTTTTCCATGGGCGGCTCCGTGGCTCCCTTCAATGTCGTTTGGGATCGAAATCATGTCGTTTCGGCCAAGTACGTGGCAAACACTCTCAGTCGGAGCTTTCACTCTTCGGGTCCTCGTTTCAGCTCCGCCAGCAGCGCTGCTCAGGCTCAGCAGAATGAGTTCACTGAGATGGCATGGGAGGGCATAATTGGGGCTGTGGAAGCCGCCAGAAATAGCAAGCAACAAGTGGTGGAATCTGAGCACTTGATGAAAGCTATCTTGGAGCAGAAGGATGGTTTGGCCAGGAGAATCTTCACCAAGGCTGGTGTAGACAACACCACTGTTCTCCAGGCCACCGATGACTTCATTGCTCAGCAACCCAAGGTGATGGGTGCGACCAGTGGACCCATAATAGGCACACATCTCGGCGCTCTGTTGGACAATGCCCGAAGGCAGAAGAAAGAAATGAATGATGATTTTGTGTCTGTGGAGCACCTTGTGTTGGCGTTTCAGTCCGACACACGGTTTGGGCAGCAATTGTTCAAAAACCTCCAGCTTAGTGACAAGGATTTGAAGGAGGCTGTTAAACATGTTCGTGGAAATCAGAGAGTCACTGATCAAAATCCTGAAGGGAAATATGAGGCTTTGACTAAATATGGGAATGACTTGACTGAGCTCGCCAGTCGTGGCAAACTTGATCCAGTTATTGGACGGGATGATGAAATACGGCGTTGTATCCAAATACTGTCCAGGAGAACAAAAAATAATCCCGTTATTATTGGAGAGCCTGGTGTCGGAAAAACTGCAATCGCTGAAGGATTAGCTCAACGGATTGTGCGTGGGGATGTTCCGGAACCCCTATTGAACAGAAAGTTGATTTCTTTAGATATGGGTTCATTGGTCGCTGGAGCCAAGTTTCGTGGTGACTTTGAGGAAAGATTGAAAGCTGTATTGAAGGAAGTTACTGCTTCAAATGGACAGATCATATTATTCATTGATGAGATTCATACTGTCGTAGGAGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGGCGGGGTGAACTACGGTGTATAGGAGCAACCACGTTGAATGAGTACAGAAAATACATTGAGAAGGATCCTGCACTGGAGCGTAGGTTTCAGCAGGTTTTTTGTGGTCAGCCATCTGTCGAAGACACGATATCCATTCTTCGTGGGTTGCGTGAGCGGTACGAGCTGCATCATGGTGTGAAAATATCAGATAGTGCCCTTGTTTCTGCAGCAGTTCTTTCTGACAGATACATTACAGAACGATTTTTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAAATGGAGATCACATCCAAGCCAACTGAGTTAGATGAGGTAGACAGAGCTGTACTGAAGTTGGAGATGGAGAAGCTATCTTTGCAAAATGACACAGATAAATCATCGAAAGAAAGGTTAAGCAAGCTGGAGAGTGACCTCGCATTGCTCAAACAGAAACAAAAAGAATTTAATGAACAGTGGGATCGTGAGAAGGCTCTCATGACTCGAATACGATCAATTAAAGAAGAGATTGATAGAGTAAACCAAGAGATGGAAGCTGCTGAACGTGCATATGACCTAAGTCGTGCTGCTGAGCTCAAATATGGAACTCTAATGTCCCTGCAACGCCACAAATGGACTGGTATACCCTTGTCAAACCTTCAACAGTCGGAAAGAGACAAGCTAGTCATGCTAGAAAAGGTACTTCATAAGAGGGTAGTGGGTCAAGATATAGCCGTGAAATCGGTAGCTGATGCAATCAGACGTTCAAGGGCTGGTCTATCAGACCCAAACCGACCTATTGCAAGTTTCATGTTTTTGGGACCTACTGGTGTGGGGAAAACAGAGCTTGCAAAGGCCTTGGCCAGCTATCTCTTCAACACAGAAAATGCTCTGGTTAGGATTGATATGAGTGAGTACATGGAAAAGCATGCAGTTTCACGTTTGGTGGGTGCTCCGCCTGGTTATGTTGGTTATGAAGAAGGTGGACAACTAACAGAAGTGGTTCGTCGAAGACCCTATTGTGTAGTGCTATTCGATGAAATAGAGAAAGCACATCAGGATGTGTTCAATATTTTGTTACAATTGCTGGATGATGGAAGGATAACCGACTCACAAGGAAGGACTGTAAGCTTCACTAATTGTGTTGTGATAATGACCTCAAATCTTGGCTCCCACTATATACTTGAAACTCTTCGTAATACTCAAGACAGCAAGGATGCAGTTTATGAGTTGATGAAAAGACAAGTGGTTGAATTGGCGAGACAGACTTTCCGCCCTGAGTTTTTGAATCGAGTTGATGAGTTTATCGTGTTCCAGCCTTTGGACTCCAAAGAGATCTGTAACATTGTTGAGATACAGATGAACCGGGTTAAAGATAGGCTGAAGCAAAAGAAAATCGAGCTTCATTATACAAAGGAAGCTGTGGAGCTTCTTGGTAAATTGGGCTTTGATCCGAACTTTGGAGCGAGGCCAGTAAAGAGGGTGATACAGCAGCTGGTTGAGAATGAAATTGCAATGGGACTGTTGAGAGGCGATTTCAGTGAGGAGGATGCGATCATTGTTGATGCTGAGGTGTCCCCATCCGCTAAAGATATTCCTCCACAGAAGAGGTTGCGCATCAGGAAATTGGAGAATGCTTCTTCTAGTGTAGATGACATGGTTGCGAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

936

Amino Acids

104.61

Weight (kDa)

7.61

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	82 - 205	4.5e-29	Clp repeat (R) N-terminal domain
NBD_SMAX1	PF23569	262 - 362	1.2e-06	SMAX1 nucleotide binding domain
AAA	PF00004	281 - 412	7.6e-13	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	419 - 521	5.5e-35	AAA lid domain
AAA_2	PF07724	644 - 813	6.3e-69	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	649 - 770	3.3e-12	AAA domain (dynein-related subfamily)
AAA	PF00004	650 - 772	2.9e-10	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	820 - 900	2.8e-23	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25140
fragaria_vesca	FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970
malus_domestica	MD08G1058100.v1.1 MD15G1038200.v1.1
prunus_persica	Prupe.1G392200_v2.0.a1
pyrus_communis	pycom08g04820 pycom15g03540
rosa_chinensis	RchiOBHm_Chr6g0299601
rosa_laevigata	RLG00000011406
rosa_multiflora	Rmu_sc0002895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168520
rosa_rugosa	Rorug06G0290800 Rorug06G0290900
rosa_samantha	Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900
rosa_wichuraiana	Rw6G035150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1820
Acc16I	TGCGCA	1 cut(s)	2753
Acc36I	ACCTGC	1 cut(s)	1225
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	4 cut(s)	773, 1139, 1687, 2458
AccBSI	CCGCTC	1 cut(s)	1297
AccI	GTMKAC	3 cut(s)	396, 1476, 1780
AccIII	TCCGGA	1 cut(s)	916
AciI	CCGC	9 cut(s)	11, 99, 213, 291, 1144, 1297, 2093, 2410, 2721
AclWI	GGATC	6 cut(s)	138, 758, 1202, 1215, 1626, 2582
AcoI	YGGCCR	4 cut(s)	12, 150, 366, 1998
AcsI	RAATTY	1 cut(s)	1601
AcuI	CTGAAG	4 cut(s)	714, 900, 1511, 2540
AcyI	GRCGYC	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	565
AfaI	GTAC	6 cut(s)	158, 1187, 1301, 1488, 1839, 2054
AfeI	AGCGCT	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	655
AjnI	CCWGG	5 cut(s)	368, 414, 815, 853, 2095
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 347, 361, 379
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
Alw21I	GWGCWC	5 cut(s)	330, 561, 744, 1734, 2092
Alw26I	GTCTC	2 cut(s)	1806, 2392
AlwI	GGATC	6 cut(s)	138, 758, 1202, 1215, 1626, 2582
AlwNI	CAGNNNCTG	2 cut(s)	77, 2632
Aor13HI	TCCGGA	1 cut(s)	916
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	7 cut(s)	12, 150, 366, 417, 1992, 1998, 2606
ApoI	RAATTY	1 cut(s)	1601
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
Asp700I	GAANNNNTTC	3 cut(s)	245, 2139, 2328
AspLEI	GCGC	4 cut(s)	26, 224, 497, 2754
AspS9I	GGNCC	3 cut(s)	197, 470, 1958
AsuC2I	CCSGG	1 cut(s)	2504
AsuHPI	GGTGA	5 cut(s)	373, 463, 1001, 1160, 2632
AvaII	GGWCC	3 cut(s)	197, 470, 1958
BaeGI	GKGCMC	1 cut(s)	1339
BalI	TGGCCA	2 cut(s)	368, 2000
BamHI	GGATCC	1 cut(s)	1207
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	744, 1734
BbsI	GAAGAC	2 cut(s)	1269, 2155
Bbv12I	GWGCWC	5 cut(s)	330, 561, 744, 1734, 2092
BbvCI	CCTCAGC	1 cut(s)	2706
BccI	CCATC	8 cut(s)	250, 353, 448, 1261, 1495, 1681, 2225, 2725
BceAI	ACGGC	3 cut(s)	37, 809, 1856
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	5 cut(s)	370, 416, 817, 855, 2097
BciVI	GTATCC	1 cut(s)	812
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	2504
BcoDI	GTCTC	2 cut(s)	1806, 2392
BfaI	CTAG	3 cut(s)	1820, 1829, 2781
BfmI	CTRYAG	2 cut(s)	69, 1347
BfoI	RGCGCY	3 cut(s)	27, 225, 498
BfuAI	ACCTGC	1 cut(s)	1225
BfuI	GTATCC	1 cut(s)	812
BglII	AGATCT	1 cut(s)	2472
BlpI	GCTNAGC	3 cut(s)	234, 438, 1728
Bme1390I	CCNGG	6 cut(s)	370, 416, 817, 855, 2097, 2504
Bme18I	GGWCC	3 cut(s)	197, 470, 1958
BmgT120I	GGNCC	3 cut(s)	197, 470, 1958
BmrFI	CCNGG	6 cut(s)	370, 416, 817, 855, 2097, 2504
BmsI	GCATC	7 cut(s)	1102, 1318, 1879, 2344, 2677, 2692, 2763
BoxI	GACNNNNGTC	1 cut(s)	1716
BpiI	GAAGAC	2 cut(s)	1269, 2155
BpmI	CTGGAG	5 cut(s)	398, 602, 993, 1238, 1583
Bpu10I	CCTNAGC	2 cut(s)	228, 2706
Bpu1102I	GCTNAGC	3 cut(s)	234, 438, 1728
BpuEI	CTTGAG	2 cut(s)	22, 2325
BpuMI	CCSGG	1 cut(s)	2504
BsaAI	YACGTR	1 cut(s)	160
BsaBI	GATNNNNATC	2 cut(s)	135, 687
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	5 cut(s)	93, 105, 384, 447, 1995
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 1211, 1241
Bse1I	ACTGG	7 cut(s)	465, 747, 767, 1221, 1780, 1969, 2609
Bse3DI	GCAATG	4 cut(s)	432, 1113, 1577, 2658
Bse8I	GATNNNNATC	2 cut(s)	135, 687
BseAI	TCCGGA	1 cut(s)	916
BseBI	CCWGG	5 cut(s)	370, 416, 817, 855, 2097
BseDI	CCNNGG	5 cut(s)	93, 105, 384, 447, 1995
BseJI	GATNNNNATC	2 cut(s)	135, 687
BseMI	GCAATG	4 cut(s)	432, 1113, 1577, 2658
BseNI	ACTGG	7 cut(s)	465, 747, 767, 1221, 1780, 1969, 2609
BseRI	GAGGAG	1 cut(s)	2696
BseSI	GKGCMC	1 cut(s)	1339
BseYI	CCCAGC	1 cut(s)	1115
BsgI	GTGCAG	1 cut(s)	1197
BshFI	GGCC	7 cut(s)	14, 152, 368, 419, 1994, 2000, 2608
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	5 cut(s)	330, 561, 744, 1734, 2092
BsiSI	CCGG	2 cut(s)	917, 2503
BslFI	GGGAC	4 cut(s)	1738, 1971, 2670, 2698
BsmAI	GTCTC	2 cut(s)	1806, 2392
BsmFI	GGGAC	4 cut(s)	1738, 1971, 2670, 2698
BsmI	GAATGC	1 cut(s)	2776
BsnI	GGCC	7 cut(s)	14, 152, 368, 419, 1994, 2000, 2608
Bsp1286I	GDGCHC	6 cut(s)	330, 561, 744, 1339, 1734, 2092
Bsp13I	TCCGGA	1 cut(s)	916
Bsp1720I	GCTNAGC	3 cut(s)	234, 438, 1728
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	9 cut(s)	11, 99, 213, 291, 1144, 1297, 2093, 2410, 2721
BspANI	GGCC	7 cut(s)	14, 152, 368, 419, 1994, 2000, 2608
BspEI	TCCGGA	1 cut(s)	916
BspHI	TCATGA	1 cut(s)	1635
BspMAI	CTGCAG	2 cut(s)	73, 1351
BspMI	ACCTGC	1 cut(s)	1225
BspPI	GGATC	6 cut(s)	138, 758, 1202, 1215, 1626, 2582
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	1297
BsrDI	GCAATG	4 cut(s)	432, 1113, 1577, 2658
BsrI	ACTGG	7 cut(s)	465, 747, 767, 1221, 1780, 1969, 2609
BssECI	CCNNGG	5 cut(s)	93, 105, 384, 447, 1995
BssNAI	GTATAC	1 cut(s)	1781
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	4 cut(s)	93, 384, 447, 1995
Bst1107I	GTATAC	1 cut(s)	1781
Bst2UI	CCWGG	5 cut(s)	370, 416, 817, 855, 2097
Bst4CI	ACNGT	9 cut(s)	409, 591, 813, 1078, 1158, 1614, 1803, 2263, 2661
Bst6I	CTCTTC	5 cut(s)	196, 1656, 2015, 2334, 2738
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	2 cut(s)	77, 1112
BstBAI	YACGTR	1 cut(s)	160
BstC8I	GCNNGC	7 cut(s)	217, 305, 744, 1559, 1986, 2002, 2067
BstDSI	CCRYGG	2 cut(s)	93, 105
BstH2I	RGCGCY	3 cut(s)	27, 225, 498
BstHHI	GCGC	4 cut(s)	26, 224, 497, 2754
BstMAI	GTCTC	2 cut(s)	1806, 2392
BstNI	CCWGG	5 cut(s)	370, 416, 817, 855, 2097
BstNSI	RCATGY	2 cut(s)	659, 2069
BstPAI	GACNNNNGTC	1 cut(s)	1716
BstSCI	CCNGG	6 cut(s)	368, 414, 815, 853, 2095, 2502
BstSFI	CTRYAG	2 cut(s)	69, 1347
BstSLI	GKGCMC	1 cut(s)	1339
BstV2I	GAAGAC	2 cut(s)	1269, 2155
BstX2I	RGATCY	2 cut(s)	1207, 2472
BstXI	CCANNNNNNTGG	2 cut(s)	160, 454
BstYI	RGATCY	2 cut(s)	1207, 2472
BstZ17I	GTATAC	1 cut(s)	1781
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	7 cut(s)	14, 152, 368, 419, 1994, 2000, 2608
BtgI	CCRYGG	2 cut(s)	93, 105
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	8 cut(s)	78, 249, 405, 472, 678, 1214, 1619, 2683
BveI	ACCTGC	1 cut(s)	1225
Cac8I	GCNNGC	7 cut(s)	217, 305, 744, 1559, 1986, 2002, 2067
CaiI	CAGNNNCTG	2 cut(s)	77, 2632
CciI	TCATGA	1 cut(s)	1635
CfoI	GCGC	4 cut(s)	26, 224, 497, 2754
Cfr13I	GGNCC	3 cut(s)	197, 470, 1958
Csp6I	GTAC	6 cut(s)	157, 1186, 1300, 1487, 1838, 2053
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviQI	GTAC	6 cut(s)	157, 1186, 1300, 1487, 1838, 2053
DinI	GGCGCC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	565
DrdI	GACNNNNNNGTC	1 cut(s)	1820
DseDI	GACNNNNNNGTC	1 cut(s)	1820
EaeI	YGGCCR	4 cut(s)	12, 150, 366, 1998
Eam1104I	CTCTTC	5 cut(s)	196, 1656, 2015, 2334, 2738
EarI	CTCTTC	5 cut(s)	196, 1656, 2015, 2334, 2738
EciI	GGCGGA	3 cut(s)	202, 2082, 2399
Ecl136II	GAGCTC	2 cut(s)	742, 1732
Eco130I	CCWWGG	4 cut(s)	93, 384, 447, 1995
Eco147I	AGGCCT	1 cut(s)	1994
Eco24I	GRGCYC	2 cut(s)	744, 1734
Eco32I	GATATC	1 cut(s)	1272
Eco47I	GGWCC	3 cut(s)	197, 470, 1958
Eco47III	AGCGCT	1 cut(s)	223
Eco53kI	GAGCTC	2 cut(s)	742, 1732
Eco57I	CTGAAG	4 cut(s)	714, 900, 1511, 2540
EcoICRI	GAGCTC	2 cut(s)	742, 1732
EcoO109I	RGGNCCY	2 cut(s)	197, 1958
EcoRII	CCWGG	5 cut(s)	368, 414, 815, 853, 2095
EcoRV	GATATC	1 cut(s)	1272
EcoT14I	CCWWGG	4 cut(s)	93, 384, 447, 1995
EcoT38I	GRGCYC	2 cut(s)	744, 1734
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	4 cut(s)	93, 384, 447, 1995
FaqI	GGGAC	4 cut(s)	1738, 1971, 2670, 2698
FauI	CCCGC	1 cut(s)	1137
FauNDI	CATATG	1 cut(s)	1708
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	3 cut(s)	396, 1476, 1780
FriOI	GRGCYC	2 cut(s)	744, 1734
FspBI	CTAG	3 cut(s)	1820, 1829, 2781
FspI	TGCGCA	1 cut(s)	2753
GlaI	GCGC	4 cut(s)	25, 223, 496, 2753
GsaI	CCCAGC	1 cut(s)	1119
GsuI	CTGGAG	5 cut(s)	398, 602, 993, 1238, 1583
HaeII	RGCGCY	3 cut(s)	27, 225, 498
HaeIII	GGCC	7 cut(s)	14, 152, 368, 419, 1994, 2000, 2608
HapII	CCGG	2 cut(s)	917, 2503
HhaI	GCGC	4 cut(s)	26, 224, 497, 2754
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	4 cut(s)	24, 222, 495, 2752
HinP1I	GCGC	4 cut(s)	24, 222, 495, 2752
HindIII	AAGCTT	1 cut(s)	2266
HinfI	GANTC	8 cut(s)	320, 375, 675, 1069, 1639, 2246, 2425, 2462
HpaII	CCGG	2 cut(s)	917, 2503
HphI	GGTGA	5 cut(s)	373, 463, 1001, 1160, 2632
Hpy166II	GTNNAC	8 cut(s)	249, 397, 470, 1151, 1477, 1678, 1781, 2123
Hpy8I	GTNNAC	8 cut(s)	249, 397, 470, 1151, 1477, 1678, 1781, 2123
Hpy99I	CGWCG	1 cut(s)	2148
HpyCH4III	ACNGT	9 cut(s)	409, 591, 813, 1078, 1158, 1614, 1803, 2263, 2661
HpyCH4IV	ACGT	5 cut(s)	159, 1175, 1702, 1900, 2077
HpySE526I	ACGT	5 cut(s)	159, 1175, 1702, 1900, 2077
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	4 cut(s)	24, 222, 495, 2752
KasI	GGCGCC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	916
Ksp22I	TGATCA	1 cut(s)	682
LweI	GCATC	7 cut(s)	1102, 1318, 1879, 2344, 2677, 2692, 2763
MaeI	CTAG	3 cut(s)	1820, 1829, 2781
MaeII	ACGT	5 cut(s)	159, 1175, 1702, 1900, 2077
MaeIII	GTNAC	7 cut(s)	626, 676, 989, 1027, 1568, 2214, 2477
MbiI	CCGCTC	1 cut(s)	1297
MfeI	CAATTG	2 cut(s)	602, 2219
MflI	RGATCY	2 cut(s)	1207, 2472
MhlI	GDGCHC	6 cut(s)	330, 561, 744, 1339, 1734, 2092
MlsI	TGGCCA	2 cut(s)	368, 2000
MluNI	TGGCCA	2 cut(s)	368, 2000
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	4 cut(s)	684, 1633, 2240, 2456
MmeI	TCCRAC	6 cut(s)	158, 483, 606, 841, 1476, 1785
Mox20I	TGGCCA	2 cut(s)	368, 2000
MroI	TCCGGA	1 cut(s)	916
MroXI	GAANNNNTTC	3 cut(s)	245, 2139, 2328
MscI	TGGCCA	2 cut(s)	368, 2000
MseI	TTAA	5 cut(s)	651, 1553, 1605, 1656, 2508
MslI	CAYNNNNRTG	4 cut(s)	254, 660, 1314, 2196
Msp20I	TGGCCA	2 cut(s)	368, 2000
MspA1I	CMGCKG	1 cut(s)	2632
MspI	CCGG	2 cut(s)	917, 2503
MspR9I	CCNGG	6 cut(s)	370, 416, 817, 855, 2097, 2504
MunI	CAATTG	2 cut(s)	602, 2219
Mva1269I	GAATGC	1 cut(s)	2776
MvaI	CCWGG	5 cut(s)	370, 416, 817, 855, 2097
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	2504
NcoI	CCATGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	1708
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	4 cut(s)	626, 676, 989, 1568
NsbI	TGCGCA	1 cut(s)	2753
NspI	RCATGY	2 cut(s)	659, 2069
PaeI	GCATGC	1 cut(s)	2069
PagI	TCATGA	1 cut(s)	1635
PceI	AGGCCT	1 cut(s)	1994
PciI	ACATGT	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	2 cut(s)	901, 1288
PctI	GAATGC	1 cut(s)	2776
PdmI	GAANNNNTTC	3 cut(s)	245, 2139, 2328
PfeI	GAWTC	4 cut(s)	320, 375, 1069, 2425
PflMI	CCANNNNNTGG	4 cut(s)	773, 1139, 1687, 2458
PfoI	TCCNGGA	1 cut(s)	815
PleI	GAGTC	4 cut(s)	683, 1633, 2240, 2456
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	4 cut(s)	683, 1633, 2240, 2456
Ppu21I	YACGTR	1 cut(s)	160
PpuMI	RGGWCCY	2 cut(s)	197, 1958
PscI	ACATGT	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	1716
Psp124BI	GAGCTC	2 cut(s)	744, 1734
Psp5II	RGGWCCY	2 cut(s)	197, 1958
Psp6I	CCWGG	5 cut(s)	368, 414, 815, 853, 2095
PspFI	CCCAGC	1 cut(s)	1115
PspGI	CCWGG	5 cut(s)	368, 414, 815, 853, 2095
PspPI	GGNCC	3 cut(s)	197, 470, 1958
PspPPI	RGGWCCY	2 cut(s)	197, 1958
PstI	CTGCAG	2 cut(s)	73, 1351
PstNI	CAGNNNCTG	2 cut(s)	77, 2632
PsuI	RGATCY	2 cut(s)	1207, 2472
PvuII	CAGCTG	1 cut(s)	2632
RsaI	GTAC	6 cut(s)	158, 1187, 1301, 1488, 1839, 2054
RsaNI	GTAC	6 cut(s)	157, 1186, 1300, 1487, 1838, 2053
RseI	CAYNNNNRTG	4 cut(s)	254, 660, 1314, 2196
SacI	GAGCTC	2 cut(s)	744, 1734
SaqAI	TTAA	5 cut(s)	651, 1553, 1605, 1656, 2508
Sau96I	GGNCC	3 cut(s)	197, 470, 1958
SchI	GAGTC	4 cut(s)	684, 1633, 2240, 2456
ScrFI	CCNGG	6 cut(s)	370, 416, 817, 855, 2097, 2504
SduI	GDGCHC	6 cut(s)	330, 561, 744, 1339, 1734, 2092
SfaNI	GCATC	7 cut(s)	1102, 1318, 1879, 2344, 2677, 2692, 2763
SfcI	CTRYAG	2 cut(s)	69, 1347
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	3 cut(s)	197, 470, 1958
SmiMI	CAYNNNNRTG	4 cut(s)	254, 660, 1314, 2196
SmlI	CTYRAG	2 cut(s)	37, 2340
SmoI	CTYRAG	2 cut(s)	37, 2340
SphI	GCATGC	1 cut(s)	2069
SseBI	AGGCCT	1 cut(s)	1994
SsiI	CCGC	9 cut(s)	11, 99, 213, 291, 1144, 1297, 2093, 2410, 2721
SspDI	GGCGCC	1 cut(s)	23
SspI	AATATT	1 cut(s)	2209
SspMI	CTAG	3 cut(s)	1820, 1829, 2781
SstI	GAGCTC	2 cut(s)	744, 1734
StuI	AGGCCT	1 cut(s)	1994
StyD4I	CCNGG	6 cut(s)	368, 414, 815, 853, 2095, 2502
StyI	CCWWGG	4 cut(s)	93, 384, 447, 1995
TaaI	ACNGT	9 cut(s)	409, 591, 813, 1078, 1158, 1614, 1803, 2263, 2661
TaiI	ACGT	5 cut(s)	162, 1178, 1705, 1903, 2080
TaqI	TCGA	8 cut(s)	133, 1260, 1541, 1642, 2146, 2172, 2428, 2535
TatI	WGTACW	3 cut(s)	1185, 1486, 2052
TauI	GCSGC	3 cut(s)	14, 102, 293
TfiI	GAWTC	4 cut(s)	320, 375, 1069, 2425
Tru1I	TTAA	5 cut(s)	651, 1553, 1605, 1656, 2508
Tru9I	TTAA	5 cut(s)	651, 1553, 1605, 1656, 2508
TscAI	CASTG	8 cut(s)	78, 256, 412, 472, 685, 1221, 1619, 2683
TseFI	GTSAC	4 cut(s)	626, 676, 989, 1568
Tsp45I	GTSAC	4 cut(s)	626, 676, 989, 1568
TspGWI	ACGGA	2 cut(s)	94, 910
TspRI	CASTG	8 cut(s)	78, 256, 412, 472, 685, 1221, 1619, 2683
Van91I	CCANNNNNTGG	4 cut(s)	773, 1139, 1687, 2458
VpaK11BI	GGWCC	3 cut(s)	197, 470, 1958
XapI	RAATTY	1 cut(s)	1601
XceI	RCATGY	2 cut(s)	659, 2069
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 1772
XmiI	GTMKAC	3 cut(s)	396, 1476, 1780
XmnI	GAANNNNTTC	3 cut(s)	245, 2139, 2328
XspI	CTAG	3 cut(s)	1820, 1829, 2781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.