Belongs to the ClpA ClpB family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25140 |
| fragaria_vesca | FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 FvH4_2g40970 |
| malus_domestica | MD08G1058100.v1.1 MD15G1038200.v1.1 |
| prunus_persica | Prupe.1G392200_v2.0.a1 |
| pyrus_communis | pycom08g04820 pycom15g03540 |
| rosa_chinensis | RchiOBHm_Chr6g0299601 |
| rosa_laevigata | RLG00000011406 |
| rosa_multiflora | Rmu_sc0002895.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00168520 |
| rosa_rugosa | Rorug06G0290800 Rorug06G0290900 |
| rosa_samantha | Rh6AG401700 Rh6BG410100 Rh6CG415700 Rh6DG402900 |
| rosa_wichuraiana | Rw6G035150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2897 |
| AccB1I | GGYRCC | 3 cut(s) | 503, 1019, 2233 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1184, 1732, 2602, 2741 |
| AccI | GTMKAC | 4 cut(s) | 35, 441, 1521, 1924 |
| AccII | CGCG | 1 cut(s) | 126 |
| AciI | CCGC | 9 cut(s) | 10, 120, 213, 336, 562, 968, 2265, 2554, 2761 |
| AclI | AACGTT | 1 cut(s) | 1426 |
| AclWI | GGATC | 6 cut(s) | 803, 1247, 1260, 1671, 2390, 2726 |
| AcoI | YGGCCR | 2 cut(s) | 411, 1291 |
| AcsI | RAATTY | 3 cut(s) | 248, 420, 2561 |
| AcuI | CTGAAG | 3 cut(s) | 759, 945, 1499 |
| AcyI | GRCGYC | 1 cut(s) | 50 |
| AdeI | CACNNNGTG | 1 cut(s) | 610 |
| AfaI | GTAC | 4 cut(s) | 293, 1232, 2198, 2719 |
| AfeI | AGCGCT | 2 cut(s) | 387, 1343 |
| AflII | CTTAAG | 1 cut(s) | 1628 |
| AflIII | ACRYGT | 1 cut(s) | 2916 |
| AgeI | ACCGGT | 1 cut(s) | 2646 |
| AjiI | CACGTC | 1 cut(s) | 2919 |
| AjnI | CCWGG | 5 cut(s) | 413, 860, 898, 2239, 2445 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 374, 406 |
| Alw21I | GWGCWC | 3 cut(s) | 375, 606, 1779 |
| Alw26I | GTCTC | 3 cut(s) | 99, 1950, 2536 |
| AlwI | GGATC | 6 cut(s) | 803, 1247, 1260, 1671, 2390, 2726 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2030 |
| Ama87I | CYCGRG | 1 cut(s) | 339 |
| Aor51HI | AGCGCT | 2 cut(s) | 387, 1343 |
| AoxI | GGCC | 6 cut(s) | 411, 515, 753, 820, 1291, 2056 |
| ApeKI | GCWGC | 9 cut(s) | 113, 225, 643, 1351, 1394, 1466, 1469, 1739, 1769 |
| ApoI | RAATTY | 3 cut(s) | 248, 420, 2561 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 28, 60 |
| AsiGI | ACCGGT | 1 cut(s) | 2646 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1980, 2283, 2472 |
| AspLEI | GCGC | 4 cut(s) | 128, 388, 1344, 2898 |
| AspS9I | GGNCC | 2 cut(s) | 515, 2102 |
| AsuC2I | CCSGG | 1 cut(s) | 559 |
| AsuNHI | GCTAGC | 1 cut(s) | 2128 |
| AvaI | CYCGRG | 1 cut(s) | 339 |
| AvaII | GGWCC | 1 cut(s) | 2102 |
| BaeGI | GKGCMC | 2 cut(s) | 1384, 2236 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2759, 2792 |
| BalI | TGGCCA | 2 cut(s) | 413, 1293 |
| BamHI | GGATCC | 1 cut(s) | 1252 |
| BanI | GGYRCC | 3 cut(s) | 503, 1019, 2233 |
| BanII | GRGCYC | 3 cut(s) | 530, 1779, 2453 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2576, 2608 |
| BauI | CACGAG | 1 cut(s) | 96 |
| BbsI | GAAGAC | 5 cut(s) | 1314, 2299, 2338, 2584, 2835 |
| Bbv12I | GWGCWC | 3 cut(s) | 375, 606, 1779 |
| BbvCI | CCTCAGC | 1 cut(s) | 2850 |
| BbvI | GCAGC | 9 cut(s) | 125, 237, 655, 1338, 1406, 1453, 1456, 1726, 1756 |
| BccI | CCATC | 6 cut(s) | 398, 1477, 1540, 1726, 2369, 2869 |
| BceAI | ACGGC | 1 cut(s) | 1282 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 169, 203 |
| BciT130I | CCWGG | 5 cut(s) | 415, 862, 900, 2241, 2447 |
| BciVI | GTATCC | 2 cut(s) | 857, 1683 |
| BclI | TGATCA | 1 cut(s) | 727 |
| BcnI | CCSGG | 1 cut(s) | 559 |
| BcoDI | GTCTC | 3 cut(s) | 99, 1950, 2536 |
| BfaI | CTAG | 4 cut(s) | 792, 1964, 1973, 2129 |
| BfmI | CTRYAG | 2 cut(s) | 1392, 1770 |
| BfoI | RGCGCY | 2 cut(s) | 389, 1345 |
| BfrI | CTTAAG | 1 cut(s) | 1628 |
| BfuI | GTATCC | 2 cut(s) | 857, 1683 |
| BlpI | GCTNAGC | 1 cut(s) | 483 |
| Bme1390I | CCNGG | 6 cut(s) | 415, 559, 862, 900, 2241, 2447 |
| Bme18I | GGWCC | 1 cut(s) | 2102 |
| BmeT110I | CYCGRG | 1 cut(s) | 339 |
| BmgBI | CACGTC | 1 cut(s) | 2919 |
| BmgT120I | GGNCC | 2 cut(s) | 515, 2102 |
| BmiI | GGNNCC | 6 cut(s) | 505, 1021, 1254, 2103, 2235, 2452 |
| BmrFI | CCNGG | 6 cut(s) | 415, 559, 862, 900, 2241, 2447 |
| BmrI | ACTGGG | 1 cut(s) | 25 |
| BmsI | GCATC | 8 cut(s) | 322, 1147, 1363, 2023, 2488, 2836, 2907, 2920 |
| BmtI | GCTAGC | 1 cut(s) | 2132 |
| BmuI | ACTGGG | 1 cut(s) | 25 |
| BpiI | GAAGAC | 5 cut(s) | 1314, 2299, 2338, 2584, 2835 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2816, 2848 |
| BpmI | CTGGAG | 2 cut(s) | 647, 2930 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2850 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 483 |
| BpuEI | CTTGAG | 4 cut(s) | 58, 1283, 2379, 2827 |
| BpuMI | CCSGG | 1 cut(s) | 559 |
| BsaBI | GATNNNNATC | 2 cut(s) | 732, 1487 |
| BsaHI | GRCGYC | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 6 cut(s) | 429, 450, 492, 756, 2446, 2934 |
| BsaWI | WCCGGW | 1 cut(s) | 2646 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1541, 1571, 2435, 2465, 2903, 2933 |
| Bse118I | RCCGGY | 1 cut(s) | 2646 |
| Bse1I | ACTGG | 8 cut(s) | 31, 622, 1611, 1810, 1924, 2114, 2753, 2913 |
| Bse3DI | GCAATG | 4 cut(s) | 477, 1158, 1622, 2802 |
| Bse8I | GATNNNNATC | 2 cut(s) | 732, 1487 |
| BseBI | CCWGG | 5 cut(s) | 415, 862, 900, 2241, 2447 |
| BseDI | CCNNGG | 6 cut(s) | 429, 450, 492, 756, 2446, 2934 |
| BseGI | GGATG | 9 cut(s) | 409, 706, 961, 1162, 1519, 1796, 2377, 2503, 2935 |
| BseJI | GATNNNNATC | 2 cut(s) | 732, 1487 |
| BseMI | GCAATG | 4 cut(s) | 477, 1158, 1622, 2802 |
| BseMII | CTCAG | 8 cut(s) | 104, 270, 287, 360, 497, 527, 1830, 2841 |
| BseNI | ACTGG | 8 cut(s) | 31, 622, 1611, 1810, 1924, 2114, 2753, 2913 |
| BseSI | GKGCMC | 2 cut(s) | 1384, 2236 |
| BseXI | GCAGC | 9 cut(s) | 125, 237, 655, 1338, 1406, 1453, 1456, 1726, 1756 |
| BseYI | CCCAGC | 1 cut(s) | 1160 |
| BsgI | GTGCAG | 1 cut(s) | 1242 |
| Bsh1236I | CGCG | 1 cut(s) | 126 |
| BshFI | GGCC | 6 cut(s) | 413, 517, 755, 822, 1293, 2058 |
| BshNI | GGYRCC | 3 cut(s) | 503, 1019, 2233 |
| BshTI | ACCGGT | 1 cut(s) | 2646 |
| BsiHKAI | GWGCWC | 3 cut(s) | 375, 606, 1779 |
| BsiHKCI | CYCGRG | 1 cut(s) | 339 |
| BsiSI | CCGG | 2 cut(s) | 559, 2647 |
| BslFI | GGGAC | 2 cut(s) | 37, 2842 |
| BsmAI | GTCTC | 3 cut(s) | 99, 1950, 2536 |
| BsmFI | GGGAC | 2 cut(s) | 37, 2842 |
| BsnI | GGCC | 6 cut(s) | 413, 517, 755, 822, 1293, 2058 |
| BsoBI | CYCGRG | 1 cut(s) | 339 |
| Bsp1286I | GDGCHC | 7 cut(s) | 375, 530, 606, 1384, 1779, 2236, 2453 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 483 |
| Bsp19I | CCATGG | 1 cut(s) | 2934 |
| BspACI | CCGC | 9 cut(s) | 10, 120, 213, 336, 562, 968, 2265, 2554, 2761 |
| BspANI | GGCC | 6 cut(s) | 413, 517, 755, 822, 1293, 2058 |
| BspCNI | CTCAG | 8 cut(s) | 103, 269, 286, 361, 496, 528, 1831, 2842 |
| BspFNI | CGCG | 1 cut(s) | 126 |
| BspHI | TCATGA | 3 cut(s) | 1666, 1680, 2338 |
| BspLI | GGNNCC | 6 cut(s) | 505, 1021, 1254, 2103, 2235, 2452 |
| BspMAI | CTGCAG | 2 cut(s) | 1396, 1774 |
| BspOI | GCTAGC | 1 cut(s) | 2132 |
| BspPI | GGATC | 6 cut(s) | 803, 1247, 1260, 1671, 2390, 2726 |
| BspT107I | GGYRCC | 3 cut(s) | 503, 1019, 2233 |
| BspTI | CTTAAG | 1 cut(s) | 1628 |
| BsrDI | GCAATG | 4 cut(s) | 477, 1158, 1622, 2802 |
| BsrFI | RCCGGY | 1 cut(s) | 2646 |
| BsrI | ACTGG | 8 cut(s) | 31, 622, 1611, 1810, 1924, 2114, 2753, 2913 |
| BssAI | RCCGGY | 1 cut(s) | 2646 |
| BssECI | CCNNGG | 6 cut(s) | 429, 450, 492, 756, 2446, 2934 |
| BssNAI | GTATAC | 1 cut(s) | 1925 |
| BssNI | GRCGYC | 1 cut(s) | 50 |
| BssSI | CACGAG | 1 cut(s) | 96 |
| BssT1I | CCWWGG | 4 cut(s) | 429, 492, 756, 2934 |
| Bst1107I | GTATAC | 1 cut(s) | 1925 |
| Bst2BI | CACGAG | 1 cut(s) | 96 |
| Bst2UI | CCWGG | 5 cut(s) | 415, 862, 900, 2241, 2447 |
| Bst4CI | ACNGT | 5 cut(s) | 454, 843, 1123, 2407, 2775 |
| Bst6I | CTCTTC | 4 cut(s) | 241, 274, 1701, 2478 |
| BstACI | GRCGYC | 1 cut(s) | 50 |
| BstAFI | CTTAAG | 1 cut(s) | 1628 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1157 |
| BstDSI | CCRYGG | 2 cut(s) | 450, 2934 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 816 |
| BstF5I | GGATG | 9 cut(s) | 409, 706, 961, 1162, 1519, 1796, 2377, 2503, 2935 |
| BstFNI | CGCG | 1 cut(s) | 126 |
| BstH2I | RGCGCY | 2 cut(s) | 389, 1345 |
| BstHHI | GCGC | 4 cut(s) | 128, 388, 1344, 2898 |
| BstMAI | GTCTC | 3 cut(s) | 99, 1950, 2536 |
| BstNI | CCWGG | 5 cut(s) | 415, 862, 900, 2241, 2447 |
| BstNSI | RCATGY | 1 cut(s) | 2213 |
| BstSCI | CCNGG | 6 cut(s) | 413, 557, 860, 898, 2239, 2445 |
| BstSFI | CTRYAG | 2 cut(s) | 1392, 1770 |
| BstSLI | GKGCMC | 2 cut(s) | 1384, 2236 |
| BstUI | CGCG | 1 cut(s) | 126 |
| BstV1I | GCAGC | 9 cut(s) | 125, 237, 655, 1338, 1406, 1453, 1456, 1726, 1756 |
| BstV2I | GAAGAC | 5 cut(s) | 1314, 2299, 2338, 2584, 2835 |
| BstX2I | RGATCY | 1 cut(s) | 1252 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1510, 2425 |
| BstYI | RGATCY | 1 cut(s) | 1252 |
| BstZ17I | GTATAC | 1 cut(s) | 1925 |
| BsuI | GTATCC | 2 cut(s) | 857, 1683 |
| BsuRI | GGCC | 6 cut(s) | 413, 517, 755, 822, 1293, 2058 |
| BtgI | CCRYGG | 2 cut(s) | 450, 2934 |
| BtrI | CACGTC | 1 cut(s) | 2919 |
| BtsCI | GGATG | 9 cut(s) | 409, 706, 961, 1162, 1519, 1796, 2377, 2503, 2935 |
| BtsI | GCAGTG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 6 cut(s) | 114, 294, 723, 1503, 1572, 2031 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2030 |
| CciI | TCATGA | 3 cut(s) | 1666, 1680, 2338 |
| CfoI | GCGC | 4 cut(s) | 128, 388, 1344, 2898 |
| Cfr10I | RCCGGY | 1 cut(s) | 2646 |
| Cfr13I | GGNCC | 2 cut(s) | 515, 2102 |
| CseI | GACGC | 1 cut(s) | 39 |
| CsiI | ACCWGGT | 1 cut(s) | 2239 |
| Csp6I | GTAC | 4 cut(s) | 292, 1231, 2197, 2718 |
| CspAI | ACCGGT | 1 cut(s) | 2646 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 90, 125, 1012, 1047 |
| CviQI | GTAC | 4 cut(s) | 292, 1231, 2197, 2718 |
| DraIII | CACNNNGTG | 1 cut(s) | 610 |
| EaeI | YGGCCR | 2 cut(s) | 411, 1291 |
| Eam1104I | CTCTTC | 4 cut(s) | 241, 274, 1701, 2478 |
| EarI | CTCTTC | 4 cut(s) | 241, 274, 1701, 2478 |
| EciI | GGCGGA | 1 cut(s) | 2543 |
| Ecl136II | GAGCTC | 1 cut(s) | 1777 |
| Eco130I | CCWWGG | 4 cut(s) | 429, 492, 756, 2934 |
| Eco147I | AGGCCT | 2 cut(s) | 755, 2058 |
| Eco24I | GRGCYC | 3 cut(s) | 530, 1779, 2453 |
| Eco47I | GGWCC | 1 cut(s) | 2102 |
| Eco47III | AGCGCT | 2 cut(s) | 387, 1343 |
| Eco53kI | GAGCTC | 1 cut(s) | 1777 |
| Eco57I | CTGAAG | 3 cut(s) | 759, 945, 1499 |
| Eco88I | CYCGRG | 1 cut(s) | 339 |
| EcoICRI | GAGCTC | 1 cut(s) | 1777 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 816 |
| EcoRII | CCWGG | 5 cut(s) | 413, 860, 898, 2239, 2445 |
| EcoT14I | CCWWGG | 4 cut(s) | 429, 492, 756, 2934 |
| EcoT38I | GRGCYC | 3 cut(s) | 530, 1779, 2453 |
| ErhI | CCWWGG | 4 cut(s) | 429, 492, 756, 2934 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2820, 2852 |
| FaqI | GGGAC | 2 cut(s) | 37, 2842 |
| FauI | CCCGC | 2 cut(s) | 2258, 2754 |
| FbaI | TGATCA | 1 cut(s) | 727 |
| FblI | GTMKAC | 4 cut(s) | 35, 441, 1521, 1924 |
| FokI | GGATG | 9 cut(s) | 416, 713, 968, 1169, 1526, 1783, 2384, 2510, 2942 |
| FriOI | GRGCYC | 3 cut(s) | 530, 1779, 2453 |
| FspBI | CTAG | 4 cut(s) | 792, 1964, 1973, 2129 |
| FspI | TGCGCA | 1 cut(s) | 2897 |
| GlaI | GCGC | 4 cut(s) | 127, 387, 1343, 2897 |
| GsaI | CCCAGC | 1 cut(s) | 1164 |
| GsuI | CTGGAG | 2 cut(s) | 647, 2930 |
| HaeII | RGCGCY | 2 cut(s) | 389, 1345 |
| HaeIII | GGCC | 6 cut(s) | 413, 517, 755, 822, 1293, 2058 |
| HapII | CCGG | 2 cut(s) | 559, 2647 |
| HgaI | GACGC | 1 cut(s) | 39 |
| HhaI | GCGC | 4 cut(s) | 128, 388, 1344, 2898 |
| Hin1I | GRCGYC | 1 cut(s) | 50 |
| Hin6I | GCGC | 4 cut(s) | 126, 386, 1342, 2896 |
| HinP1I | GCGC | 4 cut(s) | 126, 386, 1342, 2896 |
| HincII | GTYRAC | 2 cut(s) | 36, 2274 |
| HindII | GTYRAC | 2 cut(s) | 36, 2274 |
| HindIII | AAGCTT | 1 cut(s) | 2410 |
| HinfI | GANTC | 9 cut(s) | 24, 720, 1114, 1684, 2390, 2569, 2606, 2802, 2831 |
| HpaI | GTTAAC | 1 cut(s) | 2274 |
| HpaII | CCGG | 2 cut(s) | 559, 2647 |
| Hpy166II | GTNNAC | 7 cut(s) | 36, 294, 442, 1522, 1723, 1925, 2274 |
| Hpy8I | GTNNAC | 7 cut(s) | 36, 294, 442, 1522, 1723, 1925, 2274 |
| Hpy99I | CGWCG | 5 cut(s) | 146, 170, 843, 2046, 2292 |
| HpyCH4III | ACNGT | 5 cut(s) | 454, 843, 1123, 2407, 2775 |
| HpyCH4IV | ACGT | 6 cut(s) | 165, 1426, 1747, 2044, 2720, 2918 |
| HpySE526I | ACGT | 6 cut(s) | 165, 1426, 1747, 2044, 2720, 2918 |
| Hsp92I | GRCGYC | 1 cut(s) | 50 |
| HspAI | GCGC | 4 cut(s) | 126, 386, 1342, 2896 |
| Ksp22I | TGATCA | 1 cut(s) | 727 |
| KspAI | GTTAAC | 1 cut(s) | 2274 |
| LmnI | GCTCC | 8 cut(s) | 143, 151, 394, 601, 1130, 1211, 2456, 2707 |
| Lsp1109I | GCAGC | 9 cut(s) | 125, 237, 655, 1338, 1406, 1453, 1456, 1726, 1756 |
| LweI | GCATC | 8 cut(s) | 322, 1147, 1363, 2023, 2488, 2836, 2907, 2920 |
| MabI | ACCWGGT | 1 cut(s) | 2239 |
| MaeI | CTAG | 4 cut(s) | 792, 1964, 1973, 2129 |
| MaeII | ACGT | 6 cut(s) | 165, 1426, 1747, 2044, 2720, 2918 |
| MaeIII | GTNAC | 6 cut(s) | 496, 721, 1072, 1748, 1879, 2252 |
| MfeI | CAATTG | 4 cut(s) | 647, 918, 2363, 2419 |
| MflI | RGATCY | 1 cut(s) | 1252 |
| MhlI | GDGCHC | 7 cut(s) | 375, 530, 606, 1384, 1779, 2236, 2453 |
| MlsI | TGGCCA | 2 cut(s) | 413, 1293 |
| MluNI | TGGCCA | 2 cut(s) | 413, 1293 |
| MlyI | GAGTC | 6 cut(s) | 18, 729, 1678, 2384, 2600, 2825 |
| MmeI | TCCRAC | 3 cut(s) | 528, 1521, 2349 |
| Mox20I | TGGCCA | 2 cut(s) | 413, 1293 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1980, 2283, 2472 |
| MscI | TGGCCA | 2 cut(s) | 413, 1293 |
| MslI | CAYNNNNRTG | 4 cut(s) | 299, 537, 1359, 2340 |
| Msp20I | TGGCCA | 2 cut(s) | 413, 1293 |
| MspA1I | CMGCKG | 1 cut(s) | 1397 |
| MspCI | CTTAAG | 1 cut(s) | 1628 |
| MspI | CCGG | 2 cut(s) | 559, 2647 |
| MspR9I | CCNGG | 6 cut(s) | 415, 559, 862, 900, 2241, 2447 |
| MunI | CAATTG | 4 cut(s) | 647, 918, 2363, 2419 |
| MvaI | CCWGG | 5 cut(s) | 415, 862, 900, 2241, 2447 |
| MvnI | CGCG | 1 cut(s) | 126 |
| NciI | CCSGG | 1 cut(s) | 559 |
| NcoI | CCATGG | 1 cut(s) | 2934 |
| NheI | GCTAGC | 1 cut(s) | 2128 |
| NlaIV | GGNNCC | 6 cut(s) | 505, 1021, 1254, 2103, 2235, 2452 |
| NmeAIII | GCCGAG | 1 cut(s) | 848 |
| NmuCI | GTSAC | 4 cut(s) | 496, 721, 1748, 1879 |
| NsbI | TGCGCA | 1 cut(s) | 2897 |
| NspI | RCATGY | 1 cut(s) | 2213 |
| PagI | TCATGA | 3 cut(s) | 1666, 1680, 2338 |
| PceI | AGGCCT | 2 cut(s) | 755, 2058 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 138, 946, 1333 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1980, 2283, 2472 |
| PfeI | GAWTC | 3 cut(s) | 1114, 2569, 2802 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1184, 1732, 2602, 2741 |
| PfoI | TCCNGGA | 1 cut(s) | 860 |
| PinAI | ACCGGT | 1 cut(s) | 2646 |
| PleI | GAGTC | 6 cut(s) | 18, 728, 1678, 2384, 2600, 2825 |
| PpsI | GAGTC | 6 cut(s) | 18, 728, 1678, 2384, 2600, 2825 |
| Psp124BI | GAGCTC | 1 cut(s) | 1779 |
| Psp1406I | AACGTT | 1 cut(s) | 1426 |
| Psp6I | CCWGG | 5 cut(s) | 413, 860, 898, 2239, 2445 |
| PspFI | CCCAGC | 1 cut(s) | 1160 |
| PspGI | CCWGG | 5 cut(s) | 413, 860, 898, 2239, 2445 |
| PspN4I | GGNNCC | 6 cut(s) | 505, 1021, 1254, 2103, 2235, 2452 |
| PspPI | GGNCC | 2 cut(s) | 515, 2102 |
| PstI | CTGCAG | 2 cut(s) | 1396, 1774 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2030 |
| PsuI | RGATCY | 1 cut(s) | 1252 |
| PvuII | CAGCTG | 1 cut(s) | 1397 |
| RsaI | GTAC | 4 cut(s) | 293, 1232, 2198, 2719 |
| RsaNI | GTAC | 4 cut(s) | 292, 1231, 2197, 2718 |
| RseI | CAYNNNNRTG | 4 cut(s) | 299, 537, 1359, 2340 |
| SacI | GAGCTC | 1 cut(s) | 1779 |
| SalI | GTCGAC | 1 cut(s) | 34 |
| Sau96I | GGNCC | 2 cut(s) | 515, 2102 |
| SchI | GAGTC | 6 cut(s) | 18, 729, 1678, 2384, 2600, 2825 |
| ScrFI | CCNGG | 6 cut(s) | 415, 559, 862, 900, 2241, 2447 |
| SduI | GDGCHC | 7 cut(s) | 375, 530, 606, 1384, 1779, 2236, 2453 |
| SexAI | ACCWGGT | 1 cut(s) | 2239 |
| SfaNI | GCATC | 8 cut(s) | 322, 1147, 1363, 2023, 2488, 2836, 2907, 2920 |
| SfcI | CTRYAG | 2 cut(s) | 1392, 1770 |
| SinI | GGWCC | 1 cut(s) | 2102 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 299, 537, 1359, 2340 |
| SmlI | CTYRAG | 5 cut(s) | 73, 1262, 1628, 2394, 2806 |
| SmoI | CTYRAG | 5 cut(s) | 73, 1262, 1628, 2394, 2806 |
| SseBI | AGGCCT | 2 cut(s) | 755, 2058 |
| SsiI | CCGC | 9 cut(s) | 10, 120, 213, 336, 562, 968, 2265, 2554, 2761 |
| SspMI | CTAG | 4 cut(s) | 792, 1964, 1973, 2129 |
| SstI | GAGCTC | 1 cut(s) | 1779 |
| StuI | AGGCCT | 2 cut(s) | 755, 2058 |
| StyD4I | CCNGG | 6 cut(s) | 413, 557, 860, 898, 2239, 2445 |
| StyI | CCWWGG | 4 cut(s) | 429, 492, 756, 2934 |
| TaaI | ACNGT | 5 cut(s) | 454, 843, 1123, 2407, 2775 |
| TaiI | ACGT | 6 cut(s) | 168, 1429, 1750, 2047, 2723, 2921 |
| TaqI | TCGA | 6 cut(s) | 35, 1586, 1870, 2041, 2290, 2572 |
| TatI | WGTACW | 3 cut(s) | 291, 1230, 2196 |
| TauI | GCSGC | 3 cut(s) | 12, 338, 565 |
| TfiI | GAWTC | 3 cut(s) | 1114, 2569, 2802 |
| TscAI | CASTG | 6 cut(s) | 114, 301, 730, 1510, 1579, 2031 |
| TseFI | GTSAC | 4 cut(s) | 496, 721, 1748, 1879 |
| TseI | GCWGC | 9 cut(s) | 113, 225, 643, 1351, 1394, 1466, 1469, 1739, 1769 |
| Tsp45I | GTSAC | 4 cut(s) | 496, 721, 1748, 1879 |
| TspGWI | ACGGA | 2 cut(s) | 130, 2177 |
| TspRI | CASTG | 6 cut(s) | 114, 301, 730, 1510, 1579, 2031 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1184, 1732, 2602, 2741 |
| Vha464I | CTTAAG | 1 cut(s) | 1628 |
| VpaK11BI | GGWCC | 1 cut(s) | 2102 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 816 |
| XapI | RAATTY | 3 cut(s) | 248, 420, 2561 |
| XceI | RCATGY | 1 cut(s) | 2213 |
| XmiI | GTMKAC | 4 cut(s) | 35, 441, 1521, 1924 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1980, 2283, 2472 |
| XspI | CTAG | 4 cut(s) | 792, 1964, 1973, 2129 |